Experiment: Xylemvessel barcodes T0L1P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.999.1 and Xcc-8004.1000.1 overlap by 4 nucleotides Xcc-8004.1000.1 and Xcc-8004.1001.1 are separated by 164 nucleotides Xcc-8004.1001.1 and Xcc-8004.1002.1 overlap by 4 nucleotides
Xcc-8004.999.1: Xcc-8004.999.1 - putative; ORF located using Glimmer/Genemark, at 945,470 to 945,889
Xcc-8004.999.1
Xcc-8004.1000.1: Xcc-8004.1000.1 - putative; ORF located using Glimmer/Genemark, at 945,886 to 946,452
Xcc-8004.1000.1
Xcc-8004.1001.1: Xcc-8004.1001.1 - FIG01213217: hypothetical protein, at 946,617 to 947,897
Xcc-8004.1001.1
Xcc-8004.1002.1: Xcc-8004.1002.1 - FIG01095481: hypothetical protein, at 947,894 to 949,417
Xcc-8004.1002.1
Position (kb) 946
947
948 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 945.741 kb on + strand, within Xcc-8004.999.1 at 945.982 kb on + strand, within Xcc-8004.1000.1 at 945.983 kb on - strand, within Xcc-8004.1000.1 at 945.983 kb on - strand, within Xcc-8004.1000.1 at 946.046 kb on + strand, within Xcc-8004.1000.1 at 946.046 kb on + strand, within Xcc-8004.1000.1 at 946.046 kb on + strand, within Xcc-8004.1000.1 at 946.047 kb on - strand, within Xcc-8004.1000.1 at 946.269 kb on + strand, within Xcc-8004.1000.1 at 946.558 kb on + strand at 946.661 kb on - strand at 946.661 kb on - strand at 946.732 kb on + strand at 946.732 kb on + strand at 947.209 kb on + strand, within Xcc-8004.1001.1 at 947.209 kb on + strand, within Xcc-8004.1001.1 at 947.209 kb on + strand, within Xcc-8004.1001.1 at 947.209 kb on + strand, within Xcc-8004.1001.1 at 947.209 kb on + strand, within Xcc-8004.1001.1 at 947.209 kb on + strand, within Xcc-8004.1001.1 at 947.210 kb on - strand, within Xcc-8004.1001.1 at 947.210 kb on - strand, within Xcc-8004.1001.1 at 947.521 kb on + strand, within Xcc-8004.1001.1 at 947.962 kb on - strand at 947.982 kb on + strand at 947.982 kb on + strand at 947.982 kb on + strand at 947.982 kb on + strand at 947.982 kb on + strand at 947.983 kb on - strand at 947.983 kb on - strand at 947.983 kb on - strand at 947.983 kb on - strand at 947.983 kb on - strand at 947.983 kb on - strand at 947.983 kb on - strand at 948.004 kb on - strand at 948.004 kb on - strand at 948.037 kb on + strand at 948.037 kb on + strand at 948.367 kb on - strand, within Xcc-8004.1002.1 at 948.615 kb on + strand, within Xcc-8004.1002.1 at 948.693 kb on + strand, within Xcc-8004.1002.1 at 948.693 kb on + strand, within Xcc-8004.1002.1 at 948.694 kb on - strand, within Xcc-8004.1002.1 at 948.765 kb on + strand, within Xcc-8004.1002.1 at 948.765 kb on + strand, within Xcc-8004.1002.1 at 948.765 kb on + strand, within Xcc-8004.1002.1 at 948.766 kb on - strand, within Xcc-8004.1002.1 at 948.766 kb on - strand, within Xcc-8004.1002.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4 remove 945,741 + Xcc-8004.999.1 0.65 -0.1 945,982 + Xcc-8004.1000.1 0.17 +1.6 945,983 - Xcc-8004.1000.1 0.17 -1.5 945,983 - Xcc-8004.1000.1 0.17 -2.3 946,046 + Xcc-8004.1000.1 0.28 -0.7 946,046 + Xcc-8004.1000.1 0.28 -0.2 946,046 + Xcc-8004.1000.1 0.28 -0.3 946,047 - Xcc-8004.1000.1 0.28 -0.7 946,269 + Xcc-8004.1000.1 0.68 -0.3 946,558 + -0.3 946,661 - +0.1 946,661 - -0.1 946,732 + -2.1 946,732 + +0.2 947,209 + Xcc-8004.1001.1 0.46 -0.3 947,209 + Xcc-8004.1001.1 0.46 -1.9 947,209 + Xcc-8004.1001.1 0.46 -1.7 947,209 + Xcc-8004.1001.1 0.46 +1.5 947,209 + Xcc-8004.1001.1 0.46 -0.0 947,209 + Xcc-8004.1001.1 0.46 -2.9 947,210 - Xcc-8004.1001.1 0.46 -1.6 947,210 - Xcc-8004.1001.1 0.46 -2.2 947,521 + Xcc-8004.1001.1 0.71 -0.7 947,962 - -0.0 947,982 + -2.6 947,982 + +1.1 947,982 + +1.2 947,982 + +1.6 947,982 + +1.1 947,983 - +0.2 947,983 - +2.0 947,983 - +1.3 947,983 - -2.5 947,983 - -3.0 947,983 - +2.1 947,983 - +0.2 948,004 - +0.3 948,004 - -3.2 948,037 + -2.2 948,037 + +1.3 948,367 - Xcc-8004.1002.1 0.31 +1.1 948,615 + Xcc-8004.1002.1 0.47 +1.1 948,693 + Xcc-8004.1002.1 0.52 -1.3 948,693 + Xcc-8004.1002.1 0.52 -0.9 948,694 - Xcc-8004.1002.1 0.52 +0.0 948,765 + Xcc-8004.1002.1 0.57 -0.9 948,765 + Xcc-8004.1002.1 0.57 +1.1 948,765 + Xcc-8004.1002.1 0.57 +0.7 948,766 - Xcc-8004.1002.1 0.57 +2.2 948,766 - Xcc-8004.1002.1 0.57 -0.5
Or see this region's nucleotide sequence