Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g47 and HP15_p187g48 are separated by 185 nucleotides HP15_p187g48 and HP15_p187g49 are separated by 48 nucleotides HP15_p187g49 and HP15_p187g50 are separated by 0 nucleotides HP15_p187g50 and HP15_p187g51 overlap by 4 nucleotides
HP15_p187g47: HP15_p187g47 - dTDP-glucose 4,6-dehydratase, at 41,132 to 42,205
_p187g47
HP15_p187g48: HP15_p187g48 - hypothetical protein, at 42,391 to 42,711
_p187g48
HP15_p187g49: HP15_p187g49 - dTDP-4-dehydrorhamnose reductase, at 42,760 to 43,134
_p187g49
HP15_p187g50: HP15_p187g50 - glucose-1-phosphate thymidylyltransferase 1, at 43,135 to 44,019
_p187g50
HP15_p187g51: HP15_p187g51 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 44,016 to 44,561
_p187g51
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.827 kb on + strand, within HP15_p187g47 at 41.827 kb on + strand, within HP15_p187g47 at 41.827 kb on + strand, within HP15_p187g47 at 41.829 kb on - strand, within HP15_p187g47 at 41.835 kb on - strand, within HP15_p187g47 at 41.840 kb on - strand, within HP15_p187g47 at 41.842 kb on - strand, within HP15_p187g47 at 41.853 kb on - strand, within HP15_p187g47 at 41.865 kb on - strand, within HP15_p187g47 at 41.899 kb on - strand, within HP15_p187g47 at 41.900 kb on - strand, within HP15_p187g47 at 41.921 kb on - strand, within HP15_p187g47 at 42.028 kb on + strand, within HP15_p187g47 at 42.028 kb on + strand, within HP15_p187g47 at 42.034 kb on + strand, within HP15_p187g47 at 42.116 kb on + strand at 42.124 kb on - strand at 42.127 kb on - strand at 42.133 kb on + strand at 42.141 kb on - strand at 42.195 kb on - strand at 42.276 kb on - strand at 42.301 kb on - strand at 42.323 kb on + strand at 42.357 kb on - strand at 42.365 kb on - strand at 42.372 kb on + strand at 42.385 kb on - strand at 42.390 kb on - strand at 42.401 kb on - strand at 42.419 kb on + strand at 42.425 kb on + strand, within HP15_p187g48 at 42.429 kb on + strand, within HP15_p187g48 at 42.469 kb on + strand, within HP15_p187g48 at 42.469 kb on + strand, within HP15_p187g48 at 42.477 kb on - strand, within HP15_p187g48 at 42.477 kb on - strand, within HP15_p187g48 at 42.477 kb on - strand, within HP15_p187g48 at 42.477 kb on - strand, within HP15_p187g48 at 42.530 kb on - strand, within HP15_p187g48 at 42.546 kb on - strand, within HP15_p187g48 at 42.571 kb on + strand, within HP15_p187g48 at 42.579 kb on - strand, within HP15_p187g48 at 42.608 kb on + strand, within HP15_p187g48 at 42.608 kb on + strand, within HP15_p187g48 at 42.701 kb on + strand at 42.709 kb on - strand at 42.709 kb on - strand at 42.776 kb on + strand at 42.784 kb on - strand at 42.827 kb on - strand, within HP15_p187g49 at 42.876 kb on - strand, within HP15_p187g49 at 42.896 kb on + strand, within HP15_p187g49 at 42.936 kb on - strand, within HP15_p187g49 at 42.988 kb on + strand, within HP15_p187g49 at 43.004 kb on + strand, within HP15_p187g49 at 43.053 kb on + strand, within HP15_p187g49 at 43.053 kb on + strand, within HP15_p187g49 at 43.061 kb on - strand, within HP15_p187g49 at 43.071 kb on + strand, within HP15_p187g49 at 43.117 kb on - strand at 43.142 kb on + strand at 43.142 kb on + strand at 43.150 kb on - strand at 43.173 kb on + strand at 43.196 kb on + strand at 43.204 kb on - strand at 43.386 kb on - strand, within HP15_p187g50 at 43.393 kb on + strand, within HP15_p187g50 at 43.396 kb on - strand, within HP15_p187g50 at 43.401 kb on - strand, within HP15_p187g50 at 43.401 kb on - strand, within HP15_p187g50 at 43.436 kb on + strand, within HP15_p187g50 at 43.436 kb on + strand, within HP15_p187g50 at 43.436 kb on + strand, within HP15_p187g50 at 43.442 kb on + strand, within HP15_p187g50 at 43.442 kb on + strand, within HP15_p187g50 at 43.444 kb on - strand, within HP15_p187g50 at 43.450 kb on - strand, within HP15_p187g50 at 43.450 kb on - strand, within HP15_p187g50 at 43.461 kb on + strand, within HP15_p187g50 at 43.472 kb on + strand, within HP15_p187g50 at 43.480 kb on - strand, within HP15_p187g50 at 43.543 kb on - strand, within HP15_p187g50 at 43.568 kb on - strand, within HP15_p187g50 at 43.601 kb on + strand, within HP15_p187g50 at 43.649 kb on + strand, within HP15_p187g50 at 43.745 kb on + strand, within HP15_p187g50 at 43.762 kb on - strand, within HP15_p187g50 at 43.782 kb on - strand, within HP15_p187g50
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 41,827 + HP15_p187g47 0.65 -0.4 41,827 + HP15_p187g47 0.65 -0.6 41,827 + HP15_p187g47 0.65 +1.0 41,829 - HP15_p187g47 0.65 +0.2 41,835 - HP15_p187g47 0.65 -1.4 41,840 - HP15_p187g47 0.66 -0.1 41,842 - HP15_p187g47 0.66 +0.4 41,853 - HP15_p187g47 0.67 -0.0 41,865 - HP15_p187g47 0.68 -0.1 41,899 - HP15_p187g47 0.71 +0.1 41,900 - HP15_p187g47 0.72 -0.2 41,921 - HP15_p187g47 0.73 -0.3 42,028 + HP15_p187g47 0.83 +1.3 42,028 + HP15_p187g47 0.83 +0.5 42,034 + HP15_p187g47 0.84 -0.0 42,116 + +0.1 42,124 - -0.6 42,127 - -0.7 42,133 + -1.9 42,141 - -1.9 42,195 - +0.4 42,276 - -0.9 42,301 - -0.1 42,323 + +1.3 42,357 - +0.2 42,365 - -0.0 42,372 + +0.1 42,385 - +0.9 42,390 - +0.7 42,401 - +1.4 42,419 + -0.4 42,425 + HP15_p187g48 0.11 -0.6 42,429 + HP15_p187g48 0.12 -0.3 42,469 + HP15_p187g48 0.24 -0.6 42,469 + HP15_p187g48 0.24 +0.4 42,477 - HP15_p187g48 0.27 +1.7 42,477 - HP15_p187g48 0.27 +0.8 42,477 - HP15_p187g48 0.27 +0.1 42,477 - HP15_p187g48 0.27 -0.4 42,530 - HP15_p187g48 0.43 -0.1 42,546 - HP15_p187g48 0.48 +1.0 42,571 + HP15_p187g48 0.56 -0.9 42,579 - HP15_p187g48 0.59 +0.3 42,608 + HP15_p187g48 0.68 -0.0 42,608 + HP15_p187g48 0.68 +1.1 42,701 + +0.1 42,709 - -0.5 42,709 - -0.3 42,776 + +0.4 42,784 - +0.6 42,827 - HP15_p187g49 0.18 +1.0 42,876 - HP15_p187g49 0.31 +1.0 42,896 + HP15_p187g49 0.36 +1.6 42,936 - HP15_p187g49 0.47 -0.4 42,988 + HP15_p187g49 0.61 -0.0 43,004 + HP15_p187g49 0.65 +1.7 43,053 + HP15_p187g49 0.78 +0.6 43,053 + HP15_p187g49 0.78 +0.5 43,061 - HP15_p187g49 0.80 -0.1 43,071 + HP15_p187g49 0.83 +1.2 43,117 - +0.1 43,142 + +1.4 43,142 + +1.1 43,150 - +1.0 43,173 + -1.0 43,196 + +0.4 43,204 - +2.4 43,386 - HP15_p187g50 0.28 +0.1 43,393 + HP15_p187g50 0.29 +1.8 43,396 - HP15_p187g50 0.29 +0.2 43,401 - HP15_p187g50 0.30 +0.1 43,401 - HP15_p187g50 0.30 -0.6 43,436 + HP15_p187g50 0.34 +0.8 43,436 + HP15_p187g50 0.34 -1.1 43,436 + HP15_p187g50 0.34 +0.4 43,442 + HP15_p187g50 0.35 +1.4 43,442 + HP15_p187g50 0.35 -0.8 43,444 - HP15_p187g50 0.35 -0.3 43,450 - HP15_p187g50 0.36 +0.4 43,450 - HP15_p187g50 0.36 +0.7 43,461 + HP15_p187g50 0.37 -0.0 43,472 + HP15_p187g50 0.38 +1.1 43,480 - HP15_p187g50 0.39 -0.0 43,543 - HP15_p187g50 0.46 -0.5 43,568 - HP15_p187g50 0.49 +0.7 43,601 + HP15_p187g50 0.53 -0.6 43,649 + HP15_p187g50 0.58 +1.0 43,745 + HP15_p187g50 0.69 +2.3 43,762 - HP15_p187g50 0.71 +0.3 43,782 - HP15_p187g50 0.73 -0.6
Or see this region's nucleotide sequence