Strain Fitness in Marinobacter adhaerens HP15 around HP15_2888

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2887 and HP15_2888 overlap by 4 nucleotidesHP15_2888 and HP15_2889 overlap by 4 nucleotidesHP15_2889 and HP15_2890 are separated by 6 nucleotides HP15_2887: HP15_2887 - iron-sulfur cluster binding protein, at 3,023,265 to 3,024,704 _2887 HP15_2888: HP15_2888 - protein containing DUF162, at 3,024,701 to 3,025,354 _2888 HP15_2889: HP15_2889 - membrane protein containing DUF6, transmembrane, at 3,025,351 to 3,026,304 _2889 HP15_2890: HP15_2890 - lactoylglutathione lyase, at 3,026,311 to 3,026,859 _2890 Position (kb) 3024 3025 3026Strain fitness (log2 ratio) -2 -1 0 1 2at 3023.714 kb on - strand, within HP15_2887at 3023.743 kb on - strand, within HP15_2887at 3023.895 kb on + strand, within HP15_2887at 3023.926 kb on - strand, within HP15_2887at 3023.930 kb on + strand, within HP15_2887at 3024.042 kb on - strand, within HP15_2887at 3024.042 kb on - strand, within HP15_2887at 3024.042 kb on - strand, within HP15_2887at 3024.047 kb on - strand, within HP15_2887at 3024.072 kb on + strand, within HP15_2887at 3024.080 kb on - strand, within HP15_2887at 3024.113 kb on + strand, within HP15_2887at 3024.118 kb on + strand, within HP15_2887at 3024.126 kb on - strand, within HP15_2887at 3024.247 kb on + strand, within HP15_2887at 3024.353 kb on + strand, within HP15_2887at 3024.367 kb on + strand, within HP15_2887at 3024.367 kb on + strand, within HP15_2887at 3024.367 kb on + strand, within HP15_2887at 3024.367 kb on + strand, within HP15_2887at 3024.403 kb on - strand, within HP15_2887at 3024.670 kb on - strandat 3024.777 kb on + strand, within HP15_2888at 3024.850 kb on + strand, within HP15_2888at 3024.852 kb on + strand, within HP15_2888at 3024.860 kb on + strand, within HP15_2888at 3024.880 kb on + strand, within HP15_2888at 3025.079 kb on - strand, within HP15_2888at 3025.138 kb on + strand, within HP15_2888at 3025.139 kb on - strand, within HP15_2888at 3025.228 kb on - strand, within HP15_2888at 3025.233 kb on - strand, within HP15_2888at 3025.233 kb on - strand, within HP15_2888at 3025.263 kb on + strand, within HP15_2888at 3025.263 kb on + strand, within HP15_2888at 3025.271 kb on - strand, within HP15_2888at 3025.389 kb on + strandat 3025.396 kb on - strandat 3025.397 kb on - strandat 3025.433 kb on + strandat 3025.456 kb on - strand, within HP15_2889at 3025.607 kb on + strand, within HP15_2889at 3025.617 kb on + strand, within HP15_2889at 3025.625 kb on - strand, within HP15_2889at 3026.004 kb on + strand, within HP15_2889at 3026.127 kb on + strand, within HP15_2889at 3026.127 kb on + strand, within HP15_2889at 3026.157 kb on + strand, within HP15_2889at 3026.175 kb on - strand, within HP15_2889at 3026.234 kb on - strandat 3026.307 kb on - strandat 3026.318 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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3,023,714 - HP15_2887 0.31 -0.3
3,023,743 - HP15_2887 0.33 -0.2
3,023,895 + HP15_2887 0.44 -0.2
3,023,926 - HP15_2887 0.46 -0.9
3,023,930 + HP15_2887 0.46 +0.3
3,024,042 - HP15_2887 0.54 -1.4
3,024,042 - HP15_2887 0.54 +0.7
3,024,042 - HP15_2887 0.54 -0.4
3,024,047 - HP15_2887 0.54 +0.6
3,024,072 + HP15_2887 0.56 -0.2
3,024,080 - HP15_2887 0.57 -0.4
3,024,113 + HP15_2887 0.59 +0.6
3,024,118 + HP15_2887 0.59 +0.2
3,024,126 - HP15_2887 0.60 -1.1
3,024,247 + HP15_2887 0.68 -1.6
3,024,353 + HP15_2887 0.76 -0.3
3,024,367 + HP15_2887 0.77 -0.5
3,024,367 + HP15_2887 0.77 -0.5
3,024,367 + HP15_2887 0.77 -0.3
3,024,367 + HP15_2887 0.77 -1.8
3,024,403 - HP15_2887 0.79 +0.1
3,024,670 - -0.4
3,024,777 + HP15_2888 0.12 -0.0
3,024,850 + HP15_2888 0.23 +0.4
3,024,852 + HP15_2888 0.23 -1.3
3,024,860 + HP15_2888 0.24 -0.2
3,024,880 + HP15_2888 0.27 -0.0
3,025,079 - HP15_2888 0.58 +2.3
3,025,138 + HP15_2888 0.67 -1.6
3,025,139 - HP15_2888 0.67 +0.3
3,025,228 - HP15_2888 0.81 -0.0
3,025,233 - HP15_2888 0.81 -0.4
3,025,233 - HP15_2888 0.81 -2.0
3,025,263 + HP15_2888 0.86 +0.8
3,025,263 + HP15_2888 0.86 +0.6
3,025,271 - HP15_2888 0.87 -1.4
3,025,389 + -0.0
3,025,396 - -0.8
3,025,397 - +0.2
3,025,433 + +1.6
3,025,456 - HP15_2889 0.11 -0.0
3,025,607 + HP15_2889 0.27 -0.2
3,025,617 + HP15_2889 0.28 +1.6
3,025,625 - HP15_2889 0.29 -0.4
3,026,004 + HP15_2889 0.68 +0.2
3,026,127 + HP15_2889 0.81 +2.1
3,026,127 + HP15_2889 0.81 +1.6
3,026,157 + HP15_2889 0.84 +0.1
3,026,175 - HP15_2889 0.86 -0.6
3,026,234 - +0.9
3,026,307 - -0.0
3,026,318 + +1.1

Or see this region's nucleotide sequence