Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2887 and HP15_2888 overlap by 4 nucleotides HP15_2888 and HP15_2889 overlap by 4 nucleotides HP15_2889 and HP15_2890 are separated by 6 nucleotides
HP15_2887: HP15_2887 - iron-sulfur cluster binding protein, at 3,023,265 to 3,024,704
_2887
HP15_2888: HP15_2888 - protein containing DUF162, at 3,024,701 to 3,025,354
_2888
HP15_2889: HP15_2889 - membrane protein containing DUF6, transmembrane, at 3,025,351 to 3,026,304
_2889
HP15_2890: HP15_2890 - lactoylglutathione lyase, at 3,026,311 to 3,026,859
_2890
Position (kb)
3024
3025
3026 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3023.714 kb on - strand, within HP15_2887 at 3023.743 kb on - strand, within HP15_2887 at 3023.895 kb on + strand, within HP15_2887 at 3023.926 kb on - strand, within HP15_2887 at 3023.930 kb on + strand, within HP15_2887 at 3024.042 kb on - strand, within HP15_2887 at 3024.042 kb on - strand, within HP15_2887 at 3024.042 kb on - strand, within HP15_2887 at 3024.047 kb on - strand, within HP15_2887 at 3024.072 kb on + strand, within HP15_2887 at 3024.080 kb on - strand, within HP15_2887 at 3024.113 kb on + strand, within HP15_2887 at 3024.118 kb on + strand, within HP15_2887 at 3024.126 kb on - strand, within HP15_2887 at 3024.247 kb on + strand, within HP15_2887 at 3024.353 kb on + strand, within HP15_2887 at 3024.367 kb on + strand, within HP15_2887 at 3024.367 kb on + strand, within HP15_2887 at 3024.367 kb on + strand, within HP15_2887 at 3024.367 kb on + strand, within HP15_2887 at 3024.403 kb on - strand, within HP15_2887 at 3024.670 kb on - strand at 3024.777 kb on + strand, within HP15_2888 at 3024.850 kb on + strand, within HP15_2888 at 3024.852 kb on + strand, within HP15_2888 at 3024.860 kb on + strand, within HP15_2888 at 3024.880 kb on + strand, within HP15_2888 at 3025.079 kb on - strand, within HP15_2888 at 3025.138 kb on + strand, within HP15_2888 at 3025.139 kb on - strand, within HP15_2888 at 3025.228 kb on - strand, within HP15_2888 at 3025.233 kb on - strand, within HP15_2888 at 3025.233 kb on - strand, within HP15_2888 at 3025.263 kb on + strand, within HP15_2888 at 3025.263 kb on + strand, within HP15_2888 at 3025.271 kb on - strand, within HP15_2888 at 3025.389 kb on + strand at 3025.396 kb on - strand at 3025.397 kb on - strand at 3025.433 kb on + strand at 3025.456 kb on - strand, within HP15_2889 at 3025.607 kb on + strand, within HP15_2889 at 3025.617 kb on + strand, within HP15_2889 at 3025.625 kb on - strand, within HP15_2889 at 3026.004 kb on + strand, within HP15_2889 at 3026.127 kb on + strand, within HP15_2889 at 3026.127 kb on + strand, within HP15_2889 at 3026.157 kb on + strand, within HP15_2889 at 3026.175 kb on - strand, within HP15_2889 at 3026.234 kb on - strand at 3026.307 kb on - strand at 3026.318 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 3,023,714 - HP15_2887 0.31 -0.3 3,023,743 - HP15_2887 0.33 -0.2 3,023,895 + HP15_2887 0.44 -0.2 3,023,926 - HP15_2887 0.46 -0.9 3,023,930 + HP15_2887 0.46 +0.3 3,024,042 - HP15_2887 0.54 -1.4 3,024,042 - HP15_2887 0.54 +0.7 3,024,042 - HP15_2887 0.54 -0.4 3,024,047 - HP15_2887 0.54 +0.6 3,024,072 + HP15_2887 0.56 -0.2 3,024,080 - HP15_2887 0.57 -0.4 3,024,113 + HP15_2887 0.59 +0.6 3,024,118 + HP15_2887 0.59 +0.2 3,024,126 - HP15_2887 0.60 -1.1 3,024,247 + HP15_2887 0.68 -1.6 3,024,353 + HP15_2887 0.76 -0.3 3,024,367 + HP15_2887 0.77 -0.5 3,024,367 + HP15_2887 0.77 -0.5 3,024,367 + HP15_2887 0.77 -0.3 3,024,367 + HP15_2887 0.77 -1.8 3,024,403 - HP15_2887 0.79 +0.1 3,024,670 - -0.4 3,024,777 + HP15_2888 0.12 -0.0 3,024,850 + HP15_2888 0.23 +0.4 3,024,852 + HP15_2888 0.23 -1.3 3,024,860 + HP15_2888 0.24 -0.2 3,024,880 + HP15_2888 0.27 -0.0 3,025,079 - HP15_2888 0.58 +2.3 3,025,138 + HP15_2888 0.67 -1.6 3,025,139 - HP15_2888 0.67 +0.3 3,025,228 - HP15_2888 0.81 -0.0 3,025,233 - HP15_2888 0.81 -0.4 3,025,233 - HP15_2888 0.81 -2.0 3,025,263 + HP15_2888 0.86 +0.8 3,025,263 + HP15_2888 0.86 +0.6 3,025,271 - HP15_2888 0.87 -1.4 3,025,389 + -0.0 3,025,396 - -0.8 3,025,397 - +0.2 3,025,433 + +1.6 3,025,456 - HP15_2889 0.11 -0.0 3,025,607 + HP15_2889 0.27 -0.2 3,025,617 + HP15_2889 0.28 +1.6 3,025,625 - HP15_2889 0.29 -0.4 3,026,004 + HP15_2889 0.68 +0.2 3,026,127 + HP15_2889 0.81 +2.1 3,026,127 + HP15_2889 0.81 +1.6 3,026,157 + HP15_2889 0.84 +0.1 3,026,175 - HP15_2889 0.86 -0.6 3,026,234 - +0.9 3,026,307 - -0.0 3,026,318 + +1.1
Or see this region's nucleotide sequence