Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1757 and HP15_1758 are separated by 98 nucleotides HP15_1758 and HP15_1759 are separated by 199 nucleotides HP15_1759 and HP15_1760 are separated by 24 nucleotides
HP15_1757: HP15_1757 - electron-transferring-flavoprotein dehydrogenase, at 1,855,895 to 1,857,565
_1757
HP15_1758: HP15_1758 - peptidylprolyl isomerase, FKBP-type, at 1,857,664 to 1,858,125
_1758
HP15_1759: HP15_1759 - protein containing DUF1285, at 1,858,325 to 1,858,891
_1759
HP15_1760: HP15_1760 - oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase, at 1,858,916 to 1,859,812
_1760
Position (kb)
1857
1858
1859 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1857.533 kb on - strand at 1857.925 kb on + strand, within HP15_1758 at 1858.200 kb on + strand at 1858.208 kb on - strand at 1858.424 kb on + strand, within HP15_1759 at 1858.479 kb on + strand, within HP15_1759 at 1858.563 kb on - strand, within HP15_1759 at 1858.600 kb on + strand, within HP15_1759 at 1858.681 kb on - strand, within HP15_1759 at 1858.757 kb on + strand, within HP15_1759 at 1858.928 kb on + strand at 1858.936 kb on - strand at 1858.953 kb on + strand at 1859.064 kb on + strand, within HP15_1760 at 1859.064 kb on + strand, within HP15_1760 at 1859.072 kb on - strand, within HP15_1760
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 1,857,533 - -0.5 1,857,925 + HP15_1758 0.56 -0.7 1,858,200 + -0.5 1,858,208 - +0.9 1,858,424 + HP15_1759 0.17 +0.8 1,858,479 + HP15_1759 0.27 +3.8 1,858,563 - HP15_1759 0.42 +1.5 1,858,600 + HP15_1759 0.49 +2.2 1,858,681 - HP15_1759 0.63 -0.9 1,858,757 + HP15_1759 0.76 +0.7 1,858,928 + -0.6 1,858,936 - -1.0 1,858,953 + -0.3 1,859,064 + HP15_1760 0.16 -0.5 1,859,064 + HP15_1760 0.16 -0.1 1,859,072 - HP15_1760 0.17 -1.2
Or see this region's nucleotide sequence