Strain Fitness in Marinobacter adhaerens HP15 around HP15_1532

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1531 and HP15_1532 are separated by 284 nucleotidesHP15_1532 and HP15_1533 are separated by 1 nucleotides HP15_1531: HP15_1531 - diguanylate cyclase (GGDEF domain), at 1,612,594 to 1,613,520 _1531 HP15_1532: HP15_1532 - transcriptional regulator, GntR family, at 1,613,805 to 1,614,488 _1532 HP15_1533: HP15_1533 - chromosome segregation protein SMC, at 1,614,490 to 1,617,984 _1533 Position (kb) 1613 1614 1615Strain fitness (log2 ratio) -2 -1 0 1at 1612.812 kb on + strand, within HP15_1531at 1612.932 kb on + strand, within HP15_1531at 1612.966 kb on - strand, within HP15_1531at 1612.966 kb on - strand, within HP15_1531at 1612.966 kb on - strand, within HP15_1531at 1613.205 kb on + strand, within HP15_1531at 1613.247 kb on + strand, within HP15_1531at 1613.264 kb on - strand, within HP15_1531at 1613.266 kb on + strand, within HP15_1531at 1613.357 kb on - strand, within HP15_1531at 1613.707 kb on - strandat 1613.707 kb on - strandat 1613.717 kb on - strandat 1614.407 kb on + strand, within HP15_1532at 1614.547 kb on + strandat 1614.644 kb on + strandat 1614.698 kb on + strandat 1614.860 kb on - strand, within HP15_1533at 1614.935 kb on - strand, within HP15_1533

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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1,612,812 + HP15_1531 0.24 -0.4
1,612,932 + HP15_1531 0.36 -2.2
1,612,966 - HP15_1531 0.40 +1.0
1,612,966 - HP15_1531 0.40 -0.5
1,612,966 - HP15_1531 0.40 -0.4
1,613,205 + HP15_1531 0.66 -0.1
1,613,247 + HP15_1531 0.70 -0.7
1,613,264 - HP15_1531 0.72 -0.5
1,613,266 + HP15_1531 0.72 -0.5
1,613,357 - HP15_1531 0.82 -0.8
1,613,707 - +0.3
1,613,707 - +0.8
1,613,717 - -1.4
1,614,407 + HP15_1532 0.88 +1.2
1,614,547 + -1.0
1,614,644 + +0.5
1,614,698 + +0.8
1,614,860 - HP15_1533 0.11 +0.6
1,614,935 - HP15_1533 0.13 -0.4

Or see this region's nucleotide sequence