Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1418 and HP15_1419 are separated by 309 nucleotides HP15_1419 and HP15_1420 are separated by 153 nucleotides HP15_1420 and HP15_1421 overlap by 1 nucleotides
HP15_1418: HP15_1418 - membrane protein containing DUF214, permase predicted, at 1,500,234 to 1,502,768
_1418
HP15_1419: HP15_1419 - ABC transporter periplasmic amino acid-binding protein, at 1,503,078 to 1,503,896
_1419
HP15_1420: HP15_1420 - putative amino acid ABC transporter permease protein, at 1,504,050 to 1,504,715
_1420
HP15_1421: HP15_1421 - ABC transporter, membrane spanning protein, at 1,504,715 to 1,505,368
_1421
Position (kb)
1503
1504 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 1502.135 kb on + strand, within HP15_1418 at 1502.143 kb on - strand, within HP15_1418 at 1502.151 kb on + strand, within HP15_1418 at 1502.307 kb on + strand, within HP15_1418 at 1502.325 kb on - strand, within HP15_1418 at 1502.341 kb on + strand, within HP15_1418 at 1502.341 kb on + strand, within HP15_1418 at 1502.344 kb on - strand, within HP15_1418 at 1502.458 kb on - strand, within HP15_1418 at 1502.490 kb on - strand, within HP15_1418 at 1502.609 kb on + strand at 1502.720 kb on + strand at 1502.728 kb on - strand at 1502.742 kb on - strand at 1502.756 kb on - strand at 1502.756 kb on - strand at 1503.076 kb on - strand at 1503.125 kb on - strand at 1503.174 kb on + strand, within HP15_1419 at 1503.294 kb on - strand, within HP15_1419 at 1503.294 kb on - strand, within HP15_1419 at 1503.319 kb on - strand, within HP15_1419 at 1503.390 kb on - strand, within HP15_1419 at 1503.392 kb on + strand, within HP15_1419 at 1503.413 kb on - strand, within HP15_1419 at 1503.471 kb on - strand, within HP15_1419 at 1503.510 kb on - strand, within HP15_1419 at 1503.536 kb on - strand, within HP15_1419 at 1503.623 kb on + strand, within HP15_1419 at 1503.703 kb on - strand, within HP15_1419 at 1503.703 kb on - strand, within HP15_1419 at 1503.778 kb on + strand, within HP15_1419 at 1503.818 kb on + strand at 1504.008 kb on - strand at 1504.008 kb on - strand at 1504.100 kb on + strand at 1504.122 kb on - strand, within HP15_1420 at 1504.251 kb on - strand, within HP15_1420 at 1504.334 kb on - strand, within HP15_1420 at 1504.417 kb on - strand, within HP15_1420 at 1504.443 kb on + strand, within HP15_1420 at 1504.523 kb on - strand, within HP15_1420 at 1504.680 kb on - strand at 1504.755 kb on + strand at 1504.763 kb on - strand at 1504.767 kb on - strand at 1504.803 kb on + strand, within HP15_1421
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 1,502,135 + HP15_1418 0.75 -1.5 1,502,143 - HP15_1418 0.75 -0.2 1,502,151 + HP15_1418 0.76 -0.8 1,502,307 + HP15_1418 0.82 -0.3 1,502,325 - HP15_1418 0.82 -0.3 1,502,341 + HP15_1418 0.83 -0.3 1,502,341 + HP15_1418 0.83 +0.4 1,502,344 - HP15_1418 0.83 +1.6 1,502,458 - HP15_1418 0.88 -0.2 1,502,490 - HP15_1418 0.89 -0.9 1,502,609 + +0.2 1,502,720 + +0.9 1,502,728 - -0.5 1,502,742 - +0.4 1,502,756 - +0.6 1,502,756 - +0.3 1,503,076 - +0.0 1,503,125 - -0.5 1,503,174 + HP15_1419 0.12 -0.4 1,503,294 - HP15_1419 0.26 +6.1 1,503,294 - HP15_1419 0.26 +0.7 1,503,319 - HP15_1419 0.29 -0.6 1,503,390 - HP15_1419 0.38 -0.4 1,503,392 + HP15_1419 0.38 +0.0 1,503,413 - HP15_1419 0.41 +1.1 1,503,471 - HP15_1419 0.48 +0.4 1,503,510 - HP15_1419 0.53 +1.1 1,503,536 - HP15_1419 0.56 +0.2 1,503,623 + HP15_1419 0.67 -0.1 1,503,703 - HP15_1419 0.76 -0.7 1,503,703 - HP15_1419 0.76 -0.4 1,503,778 + HP15_1419 0.85 -0.1 1,503,818 + +1.0 1,504,008 - -0.6 1,504,008 - -0.5 1,504,100 + -0.8 1,504,122 - HP15_1420 0.11 -0.1 1,504,251 - HP15_1420 0.30 -1.9 1,504,334 - HP15_1420 0.43 -0.3 1,504,417 - HP15_1420 0.55 -0.1 1,504,443 + HP15_1420 0.59 -0.9 1,504,523 - HP15_1420 0.71 +0.1 1,504,680 - -0.4 1,504,755 + +1.2 1,504,763 - +0.2 1,504,767 - +0.8 1,504,803 + HP15_1421 0.13 -2.1
Or see this region's nucleotide sequence