Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02015 and BWI76_RS02020 are separated by 146 nucleotides BWI76_RS02020 and BWI76_RS02025 are separated by 185 nucleotides
BWI76_RS02015: BWI76_RS02015 - NCS2 family permease, at 412,912 to 414,261
_RS02015
BWI76_RS02020: BWI76_RS02020 - Na+/H+ antiporter, at 414,408 to 416,054
_RS02020
BWI76_RS02025: BWI76_RS02025 - LysR family transcriptional regulator, at 416,240 to 417,127
_RS02025
Position (kb) 414
415
416
417 Strain fitness (log2 ratio) -2
-1
0
1
2 at 413.769 kb on + strand at 413.813 kb on - strand, within BWI76_RS02015 at 413.874 kb on - strand, within BWI76_RS02015 at 413.935 kb on - strand, within BWI76_RS02015 at 414.012 kb on - strand, within BWI76_RS02015 at 414.098 kb on + strand, within BWI76_RS02015 at 414.143 kb on + strand at 414.151 kb on - strand at 414.191 kb on + strand at 414.199 kb on - strand at 414.201 kb on + strand at 414.209 kb on - strand at 414.209 kb on - strand at 414.335 kb on + strand at 414.347 kb on + strand at 414.439 kb on - strand at 414.439 kb on - strand at 414.507 kb on - strand at 414.525 kb on + strand at 414.528 kb on - strand at 414.530 kb on + strand at 414.533 kb on - strand at 414.565 kb on + strand at 414.602 kb on + strand, within BWI76_RS02020 at 414.727 kb on - strand, within BWI76_RS02020 at 414.798 kb on - strand, within BWI76_RS02020 at 414.808 kb on - strand, within BWI76_RS02020 at 414.808 kb on - strand, within BWI76_RS02020 at 415.019 kb on - strand, within BWI76_RS02020 at 415.074 kb on + strand, within BWI76_RS02020 at 415.099 kb on + strand, within BWI76_RS02020 at 415.099 kb on + strand, within BWI76_RS02020 at 415.107 kb on - strand, within BWI76_RS02020 at 415.166 kb on - strand, within BWI76_RS02020 at 415.417 kb on - strand, within BWI76_RS02020 at 415.417 kb on - strand, within BWI76_RS02020 at 415.428 kb on - strand, within BWI76_RS02020 at 415.593 kb on + strand, within BWI76_RS02020 at 415.695 kb on - strand, within BWI76_RS02020 at 415.715 kb on - strand, within BWI76_RS02020 at 415.828 kb on + strand at 415.836 kb on - strand at 415.848 kb on - strand, within BWI76_RS02020 at 415.937 kb on - strand at 415.950 kb on + strand at 415.952 kb on + strand at 415.958 kb on - strand at 415.969 kb on + strand at 415.995 kb on + strand at 416.014 kb on + strand at 416.014 kb on + strand at 416.014 kb on + strand at 416.022 kb on - strand at 416.024 kb on + strand at 416.032 kb on - strand at 416.048 kb on + strand at 416.048 kb on + strand at 416.070 kb on + strand at 416.078 kb on - strand at 416.083 kb on - strand at 416.083 kb on - strand at 416.173 kb on + strand at 416.173 kb on + strand at 416.181 kb on - strand at 416.181 kb on - strand at 416.181 kb on - strand at 416.181 kb on - strand at 416.183 kb on + strand at 416.183 kb on - strand at 416.185 kb on + strand at 416.185 kb on + strand at 416.191 kb on - strand at 416.193 kb on + strand at 416.193 kb on + strand at 416.193 kb on + strand at 416.193 kb on + strand at 416.193 kb on + strand at 416.193 kb on + strand at 416.193 kb on + strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.201 kb on - strand at 416.227 kb on - strand at 416.237 kb on - strand at 416.237 kb on - strand at 416.400 kb on - strand, within BWI76_RS02025 at 416.448 kb on + strand, within BWI76_RS02025 at 416.520 kb on + strand, within BWI76_RS02025 at 416.590 kb on + strand, within BWI76_RS02025 at 416.680 kb on + strand, within BWI76_RS02025 at 416.736 kb on - strand, within BWI76_RS02025 at 416.838 kb on + strand, within BWI76_RS02025 at 416.851 kb on - strand, within BWI76_RS02025 at 416.851 kb on - strand at 416.851 kb on - strand, within BWI76_RS02025 at 416.851 kb on - strand, within BWI76_RS02025 at 416.901 kb on + strand, within BWI76_RS02025 at 416.905 kb on + strand, within BWI76_RS02025 at 416.909 kb on - strand at 416.914 kb on - strand, within BWI76_RS02025 at 416.915 kb on + strand, within BWI76_RS02025 at 416.925 kb on + strand, within BWI76_RS02025 at 416.938 kb on + strand, within BWI76_RS02025 at 416.949 kb on + strand, within BWI76_RS02025 at 416.953 kb on + strand, within BWI76_RS02025 at 416.953 kb on + strand, within BWI76_RS02025 at 416.953 kb on + strand, within BWI76_RS02025 at 416.955 kb on - strand, within BWI76_RS02025 at 416.958 kb on + strand, within BWI76_RS02025 at 416.959 kb on + strand, within BWI76_RS02025 at 416.959 kb on - strand, within BWI76_RS02025 at 416.961 kb on - strand, within BWI76_RS02025 at 416.961 kb on - strand, within BWI76_RS02025 at 416.961 kb on - strand, within BWI76_RS02025 at 416.964 kb on + strand, within BWI76_RS02025 at 416.964 kb on + strand, within BWI76_RS02025 at 416.966 kb on - strand, within BWI76_RS02025 at 416.966 kb on - strand, within BWI76_RS02025 at 416.967 kb on - strand, within BWI76_RS02025 at 416.972 kb on - strand, within BWI76_RS02025 at 416.975 kb on + strand, within BWI76_RS02025 at 416.990 kb on + strand, within BWI76_RS02025 at 416.998 kb on - strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.023 kb on + strand, within BWI76_RS02025 at 417.031 kb on - strand, within BWI76_RS02025 at 417.031 kb on - strand, within BWI76_RS02025 at 417.031 kb on - strand, within BWI76_RS02025 at 417.031 kb on - strand, within BWI76_RS02025 at 417.031 kb on - strand, within BWI76_RS02025 at 417.031 kb on - strand, within BWI76_RS02025 at 417.032 kb on + strand, within BWI76_RS02025 at 417.033 kb on + strand, within BWI76_RS02025 at 417.036 kb on - strand, within BWI76_RS02025 at 417.042 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 413,769 + +0.5 413,813 - BWI76_RS02015 0.67 -0.5 413,874 - BWI76_RS02015 0.71 -0.8 413,935 - BWI76_RS02015 0.76 +0.5 414,012 - BWI76_RS02015 0.81 -0.6 414,098 + BWI76_RS02015 0.88 -1.2 414,143 + +0.3 414,151 - +0.1 414,191 + -0.3 414,199 - +0.1 414,201 + +0.5 414,209 - -0.0 414,209 - +0.9 414,335 + -0.2 414,347 + -0.8 414,439 - +0.2 414,439 - +0.0 414,507 - -2.6 414,525 + +0.0 414,528 - +0.5 414,530 + -0.9 414,533 - +0.1 414,565 + +1.1 414,602 + BWI76_RS02020 0.12 +0.6 414,727 - BWI76_RS02020 0.19 +0.1 414,798 - BWI76_RS02020 0.24 -2.2 414,808 - BWI76_RS02020 0.24 -0.3 414,808 - BWI76_RS02020 0.24 +0.7 415,019 - BWI76_RS02020 0.37 +0.2 415,074 + BWI76_RS02020 0.40 -0.1 415,099 + BWI76_RS02020 0.42 -0.3 415,099 + BWI76_RS02020 0.42 -0.1 415,107 - BWI76_RS02020 0.42 +0.3 415,166 - BWI76_RS02020 0.46 +0.5 415,417 - BWI76_RS02020 0.61 +0.1 415,417 - BWI76_RS02020 0.61 +0.8 415,428 - BWI76_RS02020 0.62 +0.1 415,593 + BWI76_RS02020 0.72 -0.1 415,695 - BWI76_RS02020 0.78 +1.2 415,715 - BWI76_RS02020 0.79 +1.2 415,828 + +0.0 415,836 - +0.6 415,848 - BWI76_RS02020 0.87 +0.5 415,937 - -0.1 415,950 + +1.8 415,952 + +0.1 415,958 - -0.3 415,969 + -0.4 415,995 + +0.0 416,014 + -1.7 416,014 + -0.6 416,014 + +1.3 416,022 - +0.6 416,024 + +0.1 416,032 - +0.4 416,048 + -0.3 416,048 + -0.0 416,070 + +0.2 416,078 - -0.1 416,083 - -0.3 416,083 - -0.1 416,173 + -0.5 416,173 + -0.1 416,181 - -0.1 416,181 - +0.2 416,181 - -0.8 416,181 - -0.6 416,183 + +0.1 416,183 - -0.1 416,185 + -1.0 416,185 + +0.3 416,191 - -0.2 416,193 + +0.3 416,193 + -0.7 416,193 + -0.9 416,193 + -1.1 416,193 + +0.3 416,193 + -1.4 416,193 + -0.5 416,201 - -0.9 416,201 - -0.6 416,201 - +0.5 416,201 - -0.1 416,201 - -0.2 416,201 - +0.3 416,201 - -0.2 416,201 - +0.4 416,201 - -0.1 416,201 - -1.3 416,201 - -1.4 416,201 - +1.0 416,201 - +0.4 416,201 - +0.1 416,201 - -0.3 416,201 - +1.8 416,227 - -0.3 416,237 - +0.2 416,237 - -0.3 416,400 - BWI76_RS02025 0.18 -1.5 416,448 + BWI76_RS02025 0.23 +0.3 416,520 + BWI76_RS02025 0.32 +0.0 416,590 + BWI76_RS02025 0.39 +0.0 416,680 + BWI76_RS02025 0.50 -0.5 416,736 - BWI76_RS02025 0.56 -0.2 416,838 + BWI76_RS02025 0.67 +1.1 416,851 - BWI76_RS02025 0.69 -0.5 416,851 - -0.2 416,851 - BWI76_RS02025 0.69 -0.1 416,851 - BWI76_RS02025 0.69 -0.3 416,901 + BWI76_RS02025 0.74 -1.1 416,905 + BWI76_RS02025 0.75 -0.2 416,909 - +1.3 416,914 - BWI76_RS02025 0.76 -0.5 416,915 + BWI76_RS02025 0.76 -2.1 416,925 + BWI76_RS02025 0.77 +1.3 416,938 + BWI76_RS02025 0.79 +0.9 416,949 + BWI76_RS02025 0.80 -0.3 416,953 + BWI76_RS02025 0.80 +0.1 416,953 + BWI76_RS02025 0.80 +0.6 416,953 + BWI76_RS02025 0.80 +2.1 416,955 - BWI76_RS02025 0.81 +0.0 416,958 + BWI76_RS02025 0.81 +0.0 416,959 + BWI76_RS02025 0.81 +1.0 416,959 - BWI76_RS02025 0.81 +2.0 416,961 - BWI76_RS02025 0.81 -0.2 416,961 - BWI76_RS02025 0.81 -0.4 416,961 - BWI76_RS02025 0.81 -0.8 416,964 + BWI76_RS02025 0.82 -0.5 416,964 + BWI76_RS02025 0.82 +0.2 416,966 - BWI76_RS02025 0.82 +0.3 416,966 - BWI76_RS02025 0.82 +0.7 416,967 - BWI76_RS02025 0.82 -0.6 416,972 - BWI76_RS02025 0.82 -0.3 416,975 + BWI76_RS02025 0.83 -0.7 416,990 + BWI76_RS02025 0.84 +1.6 416,998 - BWI76_RS02025 0.85 +0.4 417,023 + BWI76_RS02025 0.88 +0.3 417,023 + BWI76_RS02025 0.88 +0.0 417,023 + BWI76_RS02025 0.88 -2.2 417,023 + BWI76_RS02025 0.88 -0.7 417,023 + BWI76_RS02025 0.88 -1.7 417,023 + BWI76_RS02025 0.88 +1.7 417,023 + BWI76_RS02025 0.88 +0.4 417,023 + BWI76_RS02025 0.88 +0.0 417,031 - BWI76_RS02025 0.89 -0.0 417,031 - BWI76_RS02025 0.89 +0.3 417,031 - BWI76_RS02025 0.89 -2.7 417,031 - BWI76_RS02025 0.89 +1.2 417,031 - BWI76_RS02025 0.89 +1.1 417,031 - BWI76_RS02025 0.89 -0.0 417,032 + BWI76_RS02025 0.89 +0.0 417,033 + BWI76_RS02025 0.89 -0.3 417,036 - BWI76_RS02025 0.90 -0.4 417,042 + +0.3
Or see this region's nucleotide sequence