Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17815

Experiment: MRS + kanamycin Time8hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MRS + kanamycin Time8hr
1,776,103	-		BBR_RS17805	0.85	+0.4
1,776,105	+		BBR_RS17805	0.85	-0.2
1,776,105	+		BBR_RS17805	0.85	-1.2
1,776,113	-		BBR_RS17805	0.86	-0.9
1,776,113	-		BBR_RS17805	0.86	-3.8
1,776,113	-		BBR_RS17805	0.86	-0.2
1,776,113	-		BBR_RS17805	0.86	+0.7
1,776,113	-		BBR_RS17805	0.86	-0.9
1,776,133	-		BBR_RS17805	0.88	-0.9
1,776,169	-				-0.2
1,776,169	-				+4.7
1,776,224	-				+2.0
1,776,259	-				-0.2
1,776,280	+				-1.2
1,776,280	+				+0.3
1,776,281	-				-0.3
1,776,281	-				+0.3
1,776,286	+				-2.8
1,776,304	-				-2.8
1,776,304	-				+1.8
1,776,361	+		BBR_RS17810	0.12	-3.8
1,776,369	-		BBR_RS17810	0.14	+0.3
1,776,426	-		BBR_RS17810	0.22	-1.2
1,776,443	+		BBR_RS17810	0.24	+2.5
1,776,463	-		BBR_RS17810	0.27	+1.6
1,776,463	-		BBR_RS17810	0.27	-1.2
1,776,465	+		BBR_RS17810	0.28	+3.2
1,776,476	-		BBR_RS17810	0.29	+0.2
1,776,492	-		BBR_RS17810	0.31	-2.0
1,776,492	-		BBR_RS17810	0.31	+2.1
1,776,502	+		BBR_RS17810	0.33	+0.3
1,776,576	-		BBR_RS17810	0.44	+1.2
1,776,583	-		BBR_RS17810	0.45	+0.9
1,776,583	-		BBR_RS17810	0.45	-0.4
1,776,699	-		BBR_RS17810	0.62	+0.8
1,776,729	+		BBR_RS17810	0.66	+1.3
1,776,743	-		BBR_RS17810	0.68	+2.9
1,776,747	-		BBR_RS17810	0.69	+1.2
1,776,749	+		BBR_RS17810	0.69	+1.3
1,776,773	+		BBR_RS17810	0.72	-0.1
1,776,814	-		BBR_RS17810	0.78	+1.2
1,776,912	-				-0.2
1,776,917	+				-1.1
1,776,923	-				+0.3
1,776,925	-				+0.1
1,776,972	-				+0.5
1,776,973	-				-0.9
1,777,079	-				-0.5
1,777,082	+				-0.8
1,777,169	-				+1.6
1,777,206	+		BBR_RS17815	0.12	+0.5
1,777,211	+		BBR_RS17815	0.13	+1.1
1,777,232	+		BBR_RS17815	0.15	+0.1
1,777,258	-		BBR_RS17815	0.17	+1.1
1,777,258	-		BBR_RS17815	0.17	-2.1
1,777,275	+		BBR_RS17815	0.19	+0.3
1,777,296	+		BBR_RS17815	0.21	+2.0
1,777,296	+		BBR_RS17815	0.21	+1.2
1,777,304	-		BBR_RS17815	0.22	+0.1
1,777,311	+		BBR_RS17815	0.23	+2.1
1,777,373	+		BBR_RS17815	0.29	+1.5
1,777,380	+		BBR_RS17815	0.30	+2.1
1,777,435	+		BBR_RS17815	0.35	-1.1
1,777,455	+		BBR_RS17815	0.38	+2.2
1,777,502	-		BBR_RS17815	0.42	-0.5
1,777,502	-		BBR_RS17815	0.42	-0.2
1,777,516	-		BBR_RS17815	0.44	+2.3
1,777,534	-		BBR_RS17815	0.46	+0.3
1,777,550	-		BBR_RS17815	0.47	+0.3
1,777,629	-		BBR_RS17815	0.55	-0.5
1,777,633	+		BBR_RS17815	0.56	+1.1
1,777,633	+		BBR_RS17815	0.56	+0.8
1,777,633	+		BBR_RS17815	0.56	+1.3
1,777,633	+		BBR_RS17815	0.56	+3.9
1,777,641	-		BBR_RS17815	0.56	-2.4
1,777,733	-		BBR_RS17815	0.66	+0.4
1,777,733	-		BBR_RS17815	0.66	+0.5
1,777,733	-		BBR_RS17815	0.66	+0.1
1,777,767	-		BBR_RS17815	0.69	+1.1
1,777,767	-		BBR_RS17815	0.69	+0.1
1,777,792	-		BBR_RS17815	0.72	-1.3
1,777,793	+		BBR_RS17815	0.72	+0.1
1,777,801	-		BBR_RS17815	0.73	-0.2
1,777,801	-		BBR_RS17815	0.73	-0.2
1,777,801	-		BBR_RS17815	0.73	+1.5
1,777,803	+		BBR_RS17815	0.73	-0.4
1,777,803	+		BBR_RS17815	0.73	+0.2
1,777,803	+		BBR_RS17815	0.73	+0.8
1,777,803	+		BBR_RS17815	0.73	+2.1
1,777,803	+		BBR_RS17815	0.73	+0.6
1,777,803	+		BBR_RS17815	0.73	+1.3
1,777,803	+		BBR_RS17815	0.73	-1.1
1,777,806	-		BBR_RS17815	0.73	-1.1
1,777,811	-		BBR_RS17815	0.74	-1.8
1,777,811	-		BBR_RS17815	0.74	+0.3
1,777,811	-		BBR_RS17815	0.74	-0.1
1,777,811	-		BBR_RS17815	0.74	-0.7
1,777,811	-		BBR_RS17815	0.74	+1.8
1,777,811	-		BBR_RS17815	0.74	-0.5
1,777,811	-		BBR_RS17815	0.74	-0.2
1,777,811	-		BBR_RS17815	0.74	-0.2
1,777,827	-		BBR_RS17815	0.75	+1.1
1,777,832	-		BBR_RS17815	0.76	+1.1
1,777,837	-		BBR_RS17815	0.76	-2.2
1,777,839	+		BBR_RS17815	0.77	-1.7
1,777,839	+		BBR_RS17815	0.77	-0.8
1,777,842	-		BBR_RS17815	0.77	-0.9
1,777,871	-		BBR_RS17815	0.80	-0.7
1,777,905	-		BBR_RS17815	0.83	-0.0
1,777,943	+		BBR_RS17815	0.87	-0.4
1,777,982	+				-1.2
1,777,989	+				+0.8
1,777,989	+				+1.0
1,777,989	+				+0.1
1,777,991	+				-1.9
1,778,011	-				-0.9
1,778,040	+				-2.2
1,778,044	+				+1.3
1,778,089	-				+0.9
1,778,115	+				-0.2
1,778,216	+				-1.1
1,778,224	-		BBR_RS17820	0.10	+1.1
1,778,257	-		BBR_RS17820	0.14	+0.9
1,778,290	-		BBR_RS17820	0.17	+1.1
1,778,298	+		BBR_RS17820	0.18	+1.3
1,778,302	+		BBR_RS17820	0.18	-0.7
1,778,316	-		BBR_RS17820	0.20	+1.0
1,778,355	+		BBR_RS17820	0.24	-1.2
1,778,355	+		BBR_RS17820	0.24	-0.4
1,778,363	-		BBR_RS17820	0.25	-0.4
1,778,381	-		BBR_RS17820	0.27	-0.2
1,778,383	+		BBR_RS17820	0.27	+1.8
1,778,480	-		BBR_RS17820	0.37	-0.1
1,778,546	+		BBR_RS17820	0.44	+2.8
1,778,563	-		BBR_RS17820	0.46	+0.8
1,778,568	+		BBR_RS17820	0.46	-0.0
1,778,621	+		BBR_RS17820	0.52	-1.2
1,778,638	+		BBR_RS17820	0.54	+1.6
1,778,646	-		BBR_RS17820	0.54	-1.2
1,778,649	-		BBR_RS17820	0.55	-1.1
1,778,649	-		BBR_RS17820	0.55	-1.5
1,778,658	+		BBR_RS17820	0.56	-1.2
1,778,660	+		BBR_RS17820	0.56	+0.8
1,778,660	+		BBR_RS17820	0.56	+1.1
1,778,660	+		BBR_RS17820	0.56	-0.4
1,778,666	-		BBR_RS17820	0.57	-0.3
1,778,666	-		BBR_RS17820	0.57	-0.0
1,778,739	-		BBR_RS17820	0.64	+2.1
1,778,746	+		BBR_RS17820	0.65	+2.4
1,778,761	-		BBR_RS17820	0.66	+0.3
1,778,798	-		BBR_RS17820	0.70	+0.3
1,778,801	+		BBR_RS17820	0.71	+0.3
1,778,811	+		BBR_RS17820	0.72	-0.4
1,778,838	+		BBR_RS17820	0.75	-1.2
1,778,838	+		BBR_RS17820	0.75	-3.4
1,778,902	-		BBR_RS17820	0.81	+0.1
1,778,910	-		BBR_RS17820	0.82	+0.0
1,778,929	-		BBR_RS17820	0.84	+0.1
1,778,946	-		BBR_RS17820	0.86	+1.7
1,779,032	+				-0.6