Experiment: Xylemvessel barcodes T0L1P3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.984.1 and Xcc-8004.986.1 are separated by 395 nucleotides Xcc-8004.986.1 and Xcc-8004.987.1 are separated by 8 nucleotides Xcc-8004.987.1 and Xcc-8004.988.1 are separated by 122 nucleotides
Xcc-8004.984.1: Xcc-8004.984.1 - S-formylglutathione hydrolase (EC 3.1.2.12), at 934,065 to 934,895
Xcc-8004.984.1
Xcc-8004.986.1: Xcc-8004.986.1 - hypothetical protein, at 935,291 to 936,322
Xcc-8004.986.1
Xcc-8004.987.1: Xcc-8004.987.1 - hypothetical protein, at 936,331 to 936,711
Xcc-8004.987.1
Xcc-8004.988.1: Xcc-8004.988.1 - Phenazine biosynthesis protein PhzF like, at 936,834 to 937,625
Xcc-8004.988.1
Position (kb) 935
936
937 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 934.344 kb on + strand, within Xcc-8004.984.1 at 934.345 kb on - strand, within Xcc-8004.984.1 at 934.371 kb on + strand, within Xcc-8004.984.1 at 934.371 kb on + strand, within Xcc-8004.984.1 at 934.416 kb on + strand, within Xcc-8004.984.1 at 934.417 kb on - strand, within Xcc-8004.984.1 at 934.477 kb on + strand, within Xcc-8004.984.1 at 934.656 kb on + strand, within Xcc-8004.984.1 at 934.657 kb on - strand, within Xcc-8004.984.1 at 934.657 kb on - strand, within Xcc-8004.984.1 at 934.759 kb on + strand, within Xcc-8004.984.1 at 934.830 kb on + strand at 934.830 kb on + strand at 934.831 kb on - strand at 934.831 kb on - strand at 934.831 kb on - strand at 934.834 kb on - strand at 934.862 kb on + strand at 934.862 kb on + strand at 934.862 kb on + strand at 934.862 kb on + strand at 934.863 kb on - strand at 934.931 kb on - strand at 934.961 kb on + strand at 934.962 kb on - strand at 935.068 kb on + strand at 935.114 kb on + strand at 935.232 kb on + strand at 935.233 kb on - strand at 935.279 kb on + strand at 935.280 kb on - strand at 935.409 kb on + strand, within Xcc-8004.986.1 at 935.410 kb on - strand, within Xcc-8004.986.1 at 935.856 kb on + strand, within Xcc-8004.986.1 at 935.856 kb on + strand, within Xcc-8004.986.1 at 935.860 kb on + strand, within Xcc-8004.986.1 at 936.279 kb on + strand at 936.279 kb on + strand at 936.280 kb on - strand at 936.280 kb on - strand at 936.280 kb on - strand at 936.280 kb on - strand at 936.308 kb on + strand at 936.309 kb on - strand at 936.350 kb on + strand at 936.701 kb on + strand at 936.702 kb on - strand at 936.732 kb on + strand at 936.733 kb on - strand at 936.747 kb on - strand at 936.751 kb on + strand at 936.866 kb on + strand at 936.867 kb on - strand at 937.074 kb on + strand, within Xcc-8004.988.1 at 937.075 kb on - strand, within Xcc-8004.988.1 at 937.075 kb on - strand, within Xcc-8004.988.1 at 937.166 kb on + strand, within Xcc-8004.988.1 at 937.167 kb on - strand, within Xcc-8004.988.1 at 937.167 kb on - strand, within Xcc-8004.988.1 at 937.263 kb on + strand, within Xcc-8004.988.1 at 937.263 kb on + strand, within Xcc-8004.988.1 at 937.264 kb on - strand, within Xcc-8004.988.1 at 937.281 kb on + strand, within Xcc-8004.988.1 at 937.293 kb on + strand, within Xcc-8004.988.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3 remove 934,344 + Xcc-8004.984.1 0.34 -2.7 934,345 - Xcc-8004.984.1 0.34 +0.4 934,371 + Xcc-8004.984.1 0.37 -0.4 934,371 + Xcc-8004.984.1 0.37 +0.7 934,416 + Xcc-8004.984.1 0.42 -3.0 934,417 - Xcc-8004.984.1 0.42 -0.7 934,477 + Xcc-8004.984.1 0.50 -1.2 934,656 + Xcc-8004.984.1 0.71 -2.1 934,657 - Xcc-8004.984.1 0.71 -1.0 934,657 - Xcc-8004.984.1 0.71 -2.7 934,759 + Xcc-8004.984.1 0.84 +1.2 934,830 + -2.3 934,830 + -0.5 934,831 - -2.8 934,831 - +1.3 934,831 - -1.3 934,834 - +1.8 934,862 + -0.9 934,862 + -1.7 934,862 + -2.0 934,862 + -1.4 934,863 - -1.9 934,931 - +0.8 934,961 + -2.6 934,962 - +1.4 935,068 + -0.1 935,114 + +1.3 935,232 + +0.2 935,233 - +1.7 935,279 + -1.7 935,280 - -2.3 935,409 + Xcc-8004.986.1 0.11 -1.9 935,410 - Xcc-8004.986.1 0.12 -3.4 935,856 + Xcc-8004.986.1 0.55 -1.6 935,856 + Xcc-8004.986.1 0.55 +0.1 935,860 + Xcc-8004.986.1 0.55 -2.0 936,279 + +0.3 936,279 + -0.1 936,280 - +0.5 936,280 - +1.3 936,280 - -2.2 936,280 - +1.4 936,308 + +2.1 936,309 - -0.2 936,350 + -1.6 936,701 + +1.3 936,702 - -2.0 936,732 + -1.4 936,733 - +1.9 936,747 - +2.7 936,751 + -2.0 936,866 + +0.2 936,867 - +1.0 937,074 + Xcc-8004.988.1 0.30 -1.4 937,075 - Xcc-8004.988.1 0.30 +2.8 937,075 - Xcc-8004.988.1 0.30 +0.1 937,166 + Xcc-8004.988.1 0.42 +0.8 937,167 - Xcc-8004.988.1 0.42 +0.5 937,167 - Xcc-8004.988.1 0.42 -0.1 937,263 + Xcc-8004.988.1 0.54 -2.1 937,263 + Xcc-8004.988.1 0.54 +0.4 937,264 - Xcc-8004.988.1 0.54 -0.5 937,281 + Xcc-8004.988.1 0.56 -0.3 937,293 + Xcc-8004.988.1 0.58 +0.5
Or see this region's nucleotide sequence