Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.977.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.976.1 and Xcc-8004.977.1 are separated by 173 nucleotidesXcc-8004.977.1 and Xcc-8004.978.1 are separated by 64 nucleotides Xcc-8004.976.1: Xcc-8004.976.1 - FIG01209789: hypothetical protein, at 927,674 to 928,771 Xcc-8004.976.1 Xcc-8004.977.1: Xcc-8004.977.1 - hypothetical protein, at 928,945 to 929,451 Xcc-8004.977.1 Xcc-8004.978.1: Xcc-8004.978.1 - C4-dicarboxylate transporter/malic acid transport protein, at 929,516 to 930,697 Xcc-8004.978.1 Position (kb) 928 929 930Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 927.968 kb on + strand, within Xcc-8004.976.1at 927.969 kb on - strand, within Xcc-8004.976.1at 928.127 kb on + strand, within Xcc-8004.976.1at 928.127 kb on + strand, within Xcc-8004.976.1at 928.127 kb on + strand, within Xcc-8004.976.1at 928.127 kb on + strand, within Xcc-8004.976.1at 928.128 kb on - strand, within Xcc-8004.976.1at 928.128 kb on - strand, within Xcc-8004.976.1at 928.128 kb on - strand, within Xcc-8004.976.1at 928.205 kb on - strand, within Xcc-8004.976.1at 928.205 kb on - strand, within Xcc-8004.976.1at 928.205 kb on - strand, within Xcc-8004.976.1at 928.390 kb on + strand, within Xcc-8004.976.1at 928.424 kb on + strand, within Xcc-8004.976.1at 928.425 kb on - strand, within Xcc-8004.976.1at 928.425 kb on - strand, within Xcc-8004.976.1at 928.425 kb on - strand, within Xcc-8004.976.1at 928.556 kb on + strand, within Xcc-8004.976.1at 928.557 kb on - strand, within Xcc-8004.976.1at 928.557 kb on - strand, within Xcc-8004.976.1at 928.557 kb on - strand, within Xcc-8004.976.1at 928.557 kb on - strand, within Xcc-8004.976.1at 928.562 kb on + strand, within Xcc-8004.976.1at 928.562 kb on + strand, within Xcc-8004.976.1at 928.562 kb on + strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.658 kb on + strand, within Xcc-8004.976.1at 928.658 kb on + strand, within Xcc-8004.976.1at 928.658 kb on + strand, within Xcc-8004.976.1at 928.658 kb on + strand, within Xcc-8004.976.1at 928.659 kb on - strand, within Xcc-8004.976.1at 928.659 kb on - strand, within Xcc-8004.976.1at 928.790 kb on + strandat 928.790 kb on + strandat 928.814 kb on - strandat 928.814 kb on - strandat 928.814 kb on - strandat 928.928 kb on + strandat 928.929 kb on - strandat 928.929 kb on - strandat 929.101 kb on - strand, within Xcc-8004.977.1at 929.166 kb on + strand, within Xcc-8004.977.1at 929.166 kb on + strand, within Xcc-8004.977.1at 929.166 kb on + strand, within Xcc-8004.977.1at 929.167 kb on - strand, within Xcc-8004.977.1at 929.167 kb on - strand, within Xcc-8004.977.1at 929.167 kb on - strand, within Xcc-8004.977.1at 929.177 kb on + strand, within Xcc-8004.977.1at 929.178 kb on - strand, within Xcc-8004.977.1at 929.512 kb on + strandat 929.512 kb on + strandat 929.512 kb on + strandat 929.513 kb on - strandat 929.627 kb on + strandat 929.643 kb on - strand, within Xcc-8004.978.1at 929.643 kb on - strand, within Xcc-8004.978.1at 929.643 kb on - strand, within Xcc-8004.978.1at 929.655 kb on - strand, within Xcc-8004.978.1at 929.773 kb on - strand, within Xcc-8004.978.1at 929.921 kb on + strand, within Xcc-8004.978.1at 929.921 kb on + strand, within Xcc-8004.978.1at 929.922 kb on - strand, within Xcc-8004.978.1at 930.060 kb on + strand, within Xcc-8004.978.1at 930.177 kb on - strand, within Xcc-8004.978.1at 930.183 kb on - strand, within Xcc-8004.978.1at 930.183 kb on - strand, within Xcc-8004.978.1at 930.220 kb on + strand, within Xcc-8004.978.1at 930.232 kb on - strand, within Xcc-8004.978.1at 930.330 kb on + strand, within Xcc-8004.978.1at 930.331 kb on - strand, within Xcc-8004.978.1at 930.331 kb on - strand, within Xcc-8004.978.1at 930.373 kb on + strand, within Xcc-8004.978.1at 930.373 kb on + strand, within Xcc-8004.978.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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927,968 + Xcc-8004.976.1 0.27 -0.8
927,969 - Xcc-8004.976.1 0.27 +0.5
928,127 + Xcc-8004.976.1 0.41 -1.5
928,127 + Xcc-8004.976.1 0.41 +0.3
928,127 + Xcc-8004.976.1 0.41 -1.3
928,127 + Xcc-8004.976.1 0.41 -1.3
928,128 - Xcc-8004.976.1 0.41 -0.6
928,128 - Xcc-8004.976.1 0.41 -1.7
928,128 - Xcc-8004.976.1 0.41 -0.9
928,205 - Xcc-8004.976.1 0.48 +0.4
928,205 - Xcc-8004.976.1 0.48 -2.2
928,205 - Xcc-8004.976.1 0.48 +0.4
928,390 + Xcc-8004.976.1 0.65 +0.4
928,424 + Xcc-8004.976.1 0.68 -1.4
928,425 - Xcc-8004.976.1 0.68 -1.9
928,425 - Xcc-8004.976.1 0.68 -0.1
928,425 - Xcc-8004.976.1 0.68 -3.2
928,556 + Xcc-8004.976.1 0.80 +1.2
928,557 - Xcc-8004.976.1 0.80 +1.5
928,557 - Xcc-8004.976.1 0.80 +2.9
928,557 - Xcc-8004.976.1 0.80 +1.0
928,557 - Xcc-8004.976.1 0.80 -0.9
928,562 + Xcc-8004.976.1 0.81 +1.3
928,562 + Xcc-8004.976.1 0.81 -0.2
928,562 + Xcc-8004.976.1 0.81 -0.9
928,563 - Xcc-8004.976.1 0.81 +1.6
928,563 - Xcc-8004.976.1 0.81 +0.9
928,563 - Xcc-8004.976.1 0.81 -1.1
928,563 - Xcc-8004.976.1 0.81 +0.9
928,563 - Xcc-8004.976.1 0.81 -0.8
928,563 - Xcc-8004.976.1 0.81 +0.8
928,658 + Xcc-8004.976.1 0.90 +1.3
928,658 + Xcc-8004.976.1 0.90 -2.4
928,658 + Xcc-8004.976.1 0.90 -0.3
928,658 + Xcc-8004.976.1 0.90 +0.7
928,659 - Xcc-8004.976.1 0.90 -1.6
928,659 - Xcc-8004.976.1 0.90 +1.0
928,790 + -0.8
928,790 + +0.8
928,814 - -0.7
928,814 - -1.6
928,814 - +0.5
928,928 + +1.2
928,929 - +3.2
928,929 - +1.2
929,101 - Xcc-8004.977.1 0.31 +1.4
929,166 + Xcc-8004.977.1 0.44 -0.1
929,166 + Xcc-8004.977.1 0.44 +0.1
929,166 + Xcc-8004.977.1 0.44 +0.3
929,167 - Xcc-8004.977.1 0.44 +1.7
929,167 - Xcc-8004.977.1 0.44 +1.5
929,167 - Xcc-8004.977.1 0.44 +2.6
929,177 + Xcc-8004.977.1 0.46 -0.4
929,178 - Xcc-8004.977.1 0.46 +0.7
929,512 + -1.7
929,512 + -1.6
929,512 + -0.2
929,513 - +0.0
929,627 + -1.1
929,643 - Xcc-8004.978.1 0.11 -0.7
929,643 - Xcc-8004.978.1 0.11 -0.7
929,643 - Xcc-8004.978.1 0.11 +0.7
929,655 - Xcc-8004.978.1 0.12 +0.3
929,773 - Xcc-8004.978.1 0.22 +0.9
929,921 + Xcc-8004.978.1 0.34 -2.3
929,921 + Xcc-8004.978.1 0.34 -1.7
929,922 - Xcc-8004.978.1 0.34 +0.5
930,060 + Xcc-8004.978.1 0.46 -2.3
930,177 - Xcc-8004.978.1 0.56 +0.3
930,183 - Xcc-8004.978.1 0.56 +3.0
930,183 - Xcc-8004.978.1 0.56 +2.2
930,220 + Xcc-8004.978.1 0.60 +2.6
930,232 - Xcc-8004.978.1 0.61 +1.3
930,330 + Xcc-8004.978.1 0.69 +0.0
930,331 - Xcc-8004.978.1 0.69 +1.6
930,331 - Xcc-8004.978.1 0.69 +0.8
930,373 + Xcc-8004.978.1 0.73 -0.9
930,373 + Xcc-8004.978.1 0.73 -2.8

Or see this region's nucleotide sequence