Experiment: Xylemvessel barcodes T0L1P3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.954.1 and Xcc-8004.955.1 are separated by 10 nucleotides Xcc-8004.955.1 and Xcc-8004.956.1 are separated by 6 nucleotides
Xcc-8004.954.1: Xcc-8004.954.1 - N-acetyl glucosamine transporter, NagP, at 897,129 to 898,406
Xcc-8004.954.1
Xcc-8004.955.1: Xcc-8004.955.1 - Predicted transcriptional regulator of N-Acetylglucosamine utilization, LacI family, at 898,417 to 899,514
Xcc-8004.955.1
Xcc-8004.956.1: Xcc-8004.956.1 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6), at 899,521 to 900,549
Xcc-8004.956.1
Position (kb) 898
899
900 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 897.504 kb on + strand, within Xcc-8004.954.1 at 897.504 kb on + strand, within Xcc-8004.954.1 at 897.505 kb on - strand, within Xcc-8004.954.1 at 897.505 kb on - strand, within Xcc-8004.954.1 at 897.567 kb on - strand, within Xcc-8004.954.1 at 897.714 kb on + strand, within Xcc-8004.954.1 at 897.714 kb on + strand, within Xcc-8004.954.1 at 897.715 kb on - strand, within Xcc-8004.954.1 at 897.715 kb on - strand, within Xcc-8004.954.1 at 897.889 kb on - strand, within Xcc-8004.954.1 at 897.889 kb on - strand, within Xcc-8004.954.1 at 897.930 kb on + strand, within Xcc-8004.954.1 at 897.982 kb on - strand, within Xcc-8004.954.1 at 898.009 kb on - strand, within Xcc-8004.954.1 at 898.009 kb on - strand, within Xcc-8004.954.1 at 898.119 kb on + strand, within Xcc-8004.954.1 at 898.120 kb on - strand, within Xcc-8004.954.1 at 898.300 kb on - strand at 898.300 kb on - strand at 898.300 kb on - strand at 898.348 kb on - strand at 898.348 kb on - strand at 898.360 kb on - strand at 898.447 kb on - strand at 898.955 kb on - strand, within Xcc-8004.955.1 at 899.053 kb on + strand, within Xcc-8004.955.1 at 899.116 kb on + strand, within Xcc-8004.955.1 at 899.116 kb on + strand, within Xcc-8004.955.1 at 899.117 kb on - strand, within Xcc-8004.955.1 at 899.117 kb on - strand, within Xcc-8004.955.1 at 899.254 kb on + strand, within Xcc-8004.955.1 at 899.395 kb on + strand, within Xcc-8004.955.1 at 899.705 kb on - strand, within Xcc-8004.956.1 at 899.705 kb on - strand, within Xcc-8004.956.1 at 899.713 kb on + strand, within Xcc-8004.956.1 at 899.714 kb on - strand, within Xcc-8004.956.1 at 899.714 kb on - strand, within Xcc-8004.956.1 at 899.776 kb on + strand, within Xcc-8004.956.1 at 899.776 kb on + strand, within Xcc-8004.956.1 at 899.777 kb on - strand, within Xcc-8004.956.1 at 899.777 kb on - strand, within Xcc-8004.956.1 at 899.777 kb on - strand, within Xcc-8004.956.1 at 899.777 kb on - strand, within Xcc-8004.956.1 at 899.809 kb on + strand, within Xcc-8004.956.1 at 899.809 kb on + strand, within Xcc-8004.956.1 at 899.810 kb on - strand, within Xcc-8004.956.1 at 899.992 kb on + strand, within Xcc-8004.956.1 at 899.992 kb on + strand, within Xcc-8004.956.1 at 899.993 kb on - strand, within Xcc-8004.956.1 at 899.993 kb on - strand, within Xcc-8004.956.1 at 899.993 kb on - strand, within Xcc-8004.956.1 at 899.993 kb on - strand, within Xcc-8004.956.1 at 900.238 kb on + strand, within Xcc-8004.956.1 at 900.238 kb on + strand, within Xcc-8004.956.1 at 900.238 kb on + strand, within Xcc-8004.956.1 at 900.239 kb on - strand, within Xcc-8004.956.1 at 900.239 kb on - strand, within Xcc-8004.956.1 at 900.502 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3 remove 897,504 + Xcc-8004.954.1 0.29 -3.4 897,504 + Xcc-8004.954.1 0.29 +0.3 897,505 - Xcc-8004.954.1 0.29 -1.8 897,505 - Xcc-8004.954.1 0.29 -1.2 897,567 - Xcc-8004.954.1 0.34 -1.7 897,714 + Xcc-8004.954.1 0.46 -1.9 897,714 + Xcc-8004.954.1 0.46 -1.7 897,715 - Xcc-8004.954.1 0.46 +0.5 897,715 - Xcc-8004.954.1 0.46 +1.0 897,889 - Xcc-8004.954.1 0.59 -0.1 897,889 - Xcc-8004.954.1 0.59 +1.3 897,930 + Xcc-8004.954.1 0.63 +0.8 897,982 - Xcc-8004.954.1 0.67 -2.5 898,009 - Xcc-8004.954.1 0.69 +0.4 898,009 - Xcc-8004.954.1 0.69 -1.7 898,119 + Xcc-8004.954.1 0.77 -0.5 898,120 - Xcc-8004.954.1 0.78 +2.3 898,300 - +0.3 898,300 - +3.8 898,300 - -3.1 898,348 - -0.1 898,348 - -1.7 898,360 - +1.2 898,447 - +1.2 898,955 - Xcc-8004.955.1 0.49 -0.1 899,053 + Xcc-8004.955.1 0.58 -2.5 899,116 + Xcc-8004.955.1 0.64 -1.7 899,116 + Xcc-8004.955.1 0.64 -1.3 899,117 - Xcc-8004.955.1 0.64 -2.6 899,117 - Xcc-8004.955.1 0.64 -2.0 899,254 + Xcc-8004.955.1 0.76 -1.0 899,395 + Xcc-8004.955.1 0.89 -0.0 899,705 - Xcc-8004.956.1 0.18 +2.0 899,705 - Xcc-8004.956.1 0.18 +0.8 899,713 + Xcc-8004.956.1 0.19 -0.3 899,714 - Xcc-8004.956.1 0.19 +0.2 899,714 - Xcc-8004.956.1 0.19 +3.6 899,776 + Xcc-8004.956.1 0.25 +0.5 899,776 + Xcc-8004.956.1 0.25 +1.7 899,777 - Xcc-8004.956.1 0.25 +4.7 899,777 - Xcc-8004.956.1 0.25 -2.5 899,777 - Xcc-8004.956.1 0.25 -1.6 899,777 - Xcc-8004.956.1 0.25 -0.8 899,809 + Xcc-8004.956.1 0.28 +0.2 899,809 + Xcc-8004.956.1 0.28 +0.1 899,810 - Xcc-8004.956.1 0.28 -1.5 899,992 + Xcc-8004.956.1 0.46 -2.5 899,992 + Xcc-8004.956.1 0.46 +1.7 899,993 - Xcc-8004.956.1 0.46 +0.0 899,993 - Xcc-8004.956.1 0.46 +0.3 899,993 - Xcc-8004.956.1 0.46 -2.0 899,993 - Xcc-8004.956.1 0.46 +0.6 900,238 + Xcc-8004.956.1 0.70 -0.9 900,238 + Xcc-8004.956.1 0.70 -1.3 900,238 + Xcc-8004.956.1 0.70 -0.5 900,239 - Xcc-8004.956.1 0.70 +0.5 900,239 - Xcc-8004.956.1 0.70 -3.7 900,502 - +0.8
Or see this region's nucleotide sequence