Experiment: Xylemvessel barcodes T0L1P3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.942.1 and Xcc-8004.943.1 are separated by 4 nucleotides Xcc-8004.943.1 and Xcc-8004.944.1 overlap by 14 nucleotides
Xcc-8004.942.1: Xcc-8004.942.1 - hypothetical protein, at 886,045 to 888,117
Xcc-8004.942.1
Xcc-8004.943.1: Xcc-8004.943.1 - General secretion pathway protein E, at 888,122 to 889,621
Xcc-8004.943.1
Xcc-8004.944.1: Xcc-8004.944.1 - General secretion pathway protein F, at 889,608 to 890,804
Xcc-8004.944.1
Position (kb) 888
889
890 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 887.228 kb on - strand, within Xcc-8004.942.1 at 887.520 kb on + strand, within Xcc-8004.942.1 at 887.521 kb on - strand, within Xcc-8004.942.1 at 887.604 kb on - strand, within Xcc-8004.942.1 at 887.604 kb on - strand, within Xcc-8004.942.1 at 887.604 kb on - strand, within Xcc-8004.942.1 at 887.950 kb on + strand at 887.951 kb on - strand at 887.956 kb on + strand at 887.956 kb on + strand at 887.957 kb on - strand at 888.338 kb on + strand, within Xcc-8004.943.1 at 888.339 kb on - strand, within Xcc-8004.943.1 at 888.339 kb on - strand, within Xcc-8004.943.1 at 888.339 kb on - strand, within Xcc-8004.943.1 at 888.533 kb on + strand, within Xcc-8004.943.1 at 888.917 kb on + strand, within Xcc-8004.943.1 at 888.983 kb on + strand, within Xcc-8004.943.1 at 889.345 kb on + strand, within Xcc-8004.943.1 at 889.345 kb on + strand, within Xcc-8004.943.1 at 889.400 kb on + strand, within Xcc-8004.943.1 at 889.401 kb on - strand, within Xcc-8004.943.1 at 889.421 kb on + strand, within Xcc-8004.943.1 at 889.421 kb on + strand, within Xcc-8004.943.1 at 889.422 kb on - strand, within Xcc-8004.943.1 at 889.422 kb on - strand, within Xcc-8004.943.1 at 889.507 kb on - strand at 889.624 kb on - strand at 889.853 kb on + strand, within Xcc-8004.944.1 at 889.853 kb on + strand, within Xcc-8004.944.1 at 890.592 kb on + strand, within Xcc-8004.944.1 at 890.593 kb on - strand, within Xcc-8004.944.1 at 890.593 kb on - strand, within Xcc-8004.944.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3 remove 887,228 - Xcc-8004.942.1 0.57 +0.1 887,520 + Xcc-8004.942.1 0.71 +0.2 887,521 - Xcc-8004.942.1 0.71 +1.6 887,604 - Xcc-8004.942.1 0.75 -1.5 887,604 - Xcc-8004.942.1 0.75 +2.2 887,604 - Xcc-8004.942.1 0.75 -1.5 887,950 + +2.1 887,951 - +1.9 887,956 + -0.7 887,956 + +2.0 887,957 - -0.6 888,338 + Xcc-8004.943.1 0.14 +0.4 888,339 - Xcc-8004.943.1 0.14 +1.0 888,339 - Xcc-8004.943.1 0.14 +0.2 888,339 - Xcc-8004.943.1 0.14 -1.8 888,533 + Xcc-8004.943.1 0.27 -1.6 888,917 + Xcc-8004.943.1 0.53 -0.8 888,983 + Xcc-8004.943.1 0.57 -2.3 889,345 + Xcc-8004.943.1 0.82 -1.5 889,345 + Xcc-8004.943.1 0.82 -2.6 889,400 + Xcc-8004.943.1 0.85 -1.6 889,401 - Xcc-8004.943.1 0.85 +0.5 889,421 + Xcc-8004.943.1 0.87 +0.2 889,421 + Xcc-8004.943.1 0.87 +0.2 889,422 - Xcc-8004.943.1 0.87 -1.8 889,422 - Xcc-8004.943.1 0.87 -3.0 889,507 - -0.6 889,624 - -1.1 889,853 + Xcc-8004.944.1 0.20 -1.1 889,853 + Xcc-8004.944.1 0.20 +0.3 890,592 + Xcc-8004.944.1 0.82 +0.7 890,593 - Xcc-8004.944.1 0.82 +0.6 890,593 - Xcc-8004.944.1 0.82 +0.2
Or see this region's nucleotide sequence