Experiment: Xylemvessel barcodes T0L1P3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.737.1 and Xcc-8004.738.1 overlap by 4 nucleotides Xcc-8004.738.1 and Xcc-8004.739.1 are separated by 2 nucleotides Xcc-8004.739.1 and Xcc-8004.740.1 overlap by 4 nucleotides
Xcc-8004.737.1: Xcc-8004.737.1 - Malonate decarboxylase beta subunit, at 686,499 to 687,413
Xcc-8004.737.1
Xcc-8004.738.1: Xcc-8004.738.1 - Malonate decarboxylase gamma subunit, at 687,410 to 688,114
Xcc-8004.738.1
Xcc-8004.739.1: Xcc-8004.739.1 - Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-), at 688,117 to 688,758
Xcc-8004.739.1
Xcc-8004.740.1: Xcc-8004.740.1 - Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25), at 688,755 to 689,921
Xcc-8004.740.1
Position (kb) 688
689 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 687.133 kb on - strand, within Xcc-8004.737.1 at 687.686 kb on + strand, within Xcc-8004.738.1 at 687.687 kb on - strand, within Xcc-8004.738.1 at 687.942 kb on - strand, within Xcc-8004.738.1 at 687.950 kb on - strand, within Xcc-8004.738.1 at 688.501 kb on + strand, within Xcc-8004.739.1 at 688.501 kb on + strand, within Xcc-8004.739.1 at 688.501 kb on + strand, within Xcc-8004.739.1 at 688.502 kb on - strand, within Xcc-8004.739.1 at 688.502 kb on - strand, within Xcc-8004.739.1 at 688.664 kb on - strand, within Xcc-8004.739.1 at 688.760 kb on + strand at 688.933 kb on + strand, within Xcc-8004.740.1 at 688.934 kb on - strand, within Xcc-8004.740.1 at 688.962 kb on - strand, within Xcc-8004.740.1 at 689.048 kb on + strand, within Xcc-8004.740.1 at 689.602 kb on + strand, within Xcc-8004.740.1 at 689.702 kb on - strand, within Xcc-8004.740.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3 remove 687,133 - Xcc-8004.737.1 0.69 -1.2 687,686 + Xcc-8004.738.1 0.39 -0.6 687,687 - Xcc-8004.738.1 0.39 -1.0 687,942 - Xcc-8004.738.1 0.75 +0.5 687,950 - Xcc-8004.738.1 0.77 -1.0 688,501 + Xcc-8004.739.1 0.60 -1.5 688,501 + Xcc-8004.739.1 0.60 -2.1 688,501 + Xcc-8004.739.1 0.60 -0.1 688,502 - Xcc-8004.739.1 0.60 -0.7 688,502 - Xcc-8004.739.1 0.60 -0.1 688,664 - Xcc-8004.739.1 0.85 -0.3 688,760 + +0.7 688,933 + Xcc-8004.740.1 0.15 +1.3 688,934 - Xcc-8004.740.1 0.15 +3.3 688,962 - Xcc-8004.740.1 0.18 -1.7 689,048 + Xcc-8004.740.1 0.25 -0.1 689,602 + Xcc-8004.740.1 0.73 -0.1 689,702 - Xcc-8004.740.1 0.81 -0.2
Or see this region's nucleotide sequence