Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.675.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.673.1 and Xcc-8004.674.1 are separated by 73 nucleotidesXcc-8004.674.1 and Xcc-8004.675.1 are separated by 1 nucleotidesXcc-8004.675.1 and Xcc-8004.676.1 are separated by 465 nucleotides Xcc-8004.673.1: Xcc-8004.673.1 - Transcriptional regulator pbsX family, at 618,915 to 619,367 Xcc-8004.673.1 Xcc-8004.674.1: Xcc-8004.674.1 - FIG01211343: hypothetical protein, at 619,441 to 619,935 Xcc-8004.674.1 Xcc-8004.675.1: Xcc-8004.675.1 - Ribosomal protein L11 methyltransferase (EC 2.1.1.-), at 619,937 to 620,857 Xcc-8004.675.1 Xcc-8004.676.1: Xcc-8004.676.1 - FIG01210799: hypothetical protein, at 621,323 to 622,243 Xcc-8004.676.1 Position (kb) 619 620 621Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 619.037 kb on - strand, within Xcc-8004.673.1at 619.108 kb on + strand, within Xcc-8004.673.1at 619.109 kb on - strand, within Xcc-8004.673.1at 619.109 kb on - strand, within Xcc-8004.673.1at 619.109 kb on - strand, within Xcc-8004.673.1at 619.109 kb on - strand, within Xcc-8004.673.1at 619.109 kb on - strand, within Xcc-8004.673.1at 619.269 kb on + strand, within Xcc-8004.673.1at 619.269 kb on + strand, within Xcc-8004.673.1at 619.269 kb on + strand, within Xcc-8004.673.1at 619.270 kb on - strand, within Xcc-8004.673.1at 619.270 kb on - strand, within Xcc-8004.673.1at 619.270 kb on - strand, within Xcc-8004.673.1at 619.279 kb on + strand, within Xcc-8004.673.1at 619.279 kb on + strand, within Xcc-8004.673.1at 619.279 kb on + strand, within Xcc-8004.673.1at 619.279 kb on + strand, within Xcc-8004.673.1at 619.279 kb on + strand, within Xcc-8004.673.1at 619.279 kb on + strand, within Xcc-8004.673.1at 619.279 kb on + strand, within Xcc-8004.673.1at 619.279 kb on + strand, within Xcc-8004.673.1at 619.280 kb on - strand, within Xcc-8004.673.1at 619.280 kb on - strand, within Xcc-8004.673.1at 619.280 kb on - strand, within Xcc-8004.673.1at 619.280 kb on - strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.282 kb on - strand, within Xcc-8004.673.1at 619.282 kb on - strand, within Xcc-8004.673.1at 619.282 kb on - strand, within Xcc-8004.673.1at 619.282 kb on - strand, within Xcc-8004.673.1at 619.325 kb on + strandat 619.325 kb on + strandat 619.325 kb on + strandat 619.325 kb on + strandat 619.325 kb on + strandat 619.325 kb on + strandat 619.325 kb on + strandat 619.326 kb on - strandat 619.326 kb on - strandat 619.326 kb on - strandat 619.326 kb on - strandat 619.326 kb on - strandat 619.326 kb on - strandat 619.327 kb on + strandat 619.327 kb on + strandat 619.327 kb on + strandat 619.327 kb on + strandat 619.327 kb on + strandat 619.328 kb on - strandat 619.328 kb on - strandat 619.328 kb on - strandat 619.328 kb on - strandat 619.349 kb on + strandat 619.349 kb on + strandat 619.350 kb on - strandat 619.350 kb on - strandat 619.350 kb on - strandat 619.356 kb on + strandat 619.357 kb on - strandat 619.357 kb on - strandat 619.357 kb on - strandat 619.357 kb on - strandat 619.386 kb on + strandat 619.514 kb on - strand, within Xcc-8004.674.1at 619.561 kb on + strand, within Xcc-8004.674.1at 619.965 kb on - strandat 619.981 kb on - strandat 619.981 kb on - strandat 619.981 kb on - strandat 620.013 kb on + strandat 620.014 kb on - strandat 620.131 kb on + strand, within Xcc-8004.675.1at 620.151 kb on + strand, within Xcc-8004.675.1at 620.151 kb on + strand, within Xcc-8004.675.1at 620.151 kb on + strand, within Xcc-8004.675.1at 620.151 kb on + strand, within Xcc-8004.675.1at 620.152 kb on - strand, within Xcc-8004.675.1at 620.181 kb on + strand, within Xcc-8004.675.1at 620.181 kb on + strand, within Xcc-8004.675.1at 620.181 kb on + strand, within Xcc-8004.675.1at 620.181 kb on + strand, within Xcc-8004.675.1at 620.181 kb on + strand, within Xcc-8004.675.1at 620.181 kb on + strand, within Xcc-8004.675.1at 620.181 kb on + strand, within Xcc-8004.675.1at 620.181 kb on + strand, within Xcc-8004.675.1at 620.181 kb on + strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.253 kb on + strand, within Xcc-8004.675.1at 620.253 kb on + strand, within Xcc-8004.675.1at 620.253 kb on + strand, within Xcc-8004.675.1at 620.254 kb on - strand, within Xcc-8004.675.1at 620.254 kb on - strand, within Xcc-8004.675.1at 620.254 kb on - strand, within Xcc-8004.675.1at 620.889 kb on + strandat 620.889 kb on + strandat 620.890 kb on - strandat 620.944 kb on - strandat 620.944 kb on - strandat 621.270 kb on + strandat 621.270 kb on + strandat 621.270 kb on + strandat 621.270 kb on + strandat 621.270 kb on + strandat 621.270 kb on + strandat 621.271 kb on - strandat 621.271 kb on - strandat 621.271 kb on - strandat 621.551 kb on + strand, within Xcc-8004.676.1at 621.551 kb on + strand, within Xcc-8004.676.1at 621.557 kb on + strand, within Xcc-8004.676.1at 621.626 kb on + strand, within Xcc-8004.676.1at 621.626 kb on + strand, within Xcc-8004.676.1at 621.627 kb on - strand, within Xcc-8004.676.1at 621.627 kb on - strand, within Xcc-8004.676.1at 621.627 kb on - strand, within Xcc-8004.676.1at 621.632 kb on + strand, within Xcc-8004.676.1at 621.633 kb on - strand, within Xcc-8004.676.1at 621.633 kb on - strand, within Xcc-8004.676.1at 621.633 kb on - strand, within Xcc-8004.676.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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619,037 - Xcc-8004.673.1 0.27 -3.0
619,108 + Xcc-8004.673.1 0.43 +0.2
619,109 - Xcc-8004.673.1 0.43 -0.4
619,109 - Xcc-8004.673.1 0.43 -1.7
619,109 - Xcc-8004.673.1 0.43 -2.3
619,109 - Xcc-8004.673.1 0.43 +1.8
619,109 - Xcc-8004.673.1 0.43 -0.6
619,269 + Xcc-8004.673.1 0.78 +1.4
619,269 + Xcc-8004.673.1 0.78 -0.1
619,269 + Xcc-8004.673.1 0.78 -0.0
619,270 - Xcc-8004.673.1 0.78 +1.1
619,270 - Xcc-8004.673.1 0.78 +2.2
619,270 - Xcc-8004.673.1 0.78 -2.4
619,279 + Xcc-8004.673.1 0.80 -2.5
619,279 + Xcc-8004.673.1 0.80 +1.3
619,279 + Xcc-8004.673.1 0.80 -2.0
619,279 + Xcc-8004.673.1 0.80 +1.3
619,279 + Xcc-8004.673.1 0.80 +1.9
619,279 + Xcc-8004.673.1 0.80 -0.2
619,279 + Xcc-8004.673.1 0.80 -0.4
619,279 + Xcc-8004.673.1 0.80 +1.1
619,280 - Xcc-8004.673.1 0.81 -2.5
619,280 - Xcc-8004.673.1 0.81 -1.0
619,280 - Xcc-8004.673.1 0.81 +0.8
619,280 - Xcc-8004.673.1 0.81 -1.5
619,281 + Xcc-8004.673.1 0.81 +0.6
619,281 + Xcc-8004.673.1 0.81 -3.0
619,281 + Xcc-8004.673.1 0.81 +0.4
619,281 + Xcc-8004.673.1 0.81 -1.8
619,281 + Xcc-8004.673.1 0.81 -0.8
619,281 + Xcc-8004.673.1 0.81 +1.3
619,281 + Xcc-8004.673.1 0.81 +2.0
619,281 + Xcc-8004.673.1 0.81 +0.3
619,281 + Xcc-8004.673.1 0.81 +1.0
619,281 + Xcc-8004.673.1 0.81 -2.0
619,281 + Xcc-8004.673.1 0.81 +1.5
619,281 + Xcc-8004.673.1 0.81 -3.4
619,282 - Xcc-8004.673.1 0.81 -0.3
619,282 - Xcc-8004.673.1 0.81 -0.7
619,282 - Xcc-8004.673.1 0.81 -0.7
619,282 - Xcc-8004.673.1 0.81 +0.7
619,325 + -1.1
619,325 + -2.6
619,325 + +0.0
619,325 + +0.7
619,325 + -1.6
619,325 + -0.8
619,325 + -2.4
619,326 - +1.7
619,326 - -0.2
619,326 - +1.6
619,326 - -1.2
619,326 - -1.8
619,326 - +2.3
619,327 + -0.8
619,327 + +3.5
619,327 + -3.0
619,327 + -2.1
619,327 + -1.2
619,328 - +0.7
619,328 - +0.5
619,328 - -1.1
619,328 - +0.3
619,349 + -1.6
619,349 + +0.7
619,350 - +2.8
619,350 - +1.3
619,350 - -1.6
619,356 + +0.8
619,357 - +0.7
619,357 - +0.8
619,357 - +2.2
619,357 - +0.5
619,386 + +0.4
619,514 - Xcc-8004.674.1 0.15 -0.1
619,561 + Xcc-8004.674.1 0.24 +1.5
619,965 - -0.2
619,981 - -0.1
619,981 - -1.5
619,981 - +2.3
620,013 + -2.2
620,014 - -0.4
620,131 + Xcc-8004.675.1 0.21 -2.6
620,151 + Xcc-8004.675.1 0.23 -1.1
620,151 + Xcc-8004.675.1 0.23 -1.5
620,151 + Xcc-8004.675.1 0.23 -0.9
620,151 + Xcc-8004.675.1 0.23 -1.4
620,152 - Xcc-8004.675.1 0.23 -2.0
620,181 + Xcc-8004.675.1 0.26 -0.1
620,181 + Xcc-8004.675.1 0.26 -2.0
620,181 + Xcc-8004.675.1 0.26 -0.3
620,181 + Xcc-8004.675.1 0.26 +2.2
620,181 + Xcc-8004.675.1 0.26 -0.8
620,181 + Xcc-8004.675.1 0.26 -0.1
620,181 + Xcc-8004.675.1 0.26 +0.2
620,181 + Xcc-8004.675.1 0.26 -1.4
620,181 + Xcc-8004.675.1 0.26 -1.7
620,182 - Xcc-8004.675.1 0.27 +1.4
620,182 - Xcc-8004.675.1 0.27 -2.3
620,182 - Xcc-8004.675.1 0.27 -1.0
620,182 - Xcc-8004.675.1 0.27 -1.5
620,182 - Xcc-8004.675.1 0.27 -1.1
620,182 - Xcc-8004.675.1 0.27 -0.9
620,182 - Xcc-8004.675.1 0.27 -2.2
620,182 - Xcc-8004.675.1 0.27 -3.1
620,182 - Xcc-8004.675.1 0.27 -2.8
620,182 - Xcc-8004.675.1 0.27 +0.5
620,182 - Xcc-8004.675.1 0.27 +1.6
620,182 - Xcc-8004.675.1 0.27 +0.6
620,253 + Xcc-8004.675.1 0.34 -1.0
620,253 + Xcc-8004.675.1 0.34 -2.5
620,253 + Xcc-8004.675.1 0.34 -1.4
620,254 - Xcc-8004.675.1 0.34 -0.8
620,254 - Xcc-8004.675.1 0.34 -2.4
620,254 - Xcc-8004.675.1 0.34 -2.1
620,889 + -0.1
620,889 + +0.6
620,890 - -2.4
620,944 - +0.7
620,944 - -1.1
621,270 + +0.1
621,270 + -3.1
621,270 + +1.0
621,270 + +1.4
621,270 + +0.1
621,270 + +2.2
621,271 - +0.9
621,271 - -0.1
621,271 - -0.6
621,551 + Xcc-8004.676.1 0.25 -3.0
621,551 + Xcc-8004.676.1 0.25 -1.5
621,557 + Xcc-8004.676.1 0.25 +0.7
621,626 + Xcc-8004.676.1 0.33 +1.7
621,626 + Xcc-8004.676.1 0.33 +2.3
621,627 - Xcc-8004.676.1 0.33 -1.2
621,627 - Xcc-8004.676.1 0.33 +0.4
621,627 - Xcc-8004.676.1 0.33 -2.2
621,632 + Xcc-8004.676.1 0.34 -2.8
621,633 - Xcc-8004.676.1 0.34 +0.9
621,633 - Xcc-8004.676.1 0.34 -0.3
621,633 - Xcc-8004.676.1 0.34 +1.7

Or see this region's nucleotide sequence