Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.569.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.565.1 and Xcc-8004.569.1 overlap by 4 nucleotidesXcc-8004.569.1 and Xcc-8004.570.1 are separated by 1 nucleotides Xcc-8004.565.1: Xcc-8004.565.1 - Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168), at 523,475 to 524,983 Xcc-8004.565.1 Xcc-8004.569.1: Xcc-8004.569.1 - FIG01209918: hypothetical protein, at 524,980 to 525,363 Xcc-8004.569.1 Xcc-8004.570.1: Xcc-8004.570.1 - Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4), at 525,365 to 526,435 Xcc-8004.570.1 Position (kb) 524 525 526Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 524.356 kb on + strand, within Xcc-8004.565.1at 524.378 kb on + strand, within Xcc-8004.565.1at 524.378 kb on + strand, within Xcc-8004.565.1at 524.378 kb on + strand, within Xcc-8004.565.1at 524.378 kb on + strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.379 kb on - strand, within Xcc-8004.565.1at 524.495 kb on - strand, within Xcc-8004.565.1at 524.867 kb on + strandat 524.867 kb on + strandat 524.870 kb on + strandat 524.870 kb on + strandat 524.870 kb on + strandat 524.870 kb on + strandat 524.870 kb on + strandat 525.107 kb on + strand, within Xcc-8004.569.1at 525.108 kb on - strand, within Xcc-8004.569.1at 525.108 kb on - strand, within Xcc-8004.569.1at 525.108 kb on - strand, within Xcc-8004.569.1at 525.158 kb on + strand, within Xcc-8004.569.1at 525.158 kb on + strand, within Xcc-8004.569.1at 525.159 kb on - strand, within Xcc-8004.569.1at 525.159 kb on - strand, within Xcc-8004.569.1at 525.327 kb on - strandat 525.327 kb on - strandat 525.451 kb on + strandat 525.451 kb on + strandat 525.451 kb on + strandat 525.451 kb on + strandat 525.451 kb on + strandat 525.462 kb on + strandat 525.462 kb on + strandat 525.462 kb on + strandat 525.463 kb on - strandat 525.498 kb on + strand, within Xcc-8004.570.1at 525.498 kb on + strand, within Xcc-8004.570.1at 525.498 kb on + strand, within Xcc-8004.570.1at 525.498 kb on + strand, within Xcc-8004.570.1at 525.499 kb on - strand, within Xcc-8004.570.1at 525.499 kb on - strand, within Xcc-8004.570.1at 525.499 kb on - strand, within Xcc-8004.570.1at 525.499 kb on - strand, within Xcc-8004.570.1at 525.499 kb on - strand, within Xcc-8004.570.1at 525.499 kb on - strand, within Xcc-8004.570.1at 525.807 kb on + strand, within Xcc-8004.570.1at 525.807 kb on + strand, within Xcc-8004.570.1at 525.807 kb on + strand, within Xcc-8004.570.1at 525.807 kb on + strand, within Xcc-8004.570.1at 525.807 kb on + strand, within Xcc-8004.570.1at 525.808 kb on - strand, within Xcc-8004.570.1at 525.808 kb on - strand, within Xcc-8004.570.1at 525.808 kb on - strand, within Xcc-8004.570.1at 525.808 kb on - strand, within Xcc-8004.570.1at 525.808 kb on - strand, within Xcc-8004.570.1at 525.808 kb on - strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.816 kb on + strand, within Xcc-8004.570.1at 525.817 kb on - strand, within Xcc-8004.570.1at 525.817 kb on - strand, within Xcc-8004.570.1at 525.817 kb on - strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.837 kb on + strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.838 kb on - strand, within Xcc-8004.570.1at 525.882 kb on + strand, within Xcc-8004.570.1at 525.882 kb on + strand, within Xcc-8004.570.1at 525.882 kb on + strand, within Xcc-8004.570.1at 525.883 kb on - strand, within Xcc-8004.570.1at 525.883 kb on - strand, within Xcc-8004.570.1at 525.883 kb on - strand, within Xcc-8004.570.1at 525.883 kb on - strand, within Xcc-8004.570.1at 526.084 kb on - strand, within Xcc-8004.570.1at 526.084 kb on - strand, within Xcc-8004.570.1at 526.253 kb on + strand, within Xcc-8004.570.1at 526.253 kb on + strand, within Xcc-8004.570.1at 526.253 kb on + strand, within Xcc-8004.570.1at 526.253 kb on + strand, within Xcc-8004.570.1at 526.253 kb on + strand, within Xcc-8004.570.1at 526.253 kb on + strand, within Xcc-8004.570.1at 526.254 kb on - strand, within Xcc-8004.570.1at 526.254 kb on - strand, within Xcc-8004.570.1at 526.254 kb on - strand, within Xcc-8004.570.1at 526.254 kb on - strand, within Xcc-8004.570.1at 526.254 kb on - strand, within Xcc-8004.570.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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524,356 + Xcc-8004.565.1 0.58 +1.4
524,378 + Xcc-8004.565.1 0.60 -2.3
524,378 + Xcc-8004.565.1 0.60 +0.6
524,378 + Xcc-8004.565.1 0.60 -1.9
524,378 + Xcc-8004.565.1 0.60 -2.1
524,379 - Xcc-8004.565.1 0.60 -1.3
524,379 - Xcc-8004.565.1 0.60 +1.0
524,379 - Xcc-8004.565.1 0.60 +3.1
524,379 - Xcc-8004.565.1 0.60 +0.5
524,379 - Xcc-8004.565.1 0.60 +1.0
524,379 - Xcc-8004.565.1 0.60 +2.0
524,379 - Xcc-8004.565.1 0.60 +1.5
524,495 - Xcc-8004.565.1 0.68 +0.1
524,867 + -1.1
524,867 + -1.9
524,870 + -0.6
524,870 + -2.2
524,870 + -3.2
524,870 + -0.8
524,870 + +0.7
525,107 + Xcc-8004.569.1 0.33 +0.5
525,108 - Xcc-8004.569.1 0.33 -1.2
525,108 - Xcc-8004.569.1 0.33 -0.2
525,108 - Xcc-8004.569.1 0.33 -2.0
525,158 + Xcc-8004.569.1 0.46 -0.8
525,158 + Xcc-8004.569.1 0.46 -0.8
525,159 - Xcc-8004.569.1 0.47 -1.1
525,159 - Xcc-8004.569.1 0.47 -2.7
525,327 - +1.8
525,327 - -2.4
525,451 + +0.3
525,451 + -1.4
525,451 + +0.5
525,451 + -1.2
525,451 + -1.9
525,462 + +2.5
525,462 + +1.9
525,462 + +1.8
525,463 - -1.6
525,498 + Xcc-8004.570.1 0.12 -3.0
525,498 + Xcc-8004.570.1 0.12 +2.0
525,498 + Xcc-8004.570.1 0.12 +2.5
525,498 + Xcc-8004.570.1 0.12 -2.0
525,499 - Xcc-8004.570.1 0.13 -0.6
525,499 - Xcc-8004.570.1 0.13 -3.0
525,499 - Xcc-8004.570.1 0.13 -0.8
525,499 - Xcc-8004.570.1 0.13 -2.3
525,499 - Xcc-8004.570.1 0.13 -1.7
525,499 - Xcc-8004.570.1 0.13 -1.5
525,807 + Xcc-8004.570.1 0.41 +0.5
525,807 + Xcc-8004.570.1 0.41 -0.2
525,807 + Xcc-8004.570.1 0.41 -2.1
525,807 + Xcc-8004.570.1 0.41 -0.8
525,807 + Xcc-8004.570.1 0.41 +0.6
525,808 - Xcc-8004.570.1 0.41 +2.1
525,808 - Xcc-8004.570.1 0.41 -1.4
525,808 - Xcc-8004.570.1 0.41 +0.6
525,808 - Xcc-8004.570.1 0.41 -0.1
525,808 - Xcc-8004.570.1 0.41 -0.2
525,808 - Xcc-8004.570.1 0.41 -0.5
525,816 + Xcc-8004.570.1 0.42 +0.5
525,816 + Xcc-8004.570.1 0.42 -1.4
525,816 + Xcc-8004.570.1 0.42 -0.3
525,816 + Xcc-8004.570.1 0.42 +0.7
525,816 + Xcc-8004.570.1 0.42 +1.6
525,816 + Xcc-8004.570.1 0.42 +2.4
525,816 + Xcc-8004.570.1 0.42 -1.1
525,816 + Xcc-8004.570.1 0.42 +1.7
525,816 + Xcc-8004.570.1 0.42 +0.4
525,816 + Xcc-8004.570.1 0.42 -2.5
525,817 - Xcc-8004.570.1 0.42 -2.8
525,817 - Xcc-8004.570.1 0.42 -0.6
525,817 - Xcc-8004.570.1 0.42 -1.7
525,837 + Xcc-8004.570.1 0.44 +2.6
525,837 + Xcc-8004.570.1 0.44 -0.4
525,837 + Xcc-8004.570.1 0.44 -2.1
525,837 + Xcc-8004.570.1 0.44 -2.4
525,837 + Xcc-8004.570.1 0.44 +0.2
525,837 + Xcc-8004.570.1 0.44 +2.8
525,837 + Xcc-8004.570.1 0.44 +0.2
525,837 + Xcc-8004.570.1 0.44 -0.9
525,837 + Xcc-8004.570.1 0.44 -0.5
525,837 + Xcc-8004.570.1 0.44 -1.9
525,838 - Xcc-8004.570.1 0.44 -0.9
525,838 - Xcc-8004.570.1 0.44 +1.6
525,838 - Xcc-8004.570.1 0.44 +1.0
525,838 - Xcc-8004.570.1 0.44 -3.6
525,838 - Xcc-8004.570.1 0.44 -2.1
525,838 - Xcc-8004.570.1 0.44 +2.6
525,838 - Xcc-8004.570.1 0.44 -1.7
525,838 - Xcc-8004.570.1 0.44 +0.4
525,838 - Xcc-8004.570.1 0.44 -2.9
525,838 - Xcc-8004.570.1 0.44 -3.4
525,838 - Xcc-8004.570.1 0.44 -1.4
525,838 - Xcc-8004.570.1 0.44 +1.2
525,838 - Xcc-8004.570.1 0.44 -2.2
525,838 - Xcc-8004.570.1 0.44 -0.4
525,882 + Xcc-8004.570.1 0.48 +1.0
525,882 + Xcc-8004.570.1 0.48 +0.9
525,882 + Xcc-8004.570.1 0.48 -1.7
525,883 - Xcc-8004.570.1 0.48 -0.1
525,883 - Xcc-8004.570.1 0.48 +1.5
525,883 - Xcc-8004.570.1 0.48 -0.9
525,883 - Xcc-8004.570.1 0.48 -0.2
526,084 - Xcc-8004.570.1 0.67 -0.6
526,084 - Xcc-8004.570.1 0.67 -2.6
526,253 + Xcc-8004.570.1 0.83 -1.5
526,253 + Xcc-8004.570.1 0.83 -0.1
526,253 + Xcc-8004.570.1 0.83 -2.0
526,253 + Xcc-8004.570.1 0.83 +0.6
526,253 + Xcc-8004.570.1 0.83 +1.0
526,253 + Xcc-8004.570.1 0.83 -1.9
526,254 - Xcc-8004.570.1 0.83 +1.9
526,254 - Xcc-8004.570.1 0.83 -1.8
526,254 - Xcc-8004.570.1 0.83 +0.3
526,254 - Xcc-8004.570.1 0.83 +1.1
526,254 - Xcc-8004.570.1 0.83 +2.8

Or see this region's nucleotide sequence