Experiment: Xylemvessel barcodes T0L1P3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.545.1 and Xcc-8004.551.1 are separated by 844 nucleotides Xcc-8004.551.1 and Xcc-8004.552.1 are separated by 302 nucleotides
Xcc-8004.545.1: Xcc-8004.545.1 - Nucleoside-diphosphate-sugar epimerases, at 506,698 to 507,330
Xcc-8004.545.1
Xcc-8004.551.1: Xcc-8004.551.1 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 508,175 to 508,933
Xcc-8004.551.1
Xcc-8004.552.1: Xcc-8004.552.1 - Hydroxyacylglutathione hydrolase (EC 3.1.2.6), at 509,236 to 510,672
Xcc-8004.552.1
Position (kb) 508
509 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 507.424 kb on + strand at 507.831 kb on - strand at 507.895 kb on - strand at 507.895 kb on - strand at 508.002 kb on + strand at 508.067 kb on - strand at 508.253 kb on + strand, within Xcc-8004.551.1 at 508.270 kb on + strand, within Xcc-8004.551.1 at 508.323 kb on + strand, within Xcc-8004.551.1 at 508.323 kb on + strand, within Xcc-8004.551.1 at 508.324 kb on - strand, within Xcc-8004.551.1 at 508.324 kb on - strand, within Xcc-8004.551.1 at 508.324 kb on - strand, within Xcc-8004.551.1 at 508.324 kb on - strand, within Xcc-8004.551.1 at 508.446 kb on + strand, within Xcc-8004.551.1 at 508.447 kb on - strand, within Xcc-8004.551.1 at 508.447 kb on - strand, within Xcc-8004.551.1 at 508.447 kb on - strand, within Xcc-8004.551.1 at 508.447 kb on - strand, within Xcc-8004.551.1 at 508.449 kb on + strand, within Xcc-8004.551.1 at 508.449 kb on + strand, within Xcc-8004.551.1 at 508.450 kb on - strand, within Xcc-8004.551.1 at 508.476 kb on + strand, within Xcc-8004.551.1 at 508.477 kb on - strand, within Xcc-8004.551.1 at 508.558 kb on - strand, within Xcc-8004.551.1 at 508.710 kb on + strand, within Xcc-8004.551.1 at 508.710 kb on + strand, within Xcc-8004.551.1 at 508.711 kb on - strand, within Xcc-8004.551.1 at 508.753 kb on + strand, within Xcc-8004.551.1 at 508.754 kb on - strand, within Xcc-8004.551.1 at 508.754 kb on - strand, within Xcc-8004.551.1 at 508.754 kb on - strand, within Xcc-8004.551.1 at 508.951 kb on + strand at 508.952 kb on - strand at 508.987 kb on + strand at 508.987 kb on + strand at 508.988 kb on - strand at 509.348 kb on + strand at 509.349 kb on - strand at 509.536 kb on + strand, within Xcc-8004.552.1 at 509.537 kb on - strand, within Xcc-8004.552.1 at 509.537 kb on - strand, within Xcc-8004.552.1 at 509.764 kb on + strand, within Xcc-8004.552.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3 remove 507,424 + -2.1 507,831 - -0.3 507,895 - -1.1 507,895 - -0.4 508,002 + -1.4 508,067 - +0.6 508,253 + Xcc-8004.551.1 0.10 -1.7 508,270 + Xcc-8004.551.1 0.13 +0.8 508,323 + Xcc-8004.551.1 0.19 -0.6 508,323 + Xcc-8004.551.1 0.19 -2.1 508,324 - Xcc-8004.551.1 0.20 +1.1 508,324 - Xcc-8004.551.1 0.20 -1.5 508,324 - Xcc-8004.551.1 0.20 +0.8 508,324 - Xcc-8004.551.1 0.20 +0.3 508,446 + Xcc-8004.551.1 0.36 -2.8 508,447 - Xcc-8004.551.1 0.36 +0.9 508,447 - Xcc-8004.551.1 0.36 +1.3 508,447 - Xcc-8004.551.1 0.36 -2.5 508,447 - Xcc-8004.551.1 0.36 -0.5 508,449 + Xcc-8004.551.1 0.36 +0.8 508,449 + Xcc-8004.551.1 0.36 -0.3 508,450 - Xcc-8004.551.1 0.36 -3.1 508,476 + Xcc-8004.551.1 0.40 +2.5 508,477 - Xcc-8004.551.1 0.40 -1.9 508,558 - Xcc-8004.551.1 0.50 -1.9 508,710 + Xcc-8004.551.1 0.70 -1.6 508,710 + Xcc-8004.551.1 0.70 -1.5 508,711 - Xcc-8004.551.1 0.71 +0.6 508,753 + Xcc-8004.551.1 0.76 -0.5 508,754 - Xcc-8004.551.1 0.76 -0.1 508,754 - Xcc-8004.551.1 0.76 +2.5 508,754 - Xcc-8004.551.1 0.76 +2.1 508,951 + -1.4 508,952 - +0.3 508,987 + -0.8 508,987 + -0.7 508,988 - +0.2 509,348 + -3.7 509,349 - +0.1 509,536 + Xcc-8004.552.1 0.21 -1.6 509,537 - Xcc-8004.552.1 0.21 -0.6 509,537 - Xcc-8004.552.1 0.21 +0.8 509,764 + Xcc-8004.552.1 0.37 -0.9
Or see this region's nucleotide sequence