Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5398.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5397.1 and Xcc-8004.5398.1 are separated by 124 nucleotidesXcc-8004.5398.1 and Xcc-8004.5399.1 are separated by 102 nucleotides Xcc-8004.5397.1: Xcc-8004.5397.1 - PROBABLE INTEGRAL MEMBRANE PROTEIN, at 5,131,794 to 5,132,849 Xcc-8004.5397.1 Xcc-8004.5398.1: Xcc-8004.5398.1 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 5,132,974 to 5,133,120 Xcc-8004.5398.1 Xcc-8004.5399.1: Xcc-8004.5399.1 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 5,133,223 to 5,134,401 Xcc-8004.5399.1 Position (kb) 5132 5133 5134Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5131.986 kb on + strand, within Xcc-8004.5397.1at 5131.986 kb on + strand, within Xcc-8004.5397.1at 5131.986 kb on + strand, within Xcc-8004.5397.1at 5131.987 kb on - strand, within Xcc-8004.5397.1at 5131.987 kb on - strand, within Xcc-8004.5397.1at 5132.021 kb on + strand, within Xcc-8004.5397.1at 5132.021 kb on + strand, within Xcc-8004.5397.1at 5132.021 kb on + strand, within Xcc-8004.5397.1at 5132.021 kb on + strand, within Xcc-8004.5397.1at 5132.021 kb on + strand, within Xcc-8004.5397.1at 5132.021 kb on + strand, within Xcc-8004.5397.1at 5132.021 kb on + strand, within Xcc-8004.5397.1at 5132.022 kb on - strand, within Xcc-8004.5397.1at 5132.022 kb on - strand, within Xcc-8004.5397.1at 5132.022 kb on - strand, within Xcc-8004.5397.1at 5132.022 kb on - strand, within Xcc-8004.5397.1at 5132.029 kb on + strand, within Xcc-8004.5397.1at 5132.029 kb on + strand, within Xcc-8004.5397.1at 5132.029 kb on + strand, within Xcc-8004.5397.1at 5132.030 kb on - strand, within Xcc-8004.5397.1at 5132.030 kb on - strand, within Xcc-8004.5397.1at 5132.030 kb on - strand, within Xcc-8004.5397.1at 5132.343 kb on + strand, within Xcc-8004.5397.1at 5132.344 kb on - strand, within Xcc-8004.5397.1at 5132.344 kb on - strand, within Xcc-8004.5397.1at 5132.344 kb on - strand, within Xcc-8004.5397.1at 5132.541 kb on + strand, within Xcc-8004.5397.1at 5132.541 kb on + strand, within Xcc-8004.5397.1at 5132.541 kb on + strand, within Xcc-8004.5397.1at 5132.541 kb on + strand, within Xcc-8004.5397.1at 5132.541 kb on + strand, within Xcc-8004.5397.1at 5132.541 kb on + strand, within Xcc-8004.5397.1at 5132.542 kb on - strand, within Xcc-8004.5397.1at 5132.542 kb on - strand, within Xcc-8004.5397.1at 5132.676 kb on + strand, within Xcc-8004.5397.1at 5132.676 kb on + strand, within Xcc-8004.5397.1at 5132.677 kb on - strand, within Xcc-8004.5397.1at 5132.847 kb on + strandat 5132.848 kb on - strandat 5132.848 kb on - strandat 5132.848 kb on - strandat 5132.848 kb on - strandat 5132.848 kb on - strandat 5132.848 kb on - strandat 5132.877 kb on + strandat 5132.878 kb on - strandat 5132.878 kb on - strandat 5132.878 kb on - strandat 5132.878 kb on - strandat 5132.878 kb on - strandat 5132.900 kb on + strandat 5132.900 kb on + strandat 5132.900 kb on + strandat 5132.900 kb on + strandat 5132.901 kb on - strandat 5132.901 kb on - strandat 5132.964 kb on + strandat 5132.975 kb on + strandat 5133.089 kb on + strand, within Xcc-8004.5398.1at 5133.089 kb on + strand, within Xcc-8004.5398.1at 5133.089 kb on + strand, within Xcc-8004.5398.1at 5133.090 kb on - strand, within Xcc-8004.5398.1at 5133.090 kb on - strand, within Xcc-8004.5398.1at 5133.090 kb on - strand, within Xcc-8004.5398.1at 5133.090 kb on - strand, within Xcc-8004.5398.1at 5133.090 kb on - strand, within Xcc-8004.5398.1at 5133.145 kb on - strandat 5133.145 kb on - strandat 5133.180 kb on + strandat 5133.210 kb on - strandat 5133.210 kb on - strandat 5133.210 kb on - strandat 5133.210 kb on - strandat 5133.214 kb on - strandat 5133.214 kb on - strandat 5133.214 kb on - strandat 5133.214 kb on - strandat 5133.214 kb on - strandat 5133.214 kb on - strandat 5133.214 kb on - strandat 5133.214 kb on - strandat 5133.214 kb on - strandat 5133.225 kb on - strandat 5133.301 kb on + strandat 5133.301 kb on + strandat 5133.301 kb on + strandat 5133.301 kb on + strandat 5133.302 kb on - strandat 5133.302 kb on - strandat 5133.340 kb on - strandat 5133.340 kb on - strandat 5133.387 kb on - strand, within Xcc-8004.5399.1at 5133.408 kb on - strand, within Xcc-8004.5399.1at 5133.408 kb on - strand, within Xcc-8004.5399.1at 5133.528 kb on - strand, within Xcc-8004.5399.1at 5133.572 kb on + strand, within Xcc-8004.5399.1at 5133.572 kb on + strand, within Xcc-8004.5399.1at 5133.572 kb on + strand, within Xcc-8004.5399.1at 5133.572 kb on + strand, within Xcc-8004.5399.1at 5133.572 kb on + strand, within Xcc-8004.5399.1at 5133.573 kb on - strand, within Xcc-8004.5399.1at 5133.573 kb on - strand, within Xcc-8004.5399.1at 5133.573 kb on - strand, within Xcc-8004.5399.1at 5133.680 kb on + strand, within Xcc-8004.5399.1at 5133.680 kb on + strand, within Xcc-8004.5399.1at 5133.732 kb on + strand, within Xcc-8004.5399.1at 5133.732 kb on + strand, within Xcc-8004.5399.1at 5133.733 kb on - strand, within Xcc-8004.5399.1at 5133.733 kb on - strand, within Xcc-8004.5399.1at 5133.734 kb on + strand, within Xcc-8004.5399.1at 5133.734 kb on + strand, within Xcc-8004.5399.1at 5133.735 kb on - strand, within Xcc-8004.5399.1at 5133.735 kb on - strand, within Xcc-8004.5399.1at 5133.735 kb on - strand, within Xcc-8004.5399.1at 5133.735 kb on - strand, within Xcc-8004.5399.1at 5133.797 kb on + strand, within Xcc-8004.5399.1at 5133.797 kb on + strand, within Xcc-8004.5399.1at 5133.797 kb on + strand, within Xcc-8004.5399.1at 5133.798 kb on - strand, within Xcc-8004.5399.1at 5133.798 kb on - strand, within Xcc-8004.5399.1at 5134.100 kb on - strand, within Xcc-8004.5399.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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5,131,986 + Xcc-8004.5397.1 0.18 -3.0
5,131,986 + Xcc-8004.5397.1 0.18 +0.2
5,131,986 + Xcc-8004.5397.1 0.18 -1.7
5,131,987 - Xcc-8004.5397.1 0.18 +4.4
5,131,987 - Xcc-8004.5397.1 0.18 -2.7
5,132,021 + Xcc-8004.5397.1 0.21 +1.6
5,132,021 + Xcc-8004.5397.1 0.21 +1.4
5,132,021 + Xcc-8004.5397.1 0.21 +2.0
5,132,021 + Xcc-8004.5397.1 0.21 +0.3
5,132,021 + Xcc-8004.5397.1 0.21 +1.8
5,132,021 + Xcc-8004.5397.1 0.21 -0.5
5,132,021 + Xcc-8004.5397.1 0.21 +0.1
5,132,022 - Xcc-8004.5397.1 0.22 +1.9
5,132,022 - Xcc-8004.5397.1 0.22 -2.0
5,132,022 - Xcc-8004.5397.1 0.22 +0.1
5,132,022 - Xcc-8004.5397.1 0.22 -1.8
5,132,029 + Xcc-8004.5397.1 0.22 -0.1
5,132,029 + Xcc-8004.5397.1 0.22 +1.1
5,132,029 + Xcc-8004.5397.1 0.22 +0.9
5,132,030 - Xcc-8004.5397.1 0.22 -0.9
5,132,030 - Xcc-8004.5397.1 0.22 -1.5
5,132,030 - Xcc-8004.5397.1 0.22 -1.0
5,132,343 + Xcc-8004.5397.1 0.52 -1.3
5,132,344 - Xcc-8004.5397.1 0.52 -0.3
5,132,344 - Xcc-8004.5397.1 0.52 -2.7
5,132,344 - Xcc-8004.5397.1 0.52 +1.6
5,132,541 + Xcc-8004.5397.1 0.71 -1.7
5,132,541 + Xcc-8004.5397.1 0.71 +2.9
5,132,541 + Xcc-8004.5397.1 0.71 +1.6
5,132,541 + Xcc-8004.5397.1 0.71 +0.8
5,132,541 + Xcc-8004.5397.1 0.71 +1.1
5,132,541 + Xcc-8004.5397.1 0.71 -1.3
5,132,542 - Xcc-8004.5397.1 0.71 +0.8
5,132,542 - Xcc-8004.5397.1 0.71 +0.9
5,132,676 + Xcc-8004.5397.1 0.84 +2.2
5,132,676 + Xcc-8004.5397.1 0.84 +1.7
5,132,677 - Xcc-8004.5397.1 0.84 +3.4
5,132,847 + +1.7
5,132,848 - -0.4
5,132,848 - -0.9
5,132,848 - +0.0
5,132,848 - +1.0
5,132,848 - -1.2
5,132,848 - -1.1
5,132,877 + -2.1
5,132,878 - -2.2
5,132,878 - -2.0
5,132,878 - +0.7
5,132,878 - +0.3
5,132,878 - -1.7
5,132,900 + -3.3
5,132,900 + -2.3
5,132,900 + +3.2
5,132,900 + +2.2
5,132,901 - +4.1
5,132,901 - +0.7
5,132,964 + +1.7
5,132,975 + +2.2
5,133,089 + Xcc-8004.5398.1 0.78 -2.9
5,133,089 + Xcc-8004.5398.1 0.78 +1.7
5,133,089 + Xcc-8004.5398.1 0.78 -3.1
5,133,090 - Xcc-8004.5398.1 0.79 -1.9
5,133,090 - Xcc-8004.5398.1 0.79 -3.0
5,133,090 - Xcc-8004.5398.1 0.79 -0.2
5,133,090 - Xcc-8004.5398.1 0.79 -2.1
5,133,090 - Xcc-8004.5398.1 0.79 -2.5
5,133,145 - +2.3
5,133,145 - +1.8
5,133,180 + +1.3
5,133,210 - -1.5
5,133,210 - -0.3
5,133,210 - -0.1
5,133,210 - +1.4
5,133,214 - +1.4
5,133,214 - +2.8
5,133,214 - +2.3
5,133,214 - -1.6
5,133,214 - +0.5
5,133,214 - -0.8
5,133,214 - +0.7
5,133,214 - -2.2
5,133,214 - +1.6
5,133,225 - -0.0
5,133,301 + -2.2
5,133,301 + -1.9
5,133,301 + +2.2
5,133,301 + -0.9
5,133,302 - -1.1
5,133,302 - +2.2
5,133,340 - -1.8
5,133,340 - +1.1
5,133,387 - Xcc-8004.5399.1 0.14 +1.9
5,133,408 - Xcc-8004.5399.1 0.16 -2.1
5,133,408 - Xcc-8004.5399.1 0.16 -0.5
5,133,528 - Xcc-8004.5399.1 0.26 +0.7
5,133,572 + Xcc-8004.5399.1 0.30 -1.7
5,133,572 + Xcc-8004.5399.1 0.30 +1.8
5,133,572 + Xcc-8004.5399.1 0.30 -0.6
5,133,572 + Xcc-8004.5399.1 0.30 -0.1
5,133,572 + Xcc-8004.5399.1 0.30 +0.5
5,133,573 - Xcc-8004.5399.1 0.30 -0.2
5,133,573 - Xcc-8004.5399.1 0.30 -1.6
5,133,573 - Xcc-8004.5399.1 0.30 -1.3
5,133,680 + Xcc-8004.5399.1 0.39 -0.8
5,133,680 + Xcc-8004.5399.1 0.39 +0.1
5,133,732 + Xcc-8004.5399.1 0.43 -1.0
5,133,732 + Xcc-8004.5399.1 0.43 +1.9
5,133,733 - Xcc-8004.5399.1 0.43 -2.0
5,133,733 - Xcc-8004.5399.1 0.43 -0.3
5,133,734 + Xcc-8004.5399.1 0.43 -1.1
5,133,734 + Xcc-8004.5399.1 0.43 +0.4
5,133,735 - Xcc-8004.5399.1 0.43 +1.5
5,133,735 - Xcc-8004.5399.1 0.43 +1.4
5,133,735 - Xcc-8004.5399.1 0.43 -3.4
5,133,735 - Xcc-8004.5399.1 0.43 -0.6
5,133,797 + Xcc-8004.5399.1 0.49 -2.8
5,133,797 + Xcc-8004.5399.1 0.49 -0.8
5,133,797 + Xcc-8004.5399.1 0.49 +1.1
5,133,798 - Xcc-8004.5399.1 0.49 +1.6
5,133,798 - Xcc-8004.5399.1 0.49 -1.3
5,134,100 - Xcc-8004.5399.1 0.74 -0.3

Or see this region's nucleotide sequence