Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5161.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5159.1 and Xcc-8004.5160.1 are separated by 379 nucleotidesXcc-8004.5160.1 and Xcc-8004.5161.1 are separated by 4 nucleotidesXcc-8004.5161.1 and Xcc-8004.5162.1 are separated by 264 nucleotides Xcc-8004.5159.1: Xcc-8004.5159.1 - FIG01212614: hypothetical protein, at 4,894,147 to 4,895,055 Xcc-8004.5159.1 Xcc-8004.5160.1: Xcc-8004.5160.1 - cytochrome C biogenesis protein, at 4,895,435 to 4,896,025 Xcc-8004.5160.1 Xcc-8004.5161.1: Xcc-8004.5161.1 - FIG01212148: hypothetical protein, at 4,896,030 to 4,896,233 Xcc-8004.5161.1 Xcc-8004.5162.1: Xcc-8004.5162.1 - Beta-xylosidase (EC 3.2.1.37), at 4,896,498 to 4,898,132 Xcc-8004.5162.1 Position (kb) 4896 4897Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4895.049 kb on + strandat 4895.049 kb on + strandat 4895.049 kb on + strandat 4895.049 kb on + strandat 4895.049 kb on + strandat 4895.049 kb on + strandat 4895.049 kb on + strandat 4895.049 kb on + strandat 4895.050 kb on - strandat 4895.050 kb on - strandat 4895.050 kb on - strandat 4895.050 kb on - strandat 4895.050 kb on - strandat 4895.050 kb on - strandat 4895.050 kb on - strandat 4895.050 kb on - strandat 4895.050 kb on - strandat 4895.050 kb on - strandat 4895.050 kb on - strandat 4895.050 kb on - strandat 4895.050 kb on - strandat 4895.068 kb on - strandat 4895.098 kb on - strandat 4895.098 kb on - strandat 4895.098 kb on - strandat 4895.098 kb on - strandat 4895.098 kb on - strandat 4895.275 kb on + strandat 4895.282 kb on + strandat 4895.282 kb on + strandat 4895.282 kb on + strandat 4895.282 kb on + strandat 4895.457 kb on + strandat 4895.564 kb on + strand, within Xcc-8004.5160.1at 4895.576 kb on + strand, within Xcc-8004.5160.1at 4895.576 kb on + strand, within Xcc-8004.5160.1at 4895.576 kb on + strand, within Xcc-8004.5160.1at 4895.576 kb on + strand, within Xcc-8004.5160.1at 4895.576 kb on + strand, within Xcc-8004.5160.1at 4895.576 kb on + strand, within Xcc-8004.5160.1at 4895.576 kb on + strand, within Xcc-8004.5160.1at 4895.576 kb on + strand, within Xcc-8004.5160.1at 4895.576 kb on + strand, within Xcc-8004.5160.1at 4895.576 kb on + strand, within Xcc-8004.5160.1at 4895.576 kb on + strand, within Xcc-8004.5160.1at 4895.576 kb on + strand, within Xcc-8004.5160.1at 4895.577 kb on - strand, within Xcc-8004.5160.1at 4895.577 kb on - strand, within Xcc-8004.5160.1at 4895.577 kb on - strand, within Xcc-8004.5160.1at 4895.577 kb on - strand, within Xcc-8004.5160.1at 4895.577 kb on - strand, within Xcc-8004.5160.1at 4895.577 kb on - strand, within Xcc-8004.5160.1at 4895.577 kb on - strand, within Xcc-8004.5160.1at 4895.577 kb on - strand, within Xcc-8004.5160.1at 4895.577 kb on - strand, within Xcc-8004.5160.1at 4895.577 kb on - strand, within Xcc-8004.5160.1at 4895.577 kb on - strand, within Xcc-8004.5160.1at 4895.577 kb on - strand, within Xcc-8004.5160.1at 4895.577 kb on - strand, within Xcc-8004.5160.1at 4895.577 kb on - strand, within Xcc-8004.5160.1at 4895.577 kb on - strand, within Xcc-8004.5160.1at 4895.577 kb on - strand, within Xcc-8004.5160.1at 4895.618 kb on + strand, within Xcc-8004.5160.1at 4895.618 kb on + strand, within Xcc-8004.5160.1at 4895.618 kb on + strand, within Xcc-8004.5160.1at 4895.618 kb on + strand, within Xcc-8004.5160.1at 4895.619 kb on - strand, within Xcc-8004.5160.1at 4895.619 kb on - strand, within Xcc-8004.5160.1at 4895.619 kb on - strand, within Xcc-8004.5160.1at 4895.620 kb on + strand, within Xcc-8004.5160.1at 4895.620 kb on + strand, within Xcc-8004.5160.1at 4895.620 kb on + strand, within Xcc-8004.5160.1at 4895.620 kb on + strand, within Xcc-8004.5160.1at 4895.620 kb on + strand, within Xcc-8004.5160.1at 4895.620 kb on + strand, within Xcc-8004.5160.1at 4895.620 kb on + strand, within Xcc-8004.5160.1at 4895.620 kb on + strand, within Xcc-8004.5160.1at 4895.620 kb on + strand, within Xcc-8004.5160.1at 4895.620 kb on + strand, within Xcc-8004.5160.1at 4895.620 kb on + strand, within Xcc-8004.5160.1at 4895.620 kb on + strand, within Xcc-8004.5160.1at 4895.620 kb on + strand, within Xcc-8004.5160.1at 4895.620 kb on + strand, within Xcc-8004.5160.1at 4895.621 kb on - strand, within Xcc-8004.5160.1at 4895.621 kb on - strand, within Xcc-8004.5160.1at 4895.621 kb on - strand, within Xcc-8004.5160.1at 4895.621 kb on - strand, within Xcc-8004.5160.1at 4895.621 kb on - strand, within Xcc-8004.5160.1at 4895.621 kb on - strand, within Xcc-8004.5160.1at 4895.621 kb on - strand, within Xcc-8004.5160.1at 4895.621 kb on - strand, within Xcc-8004.5160.1at 4895.665 kb on + strand, within Xcc-8004.5160.1at 4895.666 kb on - strand, within Xcc-8004.5160.1at 4895.666 kb on - strand, within Xcc-8004.5160.1at 4895.682 kb on - strand, within Xcc-8004.5160.1at 4895.798 kb on + strand, within Xcc-8004.5160.1at 4896.046 kb on + strandat 4896.047 kb on - strandat 4896.047 kb on - strandat 4896.052 kb on + strand, within Xcc-8004.5161.1at 4896.052 kb on + strand, within Xcc-8004.5161.1at 4896.052 kb on + strand, within Xcc-8004.5161.1at 4896.053 kb on - strand, within Xcc-8004.5161.1at 4896.053 kb on - strand, within Xcc-8004.5161.1at 4896.219 kb on + strandat 4896.219 kb on + strandat 4896.219 kb on + strandat 4896.219 kb on + strandat 4896.219 kb on + strandat 4896.220 kb on - strandat 4896.220 kb on - strandat 4896.220 kb on - strandat 4896.231 kb on + strandat 4896.329 kb on + strandat 4896.329 kb on + strandat 4896.329 kb on + strandat 4896.330 kb on - strandat 4896.374 kb on + strandat 4896.374 kb on + strandat 4896.375 kb on - strandat 4896.375 kb on - strandat 4896.375 kb on - strandat 4896.375 kb on - strandat 4896.375 kb on - strandat 4896.401 kb on + strandat 4896.401 kb on + strandat 4896.556 kb on + strandat 4896.556 kb on + strandat 4896.557 kb on - strandat 4896.557 kb on - strandat 4896.557 kb on - strandat 4896.557 kb on - strandat 4896.664 kb on + strand, within Xcc-8004.5162.1at 4896.664 kb on + strand, within Xcc-8004.5162.1at 4896.665 kb on - strand, within Xcc-8004.5162.1at 4896.665 kb on - strand, within Xcc-8004.5162.1at 4896.670 kb on + strand, within Xcc-8004.5162.1at 4896.670 kb on + strand, within Xcc-8004.5162.1at 4896.670 kb on + strand, within Xcc-8004.5162.1at 4896.670 kb on + strand, within Xcc-8004.5162.1at 4896.671 kb on - strand, within Xcc-8004.5162.1at 4896.671 kb on - strand, within Xcc-8004.5162.1at 4896.671 kb on - strand, within Xcc-8004.5162.1at 4896.671 kb on - strand, within Xcc-8004.5162.1at 4896.671 kb on - strand, within Xcc-8004.5162.1at 4896.671 kb on - strand, within Xcc-8004.5162.1at 4896.671 kb on - strand, within Xcc-8004.5162.1at 4896.678 kb on + strand, within Xcc-8004.5162.1at 4896.757 kb on + strand, within Xcc-8004.5162.1at 4896.763 kb on + strand, within Xcc-8004.5162.1at 4896.763 kb on + strand, within Xcc-8004.5162.1at 4896.763 kb on + strand, within Xcc-8004.5162.1at 4896.763 kb on + strand, within Xcc-8004.5162.1at 4896.764 kb on - strand, within Xcc-8004.5162.1at 4896.764 kb on - strand, within Xcc-8004.5162.1at 4896.764 kb on - strand, within Xcc-8004.5162.1at 4896.764 kb on - strand, within Xcc-8004.5162.1at 4896.817 kb on + strand, within Xcc-8004.5162.1at 4896.817 kb on + strand, within Xcc-8004.5162.1at 4896.818 kb on - strand, within Xcc-8004.5162.1at 4896.818 kb on - strand, within Xcc-8004.5162.1at 4896.818 kb on - strand, within Xcc-8004.5162.1at 4896.818 kb on - strand, within Xcc-8004.5162.1at 4896.878 kb on - strand, within Xcc-8004.5162.1at 4897.067 kb on + strand, within Xcc-8004.5162.1at 4897.067 kb on + strand, within Xcc-8004.5162.1at 4897.067 kb on + strand, within Xcc-8004.5162.1at 4897.068 kb on - strand, within Xcc-8004.5162.1at 4897.068 kb on - strand, within Xcc-8004.5162.1at 4897.219 kb on + strand, within Xcc-8004.5162.1at 4897.220 kb on - strand, within Xcc-8004.5162.1at 4897.220 kb on - strand, within Xcc-8004.5162.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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4,895,049 + -1.4
4,895,049 + -0.0
4,895,049 + +0.9
4,895,049 + +1.1
4,895,049 + -1.7
4,895,049 + -1.5
4,895,049 + +0.9
4,895,049 + -1.2
4,895,050 - -0.5
4,895,050 - -0.4
4,895,050 - -0.9
4,895,050 - +2.2
4,895,050 - +0.4
4,895,050 - -2.6
4,895,050 - +0.9
4,895,050 - -0.9
4,895,050 - -1.7
4,895,050 - +1.2
4,895,050 - -3.1
4,895,050 - -1.5
4,895,050 - +0.6
4,895,068 - +2.3
4,895,098 - -1.4
4,895,098 - -1.2
4,895,098 - -2.0
4,895,098 - -1.2
4,895,098 - -0.5
4,895,275 + +1.7
4,895,282 + +0.6
4,895,282 + -0.4
4,895,282 + -0.1
4,895,282 + +0.9
4,895,457 + +1.2
4,895,564 + Xcc-8004.5160.1 0.22 -0.1
4,895,576 + Xcc-8004.5160.1 0.24 -2.9
4,895,576 + Xcc-8004.5160.1 0.24 -1.7
4,895,576 + Xcc-8004.5160.1 0.24 -0.2
4,895,576 + Xcc-8004.5160.1 0.24 +1.3
4,895,576 + Xcc-8004.5160.1 0.24 -2.2
4,895,576 + Xcc-8004.5160.1 0.24 +1.7
4,895,576 + Xcc-8004.5160.1 0.24 -0.5
4,895,576 + Xcc-8004.5160.1 0.24 +0.5
4,895,576 + Xcc-8004.5160.1 0.24 -2.0
4,895,576 + Xcc-8004.5160.1 0.24 +2.4
4,895,576 + Xcc-8004.5160.1 0.24 +0.8
4,895,576 + Xcc-8004.5160.1 0.24 +1.1
4,895,577 - Xcc-8004.5160.1 0.24 -1.2
4,895,577 - Xcc-8004.5160.1 0.24 -2.2
4,895,577 - Xcc-8004.5160.1 0.24 +0.3
4,895,577 - Xcc-8004.5160.1 0.24 -2.9
4,895,577 - Xcc-8004.5160.1 0.24 +2.1
4,895,577 - Xcc-8004.5160.1 0.24 -1.2
4,895,577 - Xcc-8004.5160.1 0.24 +1.6
4,895,577 - Xcc-8004.5160.1 0.24 +2.1
4,895,577 - Xcc-8004.5160.1 0.24 +1.5
4,895,577 - Xcc-8004.5160.1 0.24 +1.8
4,895,577 - Xcc-8004.5160.1 0.24 +1.7
4,895,577 - Xcc-8004.5160.1 0.24 +2.0
4,895,577 - Xcc-8004.5160.1 0.24 +1.7
4,895,577 - Xcc-8004.5160.1 0.24 -2.4
4,895,577 - Xcc-8004.5160.1 0.24 +2.8
4,895,577 - Xcc-8004.5160.1 0.24 +1.0
4,895,618 + Xcc-8004.5160.1 0.31 +0.3
4,895,618 + Xcc-8004.5160.1 0.31 -0.5
4,895,618 + Xcc-8004.5160.1 0.31 -2.2
4,895,618 + Xcc-8004.5160.1 0.31 -1.9
4,895,619 - Xcc-8004.5160.1 0.31 -1.5
4,895,619 - Xcc-8004.5160.1 0.31 +2.3
4,895,619 - Xcc-8004.5160.1 0.31 -1.6
4,895,620 + Xcc-8004.5160.1 0.31 -1.2
4,895,620 + Xcc-8004.5160.1 0.31 -2.9
4,895,620 + Xcc-8004.5160.1 0.31 -1.8
4,895,620 + Xcc-8004.5160.1 0.31 -1.4
4,895,620 + Xcc-8004.5160.1 0.31 +2.4
4,895,620 + Xcc-8004.5160.1 0.31 +1.9
4,895,620 + Xcc-8004.5160.1 0.31 -1.7
4,895,620 + Xcc-8004.5160.1 0.31 -0.8
4,895,620 + Xcc-8004.5160.1 0.31 +1.3
4,895,620 + Xcc-8004.5160.1 0.31 +0.7
4,895,620 + Xcc-8004.5160.1 0.31 +1.5
4,895,620 + Xcc-8004.5160.1 0.31 +1.8
4,895,620 + Xcc-8004.5160.1 0.31 +2.4
4,895,620 + Xcc-8004.5160.1 0.31 -0.7
4,895,621 - Xcc-8004.5160.1 0.31 -1.9
4,895,621 - Xcc-8004.5160.1 0.31 +3.2
4,895,621 - Xcc-8004.5160.1 0.31 -0.1
4,895,621 - Xcc-8004.5160.1 0.31 +0.9
4,895,621 - Xcc-8004.5160.1 0.31 +0.8
4,895,621 - Xcc-8004.5160.1 0.31 +1.3
4,895,621 - Xcc-8004.5160.1 0.31 -0.4
4,895,621 - Xcc-8004.5160.1 0.31 -1.8
4,895,665 + Xcc-8004.5160.1 0.39 -2.6
4,895,666 - Xcc-8004.5160.1 0.39 +2.3
4,895,666 - Xcc-8004.5160.1 0.39 -2.5
4,895,682 - Xcc-8004.5160.1 0.42 +2.3
4,895,798 + Xcc-8004.5160.1 0.61 -0.1
4,896,046 + +2.0
4,896,047 - +0.9
4,896,047 - +1.4
4,896,052 + Xcc-8004.5161.1 0.11 -3.4
4,896,052 + Xcc-8004.5161.1 0.11 -1.6
4,896,052 + Xcc-8004.5161.1 0.11 -1.8
4,896,053 - Xcc-8004.5161.1 0.11 -0.7
4,896,053 - Xcc-8004.5161.1 0.11 -2.5
4,896,219 + +1.0
4,896,219 + -2.9
4,896,219 + -0.3
4,896,219 + +0.4
4,896,219 + -0.7
4,896,220 - -0.4
4,896,220 - +0.1
4,896,220 - +0.1
4,896,231 + -2.0
4,896,329 + -0.7
4,896,329 + +0.2
4,896,329 + -3.1
4,896,330 - -1.4
4,896,374 + +1.1
4,896,374 + -0.4
4,896,375 - +1.6
4,896,375 - +0.6
4,896,375 - +0.6
4,896,375 - +2.5
4,896,375 - -1.0
4,896,401 + -0.1
4,896,401 + +1.2
4,896,556 + -0.8
4,896,556 + +0.1
4,896,557 - -0.9
4,896,557 - -0.4
4,896,557 - -2.0
4,896,557 - -0.6
4,896,664 + Xcc-8004.5162.1 0.10 -0.6
4,896,664 + Xcc-8004.5162.1 0.10 +1.1
4,896,665 - Xcc-8004.5162.1 0.10 +1.9
4,896,665 - Xcc-8004.5162.1 0.10 -0.3
4,896,670 + Xcc-8004.5162.1 0.11 -0.5
4,896,670 + Xcc-8004.5162.1 0.11 -0.9
4,896,670 + Xcc-8004.5162.1 0.11 +1.6
4,896,670 + Xcc-8004.5162.1 0.11 +0.1
4,896,671 - Xcc-8004.5162.1 0.11 +1.0
4,896,671 - Xcc-8004.5162.1 0.11 -1.2
4,896,671 - Xcc-8004.5162.1 0.11 -1.6
4,896,671 - Xcc-8004.5162.1 0.11 -0.5
4,896,671 - Xcc-8004.5162.1 0.11 -0.2
4,896,671 - Xcc-8004.5162.1 0.11 -2.0
4,896,671 - Xcc-8004.5162.1 0.11 +1.5
4,896,678 + Xcc-8004.5162.1 0.11 -3.1
4,896,757 + Xcc-8004.5162.1 0.16 +3.4
4,896,763 + Xcc-8004.5162.1 0.16 +1.2
4,896,763 + Xcc-8004.5162.1 0.16 -3.4
4,896,763 + Xcc-8004.5162.1 0.16 -0.8
4,896,763 + Xcc-8004.5162.1 0.16 +3.0
4,896,764 - Xcc-8004.5162.1 0.16 -1.1
4,896,764 - Xcc-8004.5162.1 0.16 +1.2
4,896,764 - Xcc-8004.5162.1 0.16 -1.7
4,896,764 - Xcc-8004.5162.1 0.16 +1.2
4,896,817 + Xcc-8004.5162.1 0.20 +0.7
4,896,817 + Xcc-8004.5162.1 0.20 -1.7
4,896,818 - Xcc-8004.5162.1 0.20 +1.4
4,896,818 - Xcc-8004.5162.1 0.20 +0.6
4,896,818 - Xcc-8004.5162.1 0.20 -1.7
4,896,818 - Xcc-8004.5162.1 0.20 +3.1
4,896,878 - Xcc-8004.5162.1 0.23 -0.6
4,897,067 + Xcc-8004.5162.1 0.35 +1.4
4,897,067 + Xcc-8004.5162.1 0.35 +0.7
4,897,067 + Xcc-8004.5162.1 0.35 +1.6
4,897,068 - Xcc-8004.5162.1 0.35 +1.0
4,897,068 - Xcc-8004.5162.1 0.35 -0.7
4,897,219 + Xcc-8004.5162.1 0.44 -2.3
4,897,220 - Xcc-8004.5162.1 0.44 +0.4
4,897,220 - Xcc-8004.5162.1 0.44 -1.7

Or see this region's nucleotide sequence