Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5130.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5129.1 and Xcc-8004.5130.1 overlap by 11 nucleotidesXcc-8004.5130.1 and Xcc-8004.5131.1 overlap by 11 nucleotides Xcc-8004.5129.1: Xcc-8004.5129.1 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 4,859,254 to 4,862,466 Xcc-8004.5129.1 Xcc-8004.5130.1: Xcc-8004.5130.1 - hypothetical protein, at 4,862,456 to 4,863,091 Xcc-8004.5130.1 Xcc-8004.5131.1: Xcc-8004.5131.1 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 4,863,081 to 4,864,562 Xcc-8004.5131.1 Position (kb) 4862 4863 4864Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4861.478 kb on + strand, within Xcc-8004.5129.1at 4861.478 kb on + strand, within Xcc-8004.5129.1at 4861.478 kb on + strand, within Xcc-8004.5129.1at 4861.479 kb on - strand, within Xcc-8004.5129.1at 4861.882 kb on - strand, within Xcc-8004.5129.1at 4862.042 kb on + strand, within Xcc-8004.5129.1at 4862.043 kb on - strand, within Xcc-8004.5129.1at 4862.043 kb on - strand, within Xcc-8004.5129.1at 4862.156 kb on + strandat 4862.156 kb on + strandat 4862.157 kb on - strandat 4862.204 kb on + strandat 4862.457 kb on + strandat 4862.458 kb on - strandat 4862.458 kb on - strandat 4862.458 kb on - strandat 4862.458 kb on - strandat 4862.494 kb on + strandat 4862.494 kb on + strandat 4862.494 kb on + strandat 4862.495 kb on - strandat 4862.495 kb on - strandat 4862.495 kb on - strandat 4862.495 kb on - strandat 4862.495 kb on - strandat 4862.571 kb on + strand, within Xcc-8004.5130.1at 4862.626 kb on + strand, within Xcc-8004.5130.1at 4862.626 kb on + strand, within Xcc-8004.5130.1at 4862.627 kb on - strand, within Xcc-8004.5130.1at 4862.627 kb on - strand, within Xcc-8004.5130.1at 4862.627 kb on - strand, within Xcc-8004.5130.1at 4862.627 kb on - strand, within Xcc-8004.5130.1at 4863.130 kb on + strandat 4863.131 kb on - strandat 4863.229 kb on + strandat 4863.230 kb on - strand, within Xcc-8004.5131.1at 4863.652 kb on + strand, within Xcc-8004.5131.1at 4863.652 kb on + strand, within Xcc-8004.5131.1at 4863.653 kb on - strand, within Xcc-8004.5131.1at 4863.691 kb on - strand, within Xcc-8004.5131.1at 4863.691 kb on - strand, within Xcc-8004.5131.1at 4863.691 kb on - strand, within Xcc-8004.5131.1at 4863.691 kb on - strand, within Xcc-8004.5131.1at 4863.804 kb on + strand, within Xcc-8004.5131.1at 4863.804 kb on + strand, within Xcc-8004.5131.1at 4863.804 kb on + strand, within Xcc-8004.5131.1at 4863.805 kb on - strand, within Xcc-8004.5131.1at 4863.805 kb on - strand, within Xcc-8004.5131.1at 4863.902 kb on - strand, within Xcc-8004.5131.1at 4863.910 kb on + strand, within Xcc-8004.5131.1at 4863.911 kb on - strand, within Xcc-8004.5131.1at 4863.911 kb on - strand, within Xcc-8004.5131.1at 4863.911 kb on - strand, within Xcc-8004.5131.1at 4863.911 kb on - strand, within Xcc-8004.5131.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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4,861,478 + Xcc-8004.5129.1 0.69 +0.2
4,861,478 + Xcc-8004.5129.1 0.69 +1.6
4,861,478 + Xcc-8004.5129.1 0.69 +0.7
4,861,479 - Xcc-8004.5129.1 0.69 +0.7
4,861,882 - Xcc-8004.5129.1 0.82 +2.6
4,862,042 + Xcc-8004.5129.1 0.87 +0.1
4,862,043 - Xcc-8004.5129.1 0.87 -0.8
4,862,043 - Xcc-8004.5129.1 0.87 +1.7
4,862,156 + -0.7
4,862,156 + -2.9
4,862,157 - +0.8
4,862,204 + -0.2
4,862,457 + -0.8
4,862,458 - -0.3
4,862,458 - -0.5
4,862,458 - +0.3
4,862,458 - -0.9
4,862,494 + -0.0
4,862,494 + -0.6
4,862,494 + -1.3
4,862,495 - -0.1
4,862,495 - -1.3
4,862,495 - +1.8
4,862,495 - +0.4
4,862,495 - -2.2
4,862,571 + Xcc-8004.5130.1 0.18 -0.9
4,862,626 + Xcc-8004.5130.1 0.27 +0.9
4,862,626 + Xcc-8004.5130.1 0.27 -1.5
4,862,627 - Xcc-8004.5130.1 0.27 -1.5
4,862,627 - Xcc-8004.5130.1 0.27 -0.6
4,862,627 - Xcc-8004.5130.1 0.27 +0.7
4,862,627 - Xcc-8004.5130.1 0.27 -1.1
4,863,130 + -0.8
4,863,131 - -0.3
4,863,229 + +0.7
4,863,230 - Xcc-8004.5131.1 0.10 -0.1
4,863,652 + Xcc-8004.5131.1 0.39 -1.8
4,863,652 + Xcc-8004.5131.1 0.39 -2.8
4,863,653 - Xcc-8004.5131.1 0.39 -2.0
4,863,691 - Xcc-8004.5131.1 0.41 -1.3
4,863,691 - Xcc-8004.5131.1 0.41 -1.7
4,863,691 - Xcc-8004.5131.1 0.41 -2.7
4,863,691 - Xcc-8004.5131.1 0.41 -1.7
4,863,804 + Xcc-8004.5131.1 0.49 +1.3
4,863,804 + Xcc-8004.5131.1 0.49 +0.5
4,863,804 + Xcc-8004.5131.1 0.49 +0.6
4,863,805 - Xcc-8004.5131.1 0.49 -0.2
4,863,805 - Xcc-8004.5131.1 0.49 -2.5
4,863,902 - Xcc-8004.5131.1 0.55 +1.1
4,863,910 + Xcc-8004.5131.1 0.56 -0.6
4,863,911 - Xcc-8004.5131.1 0.56 +1.9
4,863,911 - Xcc-8004.5131.1 0.56 +0.1
4,863,911 - Xcc-8004.5131.1 0.56 +0.7
4,863,911 - Xcc-8004.5131.1 0.56 -1.6

Or see this region's nucleotide sequence