Experiment: Xylemvessel barcodes T0L1P3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5095.1 and Xcc-8004.5096.1 are separated by 59 nucleotides Xcc-8004.5096.1 and Xcc-8004.5097.1 are separated by 535 nucleotides
Xcc-8004.5095.1: Xcc-8004.5095.1 - uncharacterized domain / RidA/YER057c/UK114 superfamily, group 5, at 4,831,032 to 4,832,039
Xcc-8004.5095.1
Xcc-8004.5096.1: Xcc-8004.5096.1 - FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase, at 4,832,099 to 4,833,457
Xcc-8004.5096.1
Xcc-8004.5097.1: Xcc-8004.5097.1 - Dipeptidyl peptidase IV, at 4,833,993 to 4,836,365
Xcc-8004.5097.1
Position (kb) 4832
4833
4834 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4831.191 kb on + strand, within Xcc-8004.5095.1 at 4831.191 kb on + strand, within Xcc-8004.5095.1 at 4831.191 kb on + strand, within Xcc-8004.5095.1 at 4831.191 kb on + strand, within Xcc-8004.5095.1 at 4831.192 kb on - strand, within Xcc-8004.5095.1 at 4831.192 kb on - strand, within Xcc-8004.5095.1 at 4831.192 kb on - strand, within Xcc-8004.5095.1 at 4831.192 kb on - strand, within Xcc-8004.5095.1 at 4831.216 kb on - strand, within Xcc-8004.5095.1 at 4831.371 kb on + strand, within Xcc-8004.5095.1 at 4831.371 kb on + strand, within Xcc-8004.5095.1 at 4831.372 kb on - strand, within Xcc-8004.5095.1 at 4831.434 kb on + strand, within Xcc-8004.5095.1 at 4831.434 kb on + strand, within Xcc-8004.5095.1 at 4831.434 kb on + strand, within Xcc-8004.5095.1 at 4831.435 kb on - strand, within Xcc-8004.5095.1 at 4831.435 kb on - strand, within Xcc-8004.5095.1 at 4831.435 kb on - strand, within Xcc-8004.5095.1 at 4831.587 kb on + strand, within Xcc-8004.5095.1 at 4831.587 kb on + strand, within Xcc-8004.5095.1 at 4831.587 kb on + strand, within Xcc-8004.5095.1 at 4831.587 kb on + strand, within Xcc-8004.5095.1 at 4831.587 kb on + strand, within Xcc-8004.5095.1 at 4831.588 kb on - strand, within Xcc-8004.5095.1 at 4831.647 kb on + strand, within Xcc-8004.5095.1 at 4831.647 kb on + strand, within Xcc-8004.5095.1 at 4831.647 kb on + strand, within Xcc-8004.5095.1 at 4831.647 kb on + strand, within Xcc-8004.5095.1 at 4831.647 kb on + strand, within Xcc-8004.5095.1 at 4831.647 kb on + strand, within Xcc-8004.5095.1 at 4831.647 kb on + strand, within Xcc-8004.5095.1 at 4831.647 kb on + strand, within Xcc-8004.5095.1 at 4831.647 kb on + strand, within Xcc-8004.5095.1 at 4831.647 kb on + strand, within Xcc-8004.5095.1 at 4831.647 kb on + strand, within Xcc-8004.5095.1 at 4831.648 kb on - strand, within Xcc-8004.5095.1 at 4831.648 kb on - strand, within Xcc-8004.5095.1 at 4831.648 kb on - strand, within Xcc-8004.5095.1 at 4831.648 kb on - strand, within Xcc-8004.5095.1 at 4831.653 kb on + strand, within Xcc-8004.5095.1 at 4831.653 kb on + strand, within Xcc-8004.5095.1 at 4831.654 kb on - strand, within Xcc-8004.5095.1 at 4831.665 kb on + strand, within Xcc-8004.5095.1 at 4831.899 kb on + strand, within Xcc-8004.5095.1 at 4831.899 kb on + strand, within Xcc-8004.5095.1 at 4831.899 kb on + strand, within Xcc-8004.5095.1 at 4831.900 kb on - strand, within Xcc-8004.5095.1 at 4831.900 kb on - strand, within Xcc-8004.5095.1 at 4831.900 kb on - strand, within Xcc-8004.5095.1 at 4831.921 kb on + strand, within Xcc-8004.5095.1 at 4831.922 kb on - strand, within Xcc-8004.5095.1 at 4831.922 kb on - strand, within Xcc-8004.5095.1 at 4831.922 kb on - strand, within Xcc-8004.5095.1 at 4831.922 kb on - strand, within Xcc-8004.5095.1 at 4831.922 kb on - strand, within Xcc-8004.5095.1 at 4831.922 kb on - strand, within Xcc-8004.5095.1 at 4831.982 kb on - strand at 4832.104 kb on + strand at 4832.104 kb on + strand at 4832.104 kb on + strand at 4832.105 kb on - strand at 4832.105 kb on - strand at 4832.105 kb on - strand at 4832.105 kb on - strand at 4832.105 kb on - strand at 4832.195 kb on + strand at 4832.195 kb on + strand at 4832.563 kb on + strand, within Xcc-8004.5096.1 at 4832.564 kb on - strand, within Xcc-8004.5096.1 at 4832.687 kb on + strand, within Xcc-8004.5096.1 at 4832.687 kb on + strand, within Xcc-8004.5096.1 at 4832.687 kb on + strand, within Xcc-8004.5096.1 at 4832.871 kb on + strand, within Xcc-8004.5096.1 at 4832.871 kb on + strand, within Xcc-8004.5096.1 at 4832.871 kb on + strand, within Xcc-8004.5096.1 at 4832.871 kb on + strand, within Xcc-8004.5096.1 at 4832.871 kb on + strand, within Xcc-8004.5096.1 at 4832.871 kb on + strand, within Xcc-8004.5096.1 at 4832.871 kb on + strand, within Xcc-8004.5096.1 at 4832.871 kb on + strand, within Xcc-8004.5096.1 at 4832.871 kb on + strand, within Xcc-8004.5096.1 at 4832.871 kb on + strand, within Xcc-8004.5096.1 at 4832.871 kb on + strand, within Xcc-8004.5096.1 at 4832.872 kb on - strand, within Xcc-8004.5096.1 at 4832.872 kb on - strand, within Xcc-8004.5096.1 at 4832.872 kb on - strand, within Xcc-8004.5096.1 at 4832.872 kb on - strand, within Xcc-8004.5096.1 at 4832.872 kb on - strand, within Xcc-8004.5096.1 at 4832.872 kb on - strand, within Xcc-8004.5096.1 at 4832.872 kb on - strand, within Xcc-8004.5096.1 at 4832.872 kb on - strand, within Xcc-8004.5096.1 at 4832.872 kb on - strand, within Xcc-8004.5096.1 at 4832.872 kb on - strand, within Xcc-8004.5096.1 at 4832.872 kb on - strand, within Xcc-8004.5096.1 at 4832.872 kb on - strand, within Xcc-8004.5096.1 at 4832.872 kb on - strand, within Xcc-8004.5096.1 at 4833.086 kb on + strand, within Xcc-8004.5096.1 at 4833.086 kb on + strand, within Xcc-8004.5096.1 at 4833.086 kb on + strand, within Xcc-8004.5096.1 at 4833.087 kb on - strand, within Xcc-8004.5096.1 at 4833.087 kb on - strand, within Xcc-8004.5096.1 at 4833.087 kb on - strand, within Xcc-8004.5096.1 at 4833.108 kb on + strand, within Xcc-8004.5096.1 at 4833.108 kb on + strand, within Xcc-8004.5096.1 at 4833.134 kb on + strand, within Xcc-8004.5096.1 at 4833.134 kb on + strand, within Xcc-8004.5096.1 at 4833.135 kb on - strand, within Xcc-8004.5096.1 at 4833.135 kb on - strand, within Xcc-8004.5096.1 at 4833.135 kb on - strand, within Xcc-8004.5096.1 at 4833.135 kb on - strand, within Xcc-8004.5096.1 at 4833.135 kb on - strand, within Xcc-8004.5096.1 at 4833.135 kb on - strand, within Xcc-8004.5096.1 at 4833.150 kb on + strand, within Xcc-8004.5096.1 at 4833.150 kb on + strand, within Xcc-8004.5096.1 at 4833.150 kb on + strand, within Xcc-8004.5096.1 at 4833.150 kb on + strand, within Xcc-8004.5096.1 at 4833.150 kb on + strand, within Xcc-8004.5096.1 at 4833.151 kb on - strand, within Xcc-8004.5096.1 at 4833.243 kb on + strand, within Xcc-8004.5096.1 at 4833.244 kb on - strand, within Xcc-8004.5096.1 at 4833.244 kb on - strand, within Xcc-8004.5096.1 at 4833.244 kb on - strand, within Xcc-8004.5096.1 at 4833.466 kb on + strand at 4833.467 kb on - strand at 4833.522 kb on + strand at 4833.522 kb on + strand at 4833.522 kb on + strand at 4833.523 kb on - strand at 4833.523 kb on - strand at 4833.523 kb on - strand at 4833.523 kb on - strand at 4833.643 kb on - strand at 4833.643 kb on - strand at 4833.653 kb on + strand at 4833.653 kb on + strand at 4833.653 kb on + strand at 4833.654 kb on - strand at 4833.654 kb on - strand at 4833.654 kb on - strand at 4833.654 kb on - strand at 4833.654 kb on - strand at 4833.654 kb on - strand at 4833.657 kb on + strand at 4833.657 kb on + strand at 4833.657 kb on + strand at 4833.657 kb on + strand at 4833.657 kb on + strand at 4833.657 kb on + strand at 4833.657 kb on + strand at 4833.657 kb on + strand at 4833.657 kb on + strand at 4833.657 kb on + strand at 4833.657 kb on + strand at 4833.657 kb on + strand at 4833.657 kb on + strand at 4833.657 kb on + strand at 4833.658 kb on - strand at 4833.658 kb on - strand at 4833.658 kb on - strand at 4833.658 kb on - strand at 4833.658 kb on - strand at 4833.658 kb on - strand at 4833.658 kb on - strand at 4833.658 kb on - strand at 4833.658 kb on - strand at 4833.658 kb on - strand at 4833.658 kb on - strand at 4833.658 kb on - strand at 4833.658 kb on - strand at 4833.658 kb on - strand at 4833.855 kb on + strand at 4833.955 kb on + strand at 4833.955 kb on + strand at 4833.955 kb on + strand at 4833.955 kb on + strand at 4833.956 kb on - strand at 4833.956 kb on - strand at 4833.956 kb on - strand at 4833.956 kb on - strand at 4833.956 kb on - strand at 4833.956 kb on - strand at 4834.152 kb on + strand at 4834.152 kb on + strand at 4834.152 kb on + strand at 4834.153 kb on - strand at 4834.153 kb on - strand at 4834.153 kb on - strand at 4834.187 kb on + strand at 4834.187 kb on + strand at 4834.188 kb on - strand at 4834.188 kb on - strand at 4834.188 kb on - strand at 4834.191 kb on + strand at 4834.191 kb on + strand at 4834.192 kb on - strand at 4834.192 kb on - strand at 4834.192 kb on - strand at 4834.192 kb on - strand at 4834.192 kb on - strand at 4834.275 kb on + strand, within Xcc-8004.5097.1 at 4834.275 kb on + strand, within Xcc-8004.5097.1 at 4834.275 kb on + strand, within Xcc-8004.5097.1 at 4834.276 kb on - strand, within Xcc-8004.5097.1 at 4834.276 kb on - strand, within Xcc-8004.5097.1 at 4834.276 kb on - strand, within Xcc-8004.5097.1 at 4834.304 kb on + strand, within Xcc-8004.5097.1 at 4834.304 kb on + strand, within Xcc-8004.5097.1 at 4834.305 kb on - strand, within Xcc-8004.5097.1 at 4834.440 kb on + strand, within Xcc-8004.5097.1 at 4834.440 kb on + strand, within Xcc-8004.5097.1 at 4834.440 kb on + strand, within Xcc-8004.5097.1 at 4834.441 kb on - strand, within Xcc-8004.5097.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3 remove 4,831,191 + Xcc-8004.5095.1 0.16 +0.8 4,831,191 + Xcc-8004.5095.1 0.16 +2.2 4,831,191 + Xcc-8004.5095.1 0.16 +0.9 4,831,191 + Xcc-8004.5095.1 0.16 +1.6 4,831,192 - Xcc-8004.5095.1 0.16 +1.3 4,831,192 - Xcc-8004.5095.1 0.16 +0.0 4,831,192 - Xcc-8004.5095.1 0.16 +0.2 4,831,192 - Xcc-8004.5095.1 0.16 +0.0 4,831,216 - Xcc-8004.5095.1 0.18 +5.2 4,831,371 + Xcc-8004.5095.1 0.34 +1.6 4,831,371 + Xcc-8004.5095.1 0.34 +0.9 4,831,372 - Xcc-8004.5095.1 0.34 +0.4 4,831,434 + Xcc-8004.5095.1 0.40 -1.7 4,831,434 + Xcc-8004.5095.1 0.40 +0.3 4,831,434 + Xcc-8004.5095.1 0.40 -3.2 4,831,435 - Xcc-8004.5095.1 0.40 -0.2 4,831,435 - Xcc-8004.5095.1 0.40 -1.1 4,831,435 - Xcc-8004.5095.1 0.40 +0.4 4,831,587 + Xcc-8004.5095.1 0.55 -2.2 4,831,587 + Xcc-8004.5095.1 0.55 -3.9 4,831,587 + Xcc-8004.5095.1 0.55 -1.1 4,831,587 + Xcc-8004.5095.1 0.55 -2.1 4,831,587 + Xcc-8004.5095.1 0.55 +1.8 4,831,588 - Xcc-8004.5095.1 0.55 -0.2 4,831,647 + Xcc-8004.5095.1 0.61 -1.4 4,831,647 + Xcc-8004.5095.1 0.61 -2.6 4,831,647 + Xcc-8004.5095.1 0.61 +1.6 4,831,647 + Xcc-8004.5095.1 0.61 -1.6 4,831,647 + Xcc-8004.5095.1 0.61 -0.7 4,831,647 + Xcc-8004.5095.1 0.61 +1.0 4,831,647 + Xcc-8004.5095.1 0.61 +1.7 4,831,647 + Xcc-8004.5095.1 0.61 +1.6 4,831,647 + Xcc-8004.5095.1 0.61 +1.9 4,831,647 + Xcc-8004.5095.1 0.61 +0.3 4,831,647 + Xcc-8004.5095.1 0.61 +0.5 4,831,648 - Xcc-8004.5095.1 0.61 +1.4 4,831,648 - Xcc-8004.5095.1 0.61 +0.9 4,831,648 - Xcc-8004.5095.1 0.61 +0.1 4,831,648 - Xcc-8004.5095.1 0.61 -1.4 4,831,653 + Xcc-8004.5095.1 0.62 -0.1 4,831,653 + Xcc-8004.5095.1 0.62 +0.0 4,831,654 - Xcc-8004.5095.1 0.62 +1.0 4,831,665 + Xcc-8004.5095.1 0.63 -3.4 4,831,899 + Xcc-8004.5095.1 0.86 -3.2 4,831,899 + Xcc-8004.5095.1 0.86 -1.8 4,831,899 + Xcc-8004.5095.1 0.86 +2.5 4,831,900 - Xcc-8004.5095.1 0.86 -2.3 4,831,900 - Xcc-8004.5095.1 0.86 +0.7 4,831,900 - Xcc-8004.5095.1 0.86 +0.7 4,831,921 + Xcc-8004.5095.1 0.88 -0.6 4,831,922 - Xcc-8004.5095.1 0.88 -0.4 4,831,922 - Xcc-8004.5095.1 0.88 -0.2 4,831,922 - Xcc-8004.5095.1 0.88 +1.3 4,831,922 - Xcc-8004.5095.1 0.88 -1.1 4,831,922 - Xcc-8004.5095.1 0.88 +1.5 4,831,922 - Xcc-8004.5095.1 0.88 +1.9 4,831,982 - -1.1 4,832,104 + +1.1 4,832,104 + -1.0 4,832,104 + +0.6 4,832,105 - +1.2 4,832,105 - -3.1 4,832,105 - -2.1 4,832,105 - -2.9 4,832,105 - -1.8 4,832,195 + +2.5 4,832,195 + -0.1 4,832,563 + Xcc-8004.5096.1 0.34 +0.4 4,832,564 - Xcc-8004.5096.1 0.34 -0.9 4,832,687 + Xcc-8004.5096.1 0.43 +2.9 4,832,687 + Xcc-8004.5096.1 0.43 -0.8 4,832,687 + Xcc-8004.5096.1 0.43 +1.8 4,832,871 + Xcc-8004.5096.1 0.57 -2.2 4,832,871 + Xcc-8004.5096.1 0.57 +1.8 4,832,871 + Xcc-8004.5096.1 0.57 +0.1 4,832,871 + Xcc-8004.5096.1 0.57 +1.1 4,832,871 + Xcc-8004.5096.1 0.57 -2.5 4,832,871 + Xcc-8004.5096.1 0.57 -0.1 4,832,871 + Xcc-8004.5096.1 0.57 -2.2 4,832,871 + Xcc-8004.5096.1 0.57 -1.1 4,832,871 + Xcc-8004.5096.1 0.57 +0.9 4,832,871 + Xcc-8004.5096.1 0.57 -2.9 4,832,871 + Xcc-8004.5096.1 0.57 -1.3 4,832,872 - Xcc-8004.5096.1 0.57 +1.2 4,832,872 - Xcc-8004.5096.1 0.57 -1.4 4,832,872 - Xcc-8004.5096.1 0.57 -2.5 4,832,872 - Xcc-8004.5096.1 0.57 -2.7 4,832,872 - Xcc-8004.5096.1 0.57 -2.3 4,832,872 - Xcc-8004.5096.1 0.57 +1.1 4,832,872 - Xcc-8004.5096.1 0.57 -2.2 4,832,872 - Xcc-8004.5096.1 0.57 -1.1 4,832,872 - Xcc-8004.5096.1 0.57 +0.5 4,832,872 - Xcc-8004.5096.1 0.57 +1.6 4,832,872 - Xcc-8004.5096.1 0.57 -0.3 4,832,872 - Xcc-8004.5096.1 0.57 +0.8 4,832,872 - Xcc-8004.5096.1 0.57 -0.7 4,833,086 + Xcc-8004.5096.1 0.73 +1.6 4,833,086 + Xcc-8004.5096.1 0.73 -2.4 4,833,086 + Xcc-8004.5096.1 0.73 +2.4 4,833,087 - Xcc-8004.5096.1 0.73 -0.9 4,833,087 - Xcc-8004.5096.1 0.73 +0.3 4,833,087 - Xcc-8004.5096.1 0.73 -2.0 4,833,108 + Xcc-8004.5096.1 0.74 -1.5 4,833,108 + Xcc-8004.5096.1 0.74 +2.3 4,833,134 + Xcc-8004.5096.1 0.76 -0.1 4,833,134 + Xcc-8004.5096.1 0.76 +1.6 4,833,135 - Xcc-8004.5096.1 0.76 -0.6 4,833,135 - Xcc-8004.5096.1 0.76 +0.6 4,833,135 - Xcc-8004.5096.1 0.76 +0.0 4,833,135 - Xcc-8004.5096.1 0.76 -0.9 4,833,135 - Xcc-8004.5096.1 0.76 -0.5 4,833,135 - Xcc-8004.5096.1 0.76 -2.6 4,833,150 + Xcc-8004.5096.1 0.77 -1.1 4,833,150 + Xcc-8004.5096.1 0.77 +0.7 4,833,150 + Xcc-8004.5096.1 0.77 -0.1 4,833,150 + Xcc-8004.5096.1 0.77 -0.5 4,833,150 + Xcc-8004.5096.1 0.77 +0.9 4,833,151 - Xcc-8004.5096.1 0.77 +1.5 4,833,243 + Xcc-8004.5096.1 0.84 -2.3 4,833,244 - Xcc-8004.5096.1 0.84 +1.6 4,833,244 - Xcc-8004.5096.1 0.84 -0.1 4,833,244 - Xcc-8004.5096.1 0.84 +0.5 4,833,466 + +3.1 4,833,467 - +0.6 4,833,522 + +2.7 4,833,522 + -0.9 4,833,522 + -1.9 4,833,523 - -0.9 4,833,523 - +1.8 4,833,523 - +1.1 4,833,523 - +0.5 4,833,643 - -1.1 4,833,643 - +0.9 4,833,653 + +0.0 4,833,653 + -1.1 4,833,653 + -1.3 4,833,654 - -1.5 4,833,654 - +1.3 4,833,654 - -0.3 4,833,654 - +0.0 4,833,654 - -1.3 4,833,654 - +3.1 4,833,657 + -2.3 4,833,657 + +1.0 4,833,657 + +3.0 4,833,657 + -0.6 4,833,657 + -1.9 4,833,657 + -0.1 4,833,657 + +0.7 4,833,657 + -3.1 4,833,657 + +0.3 4,833,657 + +0.3 4,833,657 + -1.3 4,833,657 + -0.5 4,833,657 + -0.9 4,833,657 + -1.9 4,833,658 - -3.0 4,833,658 - +0.3 4,833,658 - +2.0 4,833,658 - +1.4 4,833,658 - -2.9 4,833,658 - +3.0 4,833,658 - -2.8 4,833,658 - -1.2 4,833,658 - +2.2 4,833,658 - -0.9 4,833,658 - -0.6 4,833,658 - -0.4 4,833,658 - +1.0 4,833,658 - -2.0 4,833,855 + -2.5 4,833,955 + -1.2 4,833,955 + +0.3 4,833,955 + +2.0 4,833,955 + +0.1 4,833,956 - +2.6 4,833,956 - -1.4 4,833,956 - -2.3 4,833,956 - -1.7 4,833,956 - +0.1 4,833,956 - -3.5 4,834,152 + -2.3 4,834,152 + -1.1 4,834,152 + +0.2 4,834,153 - +1.0 4,834,153 - +0.6 4,834,153 - +0.2 4,834,187 + -1.5 4,834,187 + +0.4 4,834,188 - +0.8 4,834,188 - +0.5 4,834,188 - +0.1 4,834,191 + +1.5 4,834,191 + +0.2 4,834,192 - -1.3 4,834,192 - +1.4 4,834,192 - -2.0 4,834,192 - -2.9 4,834,192 - -2.4 4,834,275 + Xcc-8004.5097.1 0.12 +2.1 4,834,275 + Xcc-8004.5097.1 0.12 +2.5 4,834,275 + Xcc-8004.5097.1 0.12 +4.9 4,834,276 - Xcc-8004.5097.1 0.12 -1.3 4,834,276 - Xcc-8004.5097.1 0.12 +1.7 4,834,276 - Xcc-8004.5097.1 0.12 -1.9 4,834,304 + Xcc-8004.5097.1 0.13 -0.4 4,834,304 + Xcc-8004.5097.1 0.13 +1.5 4,834,305 - Xcc-8004.5097.1 0.13 -2.8 4,834,440 + Xcc-8004.5097.1 0.19 +1.3 4,834,440 + Xcc-8004.5097.1 0.19 -0.7 4,834,440 + Xcc-8004.5097.1 0.19 -0.4 4,834,441 - Xcc-8004.5097.1 0.19 -2.1
Or see this region's nucleotide sequence