Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5087.1

Experiment: Xylemvessel barcodes T0L1P3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.5085.1 and Xcc-8004.5086.1 overlap by 11 nucleotidesXcc-8004.5086.1 and Xcc-8004.5087.1 are separated by 87 nucleotidesXcc-8004.5087.1 and Xcc-8004.5088.1 overlap by 77 nucleotidesXcc-8004.5088.1 and Xcc-8004.5090.1 overlap by 4 nucleotides Xcc-8004.5085.1: Xcc-8004.5085.1 - FIG021862: membrane protein, exporter, at 4,823,236 to 4,825,602 Xcc-8004.5085.1 Xcc-8004.5086.1: Xcc-8004.5086.1 - membrane protein, inferred for ABFAE pathway, at 4,825,592 to 4,825,816 Xcc-8004.5086.1 Xcc-8004.5087.1: Xcc-8004.5087.1 - FIG027190: Putative transmembrane protein, at 4,825,904 to 4,826,551 Xcc-8004.5087.1 Xcc-8004.5088.1: Xcc-8004.5088.1 - Lysophospholipid acyltransferase, at 4,826,475 to 4,827,449 Xcc-8004.5088.1 Xcc-8004.5090.1: Xcc-8004.5090.1 - (3R)-hydroxymyristoyl-[ACP] dehydratase (EC 4.2.1.-), at 4,827,446 to 4,827,733 Xcc-8004.5090.1 Position (kb) 4825 4826 4827Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4824.963 kb on - strand, within Xcc-8004.5085.1at 4825.009 kb on + strand, within Xcc-8004.5085.1at 4825.010 kb on - strand, within Xcc-8004.5085.1at 4825.010 kb on - strand, within Xcc-8004.5085.1at 4825.247 kb on + strand, within Xcc-8004.5085.1at 4825.247 kb on + strand, within Xcc-8004.5085.1at 4825.346 kb on + strand, within Xcc-8004.5085.1at 4825.346 kb on + strand, within Xcc-8004.5085.1at 4825.346 kb on + strand, within Xcc-8004.5085.1at 4825.347 kb on - strand, within Xcc-8004.5085.1at 4825.347 kb on - strand, within Xcc-8004.5085.1at 4825.347 kb on - strand, within Xcc-8004.5085.1at 4825.394 kb on - strandat 4825.486 kb on - strandat 4825.588 kb on + strandat 4825.588 kb on + strandat 4825.589 kb on - strandat 4825.589 kb on - strandat 4825.589 kb on - strandat 4825.703 kb on + strand, within Xcc-8004.5086.1at 4825.704 kb on - strand, within Xcc-8004.5086.1at 4825.704 kb on - strand, within Xcc-8004.5086.1at 4825.704 kb on - strand, within Xcc-8004.5086.1at 4825.748 kb on + strand, within Xcc-8004.5086.1at 4826.053 kb on - strand, within Xcc-8004.5087.1at 4826.149 kb on - strand, within Xcc-8004.5087.1at 4826.462 kb on + strand, within Xcc-8004.5087.1at 4826.462 kb on + strand, within Xcc-8004.5087.1at 4826.463 kb on - strand, within Xcc-8004.5087.1at 4826.463 kb on - strand, within Xcc-8004.5087.1at 4826.463 kb on - strand, within Xcc-8004.5087.1at 4826.516 kb on + strandat 4826.516 kb on + strandat 4826.516 kb on + strandat 4826.516 kb on + strandat 4826.572 kb on + strandat 4826.573 kb on - strand, within Xcc-8004.5088.1at 4826.573 kb on - strand, within Xcc-8004.5088.1at 4826.590 kb on + strand, within Xcc-8004.5088.1at 4826.590 kb on + strand, within Xcc-8004.5088.1at 4826.590 kb on + strand, within Xcc-8004.5088.1at 4826.591 kb on - strand, within Xcc-8004.5088.1at 4826.608 kb on + strand, within Xcc-8004.5088.1at 4826.608 kb on + strand, within Xcc-8004.5088.1at 4826.608 kb on + strand, within Xcc-8004.5088.1at 4826.608 kb on + strand, within Xcc-8004.5088.1at 4826.608 kb on + strand, within Xcc-8004.5088.1at 4826.608 kb on + strand, within Xcc-8004.5088.1at 4826.608 kb on + strand, within Xcc-8004.5088.1at 4826.609 kb on - strand, within Xcc-8004.5088.1at 4826.609 kb on - strand, within Xcc-8004.5088.1at 4826.609 kb on - strand, within Xcc-8004.5088.1at 4826.609 kb on - strand, within Xcc-8004.5088.1at 4826.609 kb on - strand, within Xcc-8004.5088.1at 4826.609 kb on - strand, within Xcc-8004.5088.1at 4826.609 kb on - strand, within Xcc-8004.5088.1at 4826.609 kb on - strand, within Xcc-8004.5088.1at 4826.609 kb on - strand, within Xcc-8004.5088.1at 4826.629 kb on + strand, within Xcc-8004.5088.1at 4826.630 kb on - strand, within Xcc-8004.5088.1at 4826.630 kb on - strand, within Xcc-8004.5088.1at 4826.716 kb on + strand, within Xcc-8004.5088.1at 4826.716 kb on + strand, within Xcc-8004.5088.1at 4826.717 kb on - strand, within Xcc-8004.5088.1at 4826.717 kb on - strand, within Xcc-8004.5088.1at 4826.810 kb on + strand, within Xcc-8004.5088.1at 4826.810 kb on + strand, within Xcc-8004.5088.1at 4826.810 kb on + strand, within Xcc-8004.5088.1at 4826.811 kb on - strand, within Xcc-8004.5088.1at 4826.811 kb on - strand, within Xcc-8004.5088.1at 4827.002 kb on + strand, within Xcc-8004.5088.1at 4827.002 kb on + strand, within Xcc-8004.5088.1at 4827.002 kb on + strand, within Xcc-8004.5088.1at 4827.002 kb on + strand, within Xcc-8004.5088.1at 4827.003 kb on - strand, within Xcc-8004.5088.1at 4827.190 kb on + strand, within Xcc-8004.5088.1at 4827.190 kb on + strand, within Xcc-8004.5088.1at 4827.190 kb on + strand, within Xcc-8004.5088.1at 4827.190 kb on + strand, within Xcc-8004.5088.1at 4827.190 kb on + strand, within Xcc-8004.5088.1at 4827.190 kb on + strand, within Xcc-8004.5088.1at 4827.190 kb on + strand, within Xcc-8004.5088.1at 4827.191 kb on - strand, within Xcc-8004.5088.1at 4827.191 kb on - strand, within Xcc-8004.5088.1at 4827.191 kb on - strand, within Xcc-8004.5088.1at 4827.191 kb on - strand, within Xcc-8004.5088.1at 4827.191 kb on - strand, within Xcc-8004.5088.1at 4827.191 kb on - strand, within Xcc-8004.5088.1at 4827.191 kb on - strand, within Xcc-8004.5088.1at 4827.191 kb on - strand, within Xcc-8004.5088.1at 4827.221 kb on + strand, within Xcc-8004.5088.1at 4827.221 kb on + strand, within Xcc-8004.5088.1at 4827.221 kb on + strand, within Xcc-8004.5088.1at 4827.221 kb on + strand, within Xcc-8004.5088.1at 4827.222 kb on - strand, within Xcc-8004.5088.1at 4827.222 kb on - strand, within Xcc-8004.5088.1at 4827.222 kb on - strand, within Xcc-8004.5088.1at 4827.222 kb on - strand, within Xcc-8004.5088.1at 4827.222 kb on - strand, within Xcc-8004.5088.1at 4827.222 kb on - strand, within Xcc-8004.5088.1at 4827.222 kb on - strand, within Xcc-8004.5088.1at 4827.222 kb on - strand, within Xcc-8004.5088.1at 4827.222 kb on - strand, within Xcc-8004.5088.1at 4827.222 kb on - strand, within Xcc-8004.5088.1at 4827.227 kb on + strand, within Xcc-8004.5088.1at 4827.227 kb on + strand, within Xcc-8004.5088.1at 4827.228 kb on - strand, within Xcc-8004.5088.1at 4827.228 kb on - strand, within Xcc-8004.5088.1at 4827.280 kb on + strand, within Xcc-8004.5088.1at 4827.281 kb on - strand, within Xcc-8004.5088.1at 4827.281 kb on - strand, within Xcc-8004.5088.1at 4827.325 kb on + strand, within Xcc-8004.5088.1at 4827.325 kb on + strand, within Xcc-8004.5088.1at 4827.325 kb on + strand, within Xcc-8004.5088.1at 4827.325 kb on + strand, within Xcc-8004.5088.1at 4827.325 kb on + strand, within Xcc-8004.5088.1at 4827.325 kb on + strand, within Xcc-8004.5088.1at 4827.325 kb on + strand, within Xcc-8004.5088.1at 4827.326 kb on - strand, within Xcc-8004.5088.1at 4827.340 kb on + strand, within Xcc-8004.5088.1at 4827.340 kb on + strand, within Xcc-8004.5088.1at 4827.340 kb on + strand, within Xcc-8004.5088.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
remove
4,824,963 - Xcc-8004.5085.1 0.73 -1.3
4,825,009 + Xcc-8004.5085.1 0.75 +0.8
4,825,010 - Xcc-8004.5085.1 0.75 -0.2
4,825,010 - Xcc-8004.5085.1 0.75 -1.0
4,825,247 + Xcc-8004.5085.1 0.85 -2.4
4,825,247 + Xcc-8004.5085.1 0.85 -1.8
4,825,346 + Xcc-8004.5085.1 0.89 -2.5
4,825,346 + Xcc-8004.5085.1 0.89 +0.8
4,825,346 + Xcc-8004.5085.1 0.89 -2.6
4,825,347 - Xcc-8004.5085.1 0.89 -1.7
4,825,347 - Xcc-8004.5085.1 0.89 +0.5
4,825,347 - Xcc-8004.5085.1 0.89 -0.5
4,825,394 - +2.3
4,825,486 - -1.4
4,825,588 + +0.8
4,825,588 + -1.3
4,825,589 - +2.0
4,825,589 - +0.2
4,825,589 - -1.2
4,825,703 + Xcc-8004.5086.1 0.49 +0.3
4,825,704 - Xcc-8004.5086.1 0.50 +1.9
4,825,704 - Xcc-8004.5086.1 0.50 -3.2
4,825,704 - Xcc-8004.5086.1 0.50 -1.5
4,825,748 + Xcc-8004.5086.1 0.69 +0.8
4,826,053 - Xcc-8004.5087.1 0.23 -1.6
4,826,149 - Xcc-8004.5087.1 0.38 -1.3
4,826,462 + Xcc-8004.5087.1 0.86 +0.1
4,826,462 + Xcc-8004.5087.1 0.86 -0.9
4,826,463 - Xcc-8004.5087.1 0.86 -1.9
4,826,463 - Xcc-8004.5087.1 0.86 +1.1
4,826,463 - Xcc-8004.5087.1 0.86 -1.4
4,826,516 + +1.2
4,826,516 + +0.5
4,826,516 + -1.3
4,826,516 + -0.0
4,826,572 + +1.5
4,826,573 - Xcc-8004.5088.1 0.10 -1.5
4,826,573 - Xcc-8004.5088.1 0.10 -2.2
4,826,590 + Xcc-8004.5088.1 0.12 -1.4
4,826,590 + Xcc-8004.5088.1 0.12 +2.3
4,826,590 + Xcc-8004.5088.1 0.12 -0.2
4,826,591 - Xcc-8004.5088.1 0.12 -0.6
4,826,608 + Xcc-8004.5088.1 0.14 +1.0
4,826,608 + Xcc-8004.5088.1 0.14 +0.7
4,826,608 + Xcc-8004.5088.1 0.14 -1.5
4,826,608 + Xcc-8004.5088.1 0.14 -0.7
4,826,608 + Xcc-8004.5088.1 0.14 +0.6
4,826,608 + Xcc-8004.5088.1 0.14 -1.5
4,826,608 + Xcc-8004.5088.1 0.14 -1.6
4,826,609 - Xcc-8004.5088.1 0.14 +0.9
4,826,609 - Xcc-8004.5088.1 0.14 -2.1
4,826,609 - Xcc-8004.5088.1 0.14 -0.3
4,826,609 - Xcc-8004.5088.1 0.14 -2.3
4,826,609 - Xcc-8004.5088.1 0.14 +0.0
4,826,609 - Xcc-8004.5088.1 0.14 +0.4
4,826,609 - Xcc-8004.5088.1 0.14 -0.5
4,826,609 - Xcc-8004.5088.1 0.14 -2.6
4,826,609 - Xcc-8004.5088.1 0.14 -1.5
4,826,629 + Xcc-8004.5088.1 0.16 -2.3
4,826,630 - Xcc-8004.5088.1 0.16 -0.9
4,826,630 - Xcc-8004.5088.1 0.16 +1.1
4,826,716 + Xcc-8004.5088.1 0.25 -0.4
4,826,716 + Xcc-8004.5088.1 0.25 -0.2
4,826,717 - Xcc-8004.5088.1 0.25 -1.0
4,826,717 - Xcc-8004.5088.1 0.25 +0.0
4,826,810 + Xcc-8004.5088.1 0.34 +2.5
4,826,810 + Xcc-8004.5088.1 0.34 +2.2
4,826,810 + Xcc-8004.5088.1 0.34 -1.6
4,826,811 - Xcc-8004.5088.1 0.34 +0.3
4,826,811 - Xcc-8004.5088.1 0.34 -1.0
4,827,002 + Xcc-8004.5088.1 0.54 -1.6
4,827,002 + Xcc-8004.5088.1 0.54 +1.9
4,827,002 + Xcc-8004.5088.1 0.54 -0.6
4,827,002 + Xcc-8004.5088.1 0.54 -1.2
4,827,003 - Xcc-8004.5088.1 0.54 -1.7
4,827,190 + Xcc-8004.5088.1 0.73 -1.5
4,827,190 + Xcc-8004.5088.1 0.73 +3.1
4,827,190 + Xcc-8004.5088.1 0.73 -1.3
4,827,190 + Xcc-8004.5088.1 0.73 -1.6
4,827,190 + Xcc-8004.5088.1 0.73 -1.7
4,827,190 + Xcc-8004.5088.1 0.73 -2.2
4,827,190 + Xcc-8004.5088.1 0.73 -0.9
4,827,191 - Xcc-8004.5088.1 0.73 -1.9
4,827,191 - Xcc-8004.5088.1 0.73 +1.4
4,827,191 - Xcc-8004.5088.1 0.73 +1.7
4,827,191 - Xcc-8004.5088.1 0.73 +0.5
4,827,191 - Xcc-8004.5088.1 0.73 -2.2
4,827,191 - Xcc-8004.5088.1 0.73 -0.4
4,827,191 - Xcc-8004.5088.1 0.73 -2.3
4,827,191 - Xcc-8004.5088.1 0.73 +0.5
4,827,221 + Xcc-8004.5088.1 0.77 +1.3
4,827,221 + Xcc-8004.5088.1 0.77 -1.7
4,827,221 + Xcc-8004.5088.1 0.77 -3.4
4,827,221 + Xcc-8004.5088.1 0.77 +1.4
4,827,222 - Xcc-8004.5088.1 0.77 +0.9
4,827,222 - Xcc-8004.5088.1 0.77 -1.6
4,827,222 - Xcc-8004.5088.1 0.77 +1.6
4,827,222 - Xcc-8004.5088.1 0.77 -2.5
4,827,222 - Xcc-8004.5088.1 0.77 +2.1
4,827,222 - Xcc-8004.5088.1 0.77 -1.3
4,827,222 - Xcc-8004.5088.1 0.77 -3.7
4,827,222 - Xcc-8004.5088.1 0.77 +1.8
4,827,222 - Xcc-8004.5088.1 0.77 +1.4
4,827,222 - Xcc-8004.5088.1 0.77 +1.6
4,827,227 + Xcc-8004.5088.1 0.77 -1.4
4,827,227 + Xcc-8004.5088.1 0.77 -2.1
4,827,228 - Xcc-8004.5088.1 0.77 -0.5
4,827,228 - Xcc-8004.5088.1 0.77 -1.3
4,827,280 + Xcc-8004.5088.1 0.83 +1.8
4,827,281 - Xcc-8004.5088.1 0.83 +0.3
4,827,281 - Xcc-8004.5088.1 0.83 -2.4
4,827,325 + Xcc-8004.5088.1 0.87 +2.0
4,827,325 + Xcc-8004.5088.1 0.87 -3.3
4,827,325 + Xcc-8004.5088.1 0.87 -1.7
4,827,325 + Xcc-8004.5088.1 0.87 +0.2
4,827,325 + Xcc-8004.5088.1 0.87 +0.7
4,827,325 + Xcc-8004.5088.1 0.87 -1.4
4,827,325 + Xcc-8004.5088.1 0.87 -0.6
4,827,326 - Xcc-8004.5088.1 0.87 +0.4
4,827,340 + Xcc-8004.5088.1 0.89 -0.1
4,827,340 + Xcc-8004.5088.1 0.89 -1.6
4,827,340 + Xcc-8004.5088.1 0.89 +0.7

Or see this region's nucleotide sequence