Experiment: Xylemvessel barcodes T0L1P3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5070.1 and Xcc-8004.5071.1 are separated by 63 nucleotides Xcc-8004.5071.1 and Xcc-8004.5072.1 are separated by 26 nucleotides
Xcc-8004.5070.1: Xcc-8004.5070.1 - Glucoamylase (EC 3.2.1.3), at 4,809,378 to 4,811,177
Xcc-8004.5070.1
Xcc-8004.5071.1: Xcc-8004.5071.1 - FIG01210955: hypothetical protein, at 4,811,241 to 4,811,570
Xcc-8004.5071.1
Xcc-8004.5072.1: Xcc-8004.5072.1 - Ankyrin-like protein, at 4,811,597 to 4,814,920
Xcc-8004.5072.1
Position (kb) 4811
4812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4810.261 kb on + strand, within Xcc-8004.5070.1 at 4810.394 kb on - strand, within Xcc-8004.5070.1 at 4810.394 kb on - strand, within Xcc-8004.5070.1 at 4810.399 kb on + strand, within Xcc-8004.5070.1 at 4810.399 kb on + strand, within Xcc-8004.5070.1 at 4810.400 kb on - strand, within Xcc-8004.5070.1 at 4810.477 kb on + strand, within Xcc-8004.5070.1 at 4810.477 kb on + strand, within Xcc-8004.5070.1 at 4810.477 kb on + strand, within Xcc-8004.5070.1 at 4810.478 kb on - strand, within Xcc-8004.5070.1 at 4810.478 kb on - strand, within Xcc-8004.5070.1 at 4810.852 kb on - strand, within Xcc-8004.5070.1 at 4810.981 kb on + strand, within Xcc-8004.5070.1 at 4811.242 kb on + strand at 4811.314 kb on + strand, within Xcc-8004.5071.1 at 4811.314 kb on + strand, within Xcc-8004.5071.1 at 4811.314 kb on + strand, within Xcc-8004.5071.1 at 4811.315 kb on - strand, within Xcc-8004.5071.1 at 4811.315 kb on - strand, within Xcc-8004.5071.1 at 4811.315 kb on - strand, within Xcc-8004.5071.1 at 4811.315 kb on - strand, within Xcc-8004.5071.1 at 4811.315 kb on - strand, within Xcc-8004.5071.1 at 4811.315 kb on - strand, within Xcc-8004.5071.1 at 4811.320 kb on + strand, within Xcc-8004.5071.1 at 4811.321 kb on - strand, within Xcc-8004.5071.1 at 4811.321 kb on - strand, within Xcc-8004.5071.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3 remove 4,810,261 + Xcc-8004.5070.1 0.49 -0.5 4,810,394 - Xcc-8004.5070.1 0.56 +0.9 4,810,394 - Xcc-8004.5070.1 0.56 -0.0 4,810,399 + Xcc-8004.5070.1 0.57 +1.7 4,810,399 + Xcc-8004.5070.1 0.57 -2.7 4,810,400 - Xcc-8004.5070.1 0.57 -1.8 4,810,477 + Xcc-8004.5070.1 0.61 +3.4 4,810,477 + Xcc-8004.5070.1 0.61 -1.4 4,810,477 + Xcc-8004.5070.1 0.61 +0.5 4,810,478 - Xcc-8004.5070.1 0.61 +0.3 4,810,478 - Xcc-8004.5070.1 0.61 -1.8 4,810,852 - Xcc-8004.5070.1 0.82 +0.5 4,810,981 + Xcc-8004.5070.1 0.89 +0.1 4,811,242 + -0.5 4,811,314 + Xcc-8004.5071.1 0.22 -0.1 4,811,314 + Xcc-8004.5071.1 0.22 -2.0 4,811,314 + Xcc-8004.5071.1 0.22 -0.3 4,811,315 - Xcc-8004.5071.1 0.22 -1.3 4,811,315 - Xcc-8004.5071.1 0.22 +0.7 4,811,315 - Xcc-8004.5071.1 0.22 -2.9 4,811,315 - Xcc-8004.5071.1 0.22 -1.4 4,811,315 - Xcc-8004.5071.1 0.22 -1.4 4,811,315 - Xcc-8004.5071.1 0.22 -1.5 4,811,320 + Xcc-8004.5071.1 0.24 -1.2 4,811,321 - Xcc-8004.5071.1 0.24 -2.6 4,811,321 - Xcc-8004.5071.1 0.24 -1.6
Or see this region's nucleotide sequence