Experiment: Xylemvessel barcodes T0L1P3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.498.1 and Xcc-8004.500.1 are separated by 96 nucleotides Xcc-8004.500.1 and Xcc-8004.501.1 are separated by 287 nucleotides Xcc-8004.501.1 and Xcc-8004.502.1 are separated by 16 nucleotides
Xcc-8004.498.1: Xcc-8004.498.1 - Biotin synthesis protein BioC, at 457,378 to 458,262
Xcc-8004.498.1
Xcc-8004.500.1: Xcc-8004.500.1 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 458,359 to 459,141
Xcc-8004.500.1
Xcc-8004.501.1: Xcc-8004.501.1 - hypothetical protein, at 459,429 to 459,917
Xcc-8004.501.1
Xcc-8004.502.1: Xcc-8004.502.1 - Biotin synthesis protein BioH, at 459,934 to 460,695
Xcc-8004.502.1
Position (kb) 458
459
460 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 457.379 kb on + strand at 457.379 kb on + strand at 457.379 kb on + strand at 457.379 kb on + strand at 457.380 kb on - strand at 457.380 kb on - strand at 457.380 kb on - strand at 457.380 kb on - strand at 457.380 kb on - strand at 457.380 kb on - strand at 457.539 kb on - strand, within Xcc-8004.498.1 at 457.655 kb on + strand, within Xcc-8004.498.1 at 458.201 kb on + strand at 458.202 kb on - strand at 458.202 kb on - strand at 458.202 kb on - strand at 458.271 kb on + strand at 458.272 kb on - strand at 458.414 kb on + strand at 458.415 kb on - strand at 458.962 kb on + strand, within Xcc-8004.500.1 at 458.963 kb on - strand, within Xcc-8004.500.1 at 458.963 kb on - strand, within Xcc-8004.500.1 at 458.963 kb on - strand, within Xcc-8004.500.1 at 459.106 kb on + strand at 459.106 kb on + strand at 459.106 kb on + strand at 459.106 kb on + strand at 459.106 kb on + strand at 459.106 kb on + strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.107 kb on - strand at 459.382 kb on + strand at 459.382 kb on + strand at 459.382 kb on + strand at 459.382 kb on + strand at 459.382 kb on + strand at 459.383 kb on - strand at 459.383 kb on - strand at 459.383 kb on - strand at 459.386 kb on + strand at 459.484 kb on - strand, within Xcc-8004.501.1 at 459.549 kb on + strand, within Xcc-8004.501.1 at 459.549 kb on + strand, within Xcc-8004.501.1 at 459.549 kb on + strand, within Xcc-8004.501.1 at 459.550 kb on - strand, within Xcc-8004.501.1 at 459.550 kb on - strand, within Xcc-8004.501.1 at 459.716 kb on + strand, within Xcc-8004.501.1 at 459.716 kb on + strand, within Xcc-8004.501.1 at 459.716 kb on + strand, within Xcc-8004.501.1 at 459.716 kb on + strand, within Xcc-8004.501.1 at 459.716 kb on + strand, within Xcc-8004.501.1 at 459.717 kb on - strand, within Xcc-8004.501.1 at 459.717 kb on - strand, within Xcc-8004.501.1 at 459.717 kb on - strand, within Xcc-8004.501.1 at 459.755 kb on + strand, within Xcc-8004.501.1 at 459.755 kb on + strand, within Xcc-8004.501.1 at 459.755 kb on + strand, within Xcc-8004.501.1 at 459.755 kb on + strand, within Xcc-8004.501.1 at 459.756 kb on - strand, within Xcc-8004.501.1 at 459.756 kb on - strand, within Xcc-8004.501.1 at 459.756 kb on - strand, within Xcc-8004.501.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3 remove 457,379 + +1.2 457,379 + -0.9 457,379 + -1.6 457,379 + -0.8 457,380 - -1.5 457,380 - +1.4 457,380 - -0.2 457,380 - +2.5 457,380 - +0.3 457,380 - -1.1 457,539 - Xcc-8004.498.1 0.18 -0.8 457,655 + Xcc-8004.498.1 0.31 -1.1 458,201 + +1.1 458,202 - -2.6 458,202 - -3.4 458,202 - -1.6 458,271 + -0.3 458,272 - -2.8 458,414 + +1.3 458,415 - +1.6 458,962 + Xcc-8004.500.1 0.77 -0.4 458,963 - Xcc-8004.500.1 0.77 +1.2 458,963 - Xcc-8004.500.1 0.77 +0.5 458,963 - Xcc-8004.500.1 0.77 +2.8 459,106 + +2.3 459,106 + -1.8 459,106 + -0.9 459,106 + +1.1 459,106 + +2.0 459,106 + -1.6 459,107 - +0.7 459,107 - -1.6 459,107 - -2.9 459,107 - +1.9 459,107 - +1.8 459,107 - -0.7 459,107 - +3.5 459,107 - +1.3 459,107 - -0.0 459,107 - +1.4 459,107 - +0.9 459,382 + -0.2 459,382 + -0.8 459,382 + -0.7 459,382 + -2.9 459,382 + -0.1 459,383 - +0.8 459,383 - +1.0 459,383 - +0.4 459,386 + -1.1 459,484 - Xcc-8004.501.1 0.11 +1.2 459,549 + Xcc-8004.501.1 0.25 -1.5 459,549 + Xcc-8004.501.1 0.25 -2.6 459,549 + Xcc-8004.501.1 0.25 -1.9 459,550 - Xcc-8004.501.1 0.25 +1.6 459,550 - Xcc-8004.501.1 0.25 +3.6 459,716 + Xcc-8004.501.1 0.59 +1.9 459,716 + Xcc-8004.501.1 0.59 -2.3 459,716 + Xcc-8004.501.1 0.59 +0.8 459,716 + Xcc-8004.501.1 0.59 -0.0 459,716 + Xcc-8004.501.1 0.59 -2.4 459,717 - Xcc-8004.501.1 0.59 -0.8 459,717 - Xcc-8004.501.1 0.59 +2.1 459,717 - Xcc-8004.501.1 0.59 +0.2 459,755 + Xcc-8004.501.1 0.67 +2.0 459,755 + Xcc-8004.501.1 0.67 -1.3 459,755 + Xcc-8004.501.1 0.67 -0.0 459,755 + Xcc-8004.501.1 0.67 -3.3 459,756 - Xcc-8004.501.1 0.67 -1.2 459,756 - Xcc-8004.501.1 0.67 -0.9 459,756 - Xcc-8004.501.1 0.67 -1.9
Or see this region's nucleotide sequence