Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4777.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4775.1 and Xcc-8004.4776.1 overlap by 4 nucleotidesXcc-8004.4776.1 and Xcc-8004.4777.1 are separated by 75 nucleotidesXcc-8004.4777.1 and Xcc-8004.4778.1 are separated by 150 nucleotidesXcc-8004.4778.1 and Xcc-8004.4780.1 are separated by 216 nucleotides Xcc-8004.4775.1: Xcc-8004.4775.1 - Cell division protein FtsX, at 4,543,299 to 4,544,249 Xcc-8004.4775.1 Xcc-8004.4776.1: Xcc-8004.4776.1 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 4,544,246 to 4,544,932 Xcc-8004.4776.1 Xcc-8004.4777.1: Xcc-8004.4777.1 - ATP-dependent RNA helicase RhlB, at 4,545,008 to 4,546,777 Xcc-8004.4777.1 Xcc-8004.4778.1: Xcc-8004.4778.1 - Thioredoxin, at 4,546,928 to 4,547,269 Xcc-8004.4778.1 Xcc-8004.4780.1: Xcc-8004.4780.1 - Transcription termination factor Rho, at 4,547,486 to 4,549,351 Xcc-8004.4780.1 Position (kb) 4545 4546 4547Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4544.043 kb on - strand, within Xcc-8004.4775.1at 4544.043 kb on - strand, within Xcc-8004.4775.1at 4544.043 kb on - strand, within Xcc-8004.4775.1at 4544.673 kb on + strand, within Xcc-8004.4776.1at 4544.673 kb on + strand, within Xcc-8004.4776.1at 4544.673 kb on + strand, within Xcc-8004.4776.1at 4544.673 kb on + strand, within Xcc-8004.4776.1at 4544.673 kb on + strand, within Xcc-8004.4776.1at 4544.895 kb on + strandat 4544.895 kb on + strandat 4544.895 kb on + strandat 4544.896 kb on - strandat 4544.896 kb on - strandat 4544.896 kb on - strandat 4544.896 kb on - strandat 4544.941 kb on + strandat 4544.942 kb on - strandat 4545.004 kb on + strandat 4545.004 kb on + strandat 4545.004 kb on + strandat 4545.005 kb on - strandat 4545.005 kb on - strandat 4545.005 kb on - strandat 4545.093 kb on - strandat 4545.572 kb on - strand, within Xcc-8004.4777.1at 4545.606 kb on + strand, within Xcc-8004.4777.1at 4545.606 kb on + strand, within Xcc-8004.4777.1at 4545.606 kb on + strand, within Xcc-8004.4777.1at 4545.606 kb on + strand, within Xcc-8004.4777.1at 4545.606 kb on + strand, within Xcc-8004.4777.1at 4545.607 kb on - strand, within Xcc-8004.4777.1at 4545.607 kb on - strand, within Xcc-8004.4777.1at 4545.607 kb on - strand, within Xcc-8004.4777.1at 4545.607 kb on - strand, within Xcc-8004.4777.1at 4545.607 kb on - strand, within Xcc-8004.4777.1at 4545.607 kb on - strand, within Xcc-8004.4777.1at 4545.637 kb on - strand, within Xcc-8004.4777.1at 4545.708 kb on + strand, within Xcc-8004.4777.1at 4545.708 kb on + strand, within Xcc-8004.4777.1at 4545.708 kb on + strand, within Xcc-8004.4777.1at 4545.708 kb on + strand, within Xcc-8004.4777.1at 4545.708 kb on + strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.735 kb on + strand, within Xcc-8004.4777.1at 4545.735 kb on + strand, within Xcc-8004.4777.1at 4545.741 kb on + strand, within Xcc-8004.4777.1at 4545.741 kb on + strand, within Xcc-8004.4777.1at 4545.741 kb on + strand, within Xcc-8004.4777.1at 4545.742 kb on - strand, within Xcc-8004.4777.1at 4545.742 kb on - strand, within Xcc-8004.4777.1at 4545.742 kb on - strand, within Xcc-8004.4777.1at 4545.742 kb on - strand, within Xcc-8004.4777.1at 4545.742 kb on - strand, within Xcc-8004.4777.1at 4545.747 kb on + strand, within Xcc-8004.4777.1at 4545.747 kb on + strand, within Xcc-8004.4777.1at 4545.747 kb on + strand, within Xcc-8004.4777.1at 4545.747 kb on + strand, within Xcc-8004.4777.1at 4545.747 kb on + strand, within Xcc-8004.4777.1at 4545.747 kb on + strand, within Xcc-8004.4777.1at 4545.747 kb on + strand, within Xcc-8004.4777.1at 4545.747 kb on + strand, within Xcc-8004.4777.1at 4545.747 kb on + strand, within Xcc-8004.4777.1at 4545.748 kb on - strand, within Xcc-8004.4777.1at 4545.748 kb on - strand, within Xcc-8004.4777.1at 4545.748 kb on - strand, within Xcc-8004.4777.1at 4545.748 kb on - strand, within Xcc-8004.4777.1at 4545.748 kb on - strand, within Xcc-8004.4777.1at 4545.748 kb on - strand, within Xcc-8004.4777.1at 4546.020 kb on + strand, within Xcc-8004.4777.1at 4546.020 kb on + strand, within Xcc-8004.4777.1at 4546.020 kb on + strand, within Xcc-8004.4777.1at 4546.020 kb on + strand, within Xcc-8004.4777.1at 4546.020 kb on + strand, within Xcc-8004.4777.1at 4546.020 kb on + strand, within Xcc-8004.4777.1at 4546.020 kb on + strand, within Xcc-8004.4777.1at 4546.021 kb on - strand, within Xcc-8004.4777.1at 4546.021 kb on - strand, within Xcc-8004.4777.1at 4546.021 kb on - strand, within Xcc-8004.4777.1at 4546.021 kb on - strand, within Xcc-8004.4777.1at 4546.021 kb on - strand, within Xcc-8004.4777.1at 4546.021 kb on - strand, within Xcc-8004.4777.1at 4546.021 kb on - strand, within Xcc-8004.4777.1at 4546.021 kb on - strand, within Xcc-8004.4777.1at 4546.021 kb on - strand, within Xcc-8004.4777.1at 4546.098 kb on + strand, within Xcc-8004.4777.1at 4546.098 kb on + strand, within Xcc-8004.4777.1at 4546.098 kb on + strand, within Xcc-8004.4777.1at 4546.098 kb on + strand, within Xcc-8004.4777.1at 4546.098 kb on + strand, within Xcc-8004.4777.1at 4546.287 kb on + strand, within Xcc-8004.4777.1at 4546.287 kb on + strand, within Xcc-8004.4777.1at 4546.288 kb on - strand, within Xcc-8004.4777.1at 4546.288 kb on - strand, within Xcc-8004.4777.1at 4546.288 kb on - strand, within Xcc-8004.4777.1at 4546.359 kb on + strand, within Xcc-8004.4777.1at 4546.374 kb on + strand, within Xcc-8004.4777.1at 4546.374 kb on + strand, within Xcc-8004.4777.1at 4546.374 kb on + strand, within Xcc-8004.4777.1at 4546.374 kb on + strand, within Xcc-8004.4777.1at 4546.375 kb on - strand, within Xcc-8004.4777.1at 4546.642 kb on + strandat 4546.643 kb on - strandat 4546.643 kb on - strandat 4546.730 kb on + strandat 4546.730 kb on + strandat 4546.730 kb on + strandat 4546.731 kb on - strandat 4547.071 kb on + strand, within Xcc-8004.4778.1at 4547.075 kb on + strand, within Xcc-8004.4778.1at 4547.315 kb on + strandat 4547.316 kb on - strandat 4547.361 kb on + strandat 4547.361 kb on + strandat 4547.361 kb on + strandat 4547.407 kb on + strandat 4547.407 kb on + strandat 4547.407 kb on + strandat 4547.407 kb on + strandat 4547.407 kb on + strandat 4547.407 kb on + strandat 4547.420 kb on + strandat 4547.420 kb on + strandat 4547.420 kb on + strandat 4547.420 kb on + strandat 4547.420 kb on + strandat 4547.420 kb on + strandat 4547.468 kb on + strandat 4547.468 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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4,544,043 - Xcc-8004.4775.1 0.78 -0.4
4,544,043 - Xcc-8004.4775.1 0.78 -2.1
4,544,043 - Xcc-8004.4775.1 0.78 -3.1
4,544,673 + Xcc-8004.4776.1 0.62 -0.7
4,544,673 + Xcc-8004.4776.1 0.62 -0.5
4,544,673 + Xcc-8004.4776.1 0.62 +1.5
4,544,673 + Xcc-8004.4776.1 0.62 +2.3
4,544,673 + Xcc-8004.4776.1 0.62 +0.1
4,544,895 + -1.4
4,544,895 + +0.7
4,544,895 + -0.0
4,544,896 - -2.8
4,544,896 - +1.8
4,544,896 - +2.4
4,544,896 - -1.5
4,544,941 + +1.6
4,544,942 - -0.9
4,545,004 + +1.7
4,545,004 + +1.0
4,545,004 + -1.6
4,545,005 - +2.8
4,545,005 - -2.0
4,545,005 - -0.1
4,545,093 - -1.9
4,545,572 - Xcc-8004.4777.1 0.32 -3.0
4,545,606 + Xcc-8004.4777.1 0.34 +1.8
4,545,606 + Xcc-8004.4777.1 0.34 -2.5
4,545,606 + Xcc-8004.4777.1 0.34 -2.5
4,545,606 + Xcc-8004.4777.1 0.34 -1.3
4,545,606 + Xcc-8004.4777.1 0.34 +0.6
4,545,607 - Xcc-8004.4777.1 0.34 -1.6
4,545,607 - Xcc-8004.4777.1 0.34 -0.3
4,545,607 - Xcc-8004.4777.1 0.34 -0.3
4,545,607 - Xcc-8004.4777.1 0.34 +2.6
4,545,607 - Xcc-8004.4777.1 0.34 -1.2
4,545,607 - Xcc-8004.4777.1 0.34 +0.3
4,545,637 - Xcc-8004.4777.1 0.36 +0.6
4,545,708 + Xcc-8004.4777.1 0.40 -1.3
4,545,708 + Xcc-8004.4777.1 0.40 +2.0
4,545,708 + Xcc-8004.4777.1 0.40 -1.2
4,545,708 + Xcc-8004.4777.1 0.40 +0.8
4,545,708 + Xcc-8004.4777.1 0.40 +0.8
4,545,709 - Xcc-8004.4777.1 0.40 -0.7
4,545,709 - Xcc-8004.4777.1 0.40 -2.7
4,545,709 - Xcc-8004.4777.1 0.40 -2.5
4,545,709 - Xcc-8004.4777.1 0.40 +0.3
4,545,709 - Xcc-8004.4777.1 0.40 -1.4
4,545,709 - Xcc-8004.4777.1 0.40 -3.3
4,545,709 - Xcc-8004.4777.1 0.40 +1.4
4,545,709 - Xcc-8004.4777.1 0.40 +1.4
4,545,709 - Xcc-8004.4777.1 0.40 -0.9
4,545,709 - Xcc-8004.4777.1 0.40 +1.3
4,545,709 - Xcc-8004.4777.1 0.40 -1.2
4,545,709 - Xcc-8004.4777.1 0.40 -1.6
4,545,735 + Xcc-8004.4777.1 0.41 +1.5
4,545,735 + Xcc-8004.4777.1 0.41 -2.5
4,545,741 + Xcc-8004.4777.1 0.41 -0.3
4,545,741 + Xcc-8004.4777.1 0.41 +1.3
4,545,741 + Xcc-8004.4777.1 0.41 +0.1
4,545,742 - Xcc-8004.4777.1 0.41 -2.4
4,545,742 - Xcc-8004.4777.1 0.41 -0.9
4,545,742 - Xcc-8004.4777.1 0.41 -2.5
4,545,742 - Xcc-8004.4777.1 0.41 -1.9
4,545,742 - Xcc-8004.4777.1 0.41 -1.7
4,545,747 + Xcc-8004.4777.1 0.42 -0.5
4,545,747 + Xcc-8004.4777.1 0.42 -2.0
4,545,747 + Xcc-8004.4777.1 0.42 -0.9
4,545,747 + Xcc-8004.4777.1 0.42 +0.3
4,545,747 + Xcc-8004.4777.1 0.42 +0.2
4,545,747 + Xcc-8004.4777.1 0.42 +1.3
4,545,747 + Xcc-8004.4777.1 0.42 +1.1
4,545,747 + Xcc-8004.4777.1 0.42 -2.5
4,545,747 + Xcc-8004.4777.1 0.42 -0.5
4,545,748 - Xcc-8004.4777.1 0.42 -2.0
4,545,748 - Xcc-8004.4777.1 0.42 +1.7
4,545,748 - Xcc-8004.4777.1 0.42 -0.3
4,545,748 - Xcc-8004.4777.1 0.42 +0.6
4,545,748 - Xcc-8004.4777.1 0.42 -2.1
4,545,748 - Xcc-8004.4777.1 0.42 +1.4
4,546,020 + Xcc-8004.4777.1 0.57 +0.3
4,546,020 + Xcc-8004.4777.1 0.57 -1.6
4,546,020 + Xcc-8004.4777.1 0.57 +1.8
4,546,020 + Xcc-8004.4777.1 0.57 +0.9
4,546,020 + Xcc-8004.4777.1 0.57 -1.3
4,546,020 + Xcc-8004.4777.1 0.57 +2.7
4,546,020 + Xcc-8004.4777.1 0.57 -0.2
4,546,021 - Xcc-8004.4777.1 0.57 +2.3
4,546,021 - Xcc-8004.4777.1 0.57 -0.4
4,546,021 - Xcc-8004.4777.1 0.57 -2.3
4,546,021 - Xcc-8004.4777.1 0.57 -2.5
4,546,021 - Xcc-8004.4777.1 0.57 -0.0
4,546,021 - Xcc-8004.4777.1 0.57 -1.0
4,546,021 - Xcc-8004.4777.1 0.57 -1.6
4,546,021 - Xcc-8004.4777.1 0.57 -3.0
4,546,021 - Xcc-8004.4777.1 0.57 -0.3
4,546,098 + Xcc-8004.4777.1 0.62 -1.9
4,546,098 + Xcc-8004.4777.1 0.62 -0.8
4,546,098 + Xcc-8004.4777.1 0.62 +0.4
4,546,098 + Xcc-8004.4777.1 0.62 +1.2
4,546,098 + Xcc-8004.4777.1 0.62 -0.8
4,546,287 + Xcc-8004.4777.1 0.72 +2.3
4,546,287 + Xcc-8004.4777.1 0.72 -1.5
4,546,288 - Xcc-8004.4777.1 0.72 -0.9
4,546,288 - Xcc-8004.4777.1 0.72 -2.0
4,546,288 - Xcc-8004.4777.1 0.72 +2.1
4,546,359 + Xcc-8004.4777.1 0.76 -1.8
4,546,374 + Xcc-8004.4777.1 0.77 -1.9
4,546,374 + Xcc-8004.4777.1 0.77 -0.9
4,546,374 + Xcc-8004.4777.1 0.77 +1.6
4,546,374 + Xcc-8004.4777.1 0.77 -1.0
4,546,375 - Xcc-8004.4777.1 0.77 +0.7
4,546,642 + -2.0
4,546,643 - +0.7
4,546,643 - +2.3
4,546,730 + -3.0
4,546,730 + +0.7
4,546,730 + -0.1
4,546,731 - -1.7
4,547,071 + Xcc-8004.4778.1 0.42 +1.8
4,547,075 + Xcc-8004.4778.1 0.43 -0.5
4,547,315 + -0.8
4,547,316 - -2.4
4,547,361 + -1.2
4,547,361 + +1.7
4,547,361 + -0.8
4,547,407 + +0.9
4,547,407 + +2.1
4,547,407 + +2.6
4,547,407 + -2.1
4,547,407 + +1.0
4,547,407 + -2.6
4,547,420 + +1.6
4,547,420 + -1.1
4,547,420 + +1.2
4,547,420 + -1.1
4,547,420 + +1.0
4,547,420 + -2.0
4,547,468 + +4.0
4,547,468 + +2.3

Or see this region's nucleotide sequence