Experiment: Xylemvessel barcodes T0L1P3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4746.1 and Xcc-8004.4747.1 are separated by 43 nucleotides Xcc-8004.4747.1 and Xcc-8004.4748.1 are separated by 40 nucleotides Xcc-8004.4748.1 and Xcc-8004.4750.1 are separated by 26 nucleotides
Xcc-8004.4746.1: Xcc-8004.4746.1 - Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake, at 4,516,740 to 4,517,876
Xcc-8004.4746.1
Xcc-8004.4747.1: Xcc-8004.4747.1 - Protein of unknown function Smg, at 4,517,920 to 4,518,393
Xcc-8004.4747.1
Xcc-8004.4748.1: Xcc-8004.4748.1 - fimbrial protein, at 4,518,434 to 4,519,174
Xcc-8004.4748.1
Xcc-8004.4750.1: Xcc-8004.4750.1 - FIG01210152: hypothetical protein, at 4,519,201 to 4,520,346
Xcc-8004.4750.1
Position (kb) 4517
4518
4519 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4517.001 kb on + strand, within Xcc-8004.4746.1 at 4517.001 kb on + strand, within Xcc-8004.4746.1 at 4517.002 kb on - strand, within Xcc-8004.4746.1 at 4517.002 kb on - strand, within Xcc-8004.4746.1 at 4517.021 kb on + strand, within Xcc-8004.4746.1 at 4517.022 kb on - strand, within Xcc-8004.4746.1 at 4517.283 kb on + strand, within Xcc-8004.4746.1 at 4517.346 kb on + strand, within Xcc-8004.4746.1 at 4517.346 kb on + strand, within Xcc-8004.4746.1 at 4517.347 kb on - strand, within Xcc-8004.4746.1 at 4517.347 kb on - strand, within Xcc-8004.4746.1 at 4517.347 kb on - strand, within Xcc-8004.4746.1 at 4517.347 kb on - strand, within Xcc-8004.4746.1 at 4517.347 kb on - strand, within Xcc-8004.4746.1 at 4517.347 kb on - strand, within Xcc-8004.4746.1 at 4517.522 kb on + strand, within Xcc-8004.4746.1 at 4517.522 kb on + strand, within Xcc-8004.4746.1 at 4517.523 kb on - strand, within Xcc-8004.4746.1 at 4517.523 kb on - strand, within Xcc-8004.4746.1 at 4517.605 kb on + strand, within Xcc-8004.4746.1 at 4517.605 kb on + strand, within Xcc-8004.4746.1 at 4517.605 kb on + strand, within Xcc-8004.4746.1 at 4517.606 kb on - strand, within Xcc-8004.4746.1 at 4517.606 kb on - strand, within Xcc-8004.4746.1 at 4517.715 kb on + strand, within Xcc-8004.4746.1 at 4517.716 kb on - strand, within Xcc-8004.4746.1 at 4517.716 kb on - strand, within Xcc-8004.4746.1 at 4517.859 kb on + strand at 4517.859 kb on + strand at 4517.859 kb on + strand at 4517.859 kb on + strand at 4517.859 kb on + strand at 4517.859 kb on + strand at 4517.860 kb on - strand at 4517.860 kb on - strand at 4517.862 kb on - strand at 4517.862 kb on - strand at 4517.875 kb on - strand at 4517.942 kb on + strand at 4517.942 kb on + strand at 4517.942 kb on + strand at 4517.942 kb on + strand at 4517.942 kb on + strand at 4517.942 kb on + strand at 4517.942 kb on + strand at 4517.942 kb on + strand at 4517.942 kb on + strand at 4517.942 kb on + strand at 4517.942 kb on + strand at 4517.942 kb on + strand at 4517.942 kb on + strand at 4517.942 kb on + strand at 4517.942 kb on + strand at 4517.943 kb on - strand at 4517.943 kb on - strand at 4517.943 kb on - strand at 4517.943 kb on - strand at 4517.943 kb on - strand at 4517.943 kb on - strand at 4517.943 kb on - strand at 4517.943 kb on - strand at 4517.943 kb on - strand at 4517.943 kb on - strand at 4517.943 kb on - strand at 4517.943 kb on - strand at 4517.943 kb on - strand at 4517.943 kb on - strand at 4517.943 kb on - strand at 4517.943 kb on - strand at 4517.943 kb on - strand at 4517.943 kb on - strand at 4517.943 kb on - strand at 4517.950 kb on + strand at 4517.950 kb on + strand at 4517.950 kb on + strand at 4517.950 kb on + strand at 4517.950 kb on + strand at 4517.950 kb on + strand at 4517.950 kb on + strand at 4517.950 kb on + strand at 4517.950 kb on + strand at 4517.950 kb on + strand at 4517.951 kb on - strand at 4517.951 kb on - strand at 4517.951 kb on - strand at 4517.951 kb on - strand at 4517.951 kb on - strand at 4517.965 kb on + strand at 4517.965 kb on + strand at 4517.965 kb on + strand at 4517.965 kb on + strand at 4517.965 kb on + strand at 4517.966 kb on - strand at 4517.966 kb on - strand at 4517.966 kb on - strand at 4517.966 kb on - strand at 4517.966 kb on - strand at 4517.966 kb on - strand at 4517.966 kb on - strand at 4517.966 kb on - strand at 4518.055 kb on - strand, within Xcc-8004.4747.1 at 4518.055 kb on - strand, within Xcc-8004.4747.1 at 4518.055 kb on - strand, within Xcc-8004.4747.1 at 4518.055 kb on - strand, within Xcc-8004.4747.1 at 4518.136 kb on + strand, within Xcc-8004.4747.1 at 4518.136 kb on + strand, within Xcc-8004.4747.1 at 4518.136 kb on + strand, within Xcc-8004.4747.1 at 4518.136 kb on + strand, within Xcc-8004.4747.1 at 4518.136 kb on + strand, within Xcc-8004.4747.1 at 4518.136 kb on + strand, within Xcc-8004.4747.1 at 4518.136 kb on + strand, within Xcc-8004.4747.1 at 4518.136 kb on + strand, within Xcc-8004.4747.1 at 4518.136 kb on + strand, within Xcc-8004.4747.1 at 4518.137 kb on - strand, within Xcc-8004.4747.1 at 4518.137 kb on - strand, within Xcc-8004.4747.1 at 4518.137 kb on - strand, within Xcc-8004.4747.1 at 4518.137 kb on - strand, within Xcc-8004.4747.1 at 4518.137 kb on - strand, within Xcc-8004.4747.1 at 4518.137 kb on - strand, within Xcc-8004.4747.1 at 4518.340 kb on + strand, within Xcc-8004.4747.1 at 4518.340 kb on + strand, within Xcc-8004.4747.1 at 4518.341 kb on - strand, within Xcc-8004.4747.1 at 4518.341 kb on - strand, within Xcc-8004.4747.1 at 4518.341 kb on - strand, within Xcc-8004.4747.1 at 4518.341 kb on - strand, within Xcc-8004.4747.1 at 4518.386 kb on + strand at 4518.386 kb on + strand at 4518.387 kb on - strand at 4518.387 kb on - strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.449 kb on + strand at 4518.449 kb on + strand at 4518.449 kb on + strand at 4518.449 kb on + strand at 4518.449 kb on + strand at 4518.449 kb on + strand at 4518.450 kb on - strand at 4518.509 kb on + strand, within Xcc-8004.4748.1 at 4518.509 kb on + strand, within Xcc-8004.4748.1 at 4518.510 kb on - strand, within Xcc-8004.4748.1 at 4518.510 kb on - strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.721 kb on + strand, within Xcc-8004.4748.1 at 4518.721 kb on + strand, within Xcc-8004.4748.1 at 4518.722 kb on - strand, within Xcc-8004.4748.1 at 4518.834 kb on - strand, within Xcc-8004.4748.1 at 4518.834 kb on - strand, within Xcc-8004.4748.1 at 4518.834 kb on - strand, within Xcc-8004.4748.1 at 4518.842 kb on + strand, within Xcc-8004.4748.1 at 4518.842 kb on + strand, within Xcc-8004.4748.1 at 4518.842 kb on + strand, within Xcc-8004.4748.1 at 4518.842 kb on + strand, within Xcc-8004.4748.1 at 4518.843 kb on - strand, within Xcc-8004.4748.1 at 4518.843 kb on - strand, within Xcc-8004.4748.1 at 4518.843 kb on - strand, within Xcc-8004.4748.1 at 4518.843 kb on - strand, within Xcc-8004.4748.1 at 4518.843 kb on - strand, within Xcc-8004.4748.1 at 4518.891 kb on + strand, within Xcc-8004.4748.1 at 4518.892 kb on - strand, within Xcc-8004.4748.1 at 4518.892 kb on - strand, within Xcc-8004.4748.1 at 4518.974 kb on + strand, within Xcc-8004.4748.1 at 4518.975 kb on - strand, within Xcc-8004.4748.1 at 4518.975 kb on - strand, within Xcc-8004.4748.1 at 4519.173 kb on - strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.216 kb on + strand at 4519.216 kb on + strand at 4519.216 kb on + strand at 4519.216 kb on + strand at 4519.216 kb on + strand at 4519.216 kb on + strand at 4519.216 kb on + strand at 4519.217 kb on - strand at 4519.217 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3 remove 4,517,001 + Xcc-8004.4746.1 0.23 +2.0 4,517,001 + Xcc-8004.4746.1 0.23 -0.0 4,517,002 - Xcc-8004.4746.1 0.23 +1.2 4,517,002 - Xcc-8004.4746.1 0.23 +2.2 4,517,021 + Xcc-8004.4746.1 0.25 +0.9 4,517,022 - Xcc-8004.4746.1 0.25 +0.3 4,517,283 + Xcc-8004.4746.1 0.48 +1.3 4,517,346 + Xcc-8004.4746.1 0.53 +1.1 4,517,346 + Xcc-8004.4746.1 0.53 +0.7 4,517,347 - Xcc-8004.4746.1 0.53 +0.3 4,517,347 - Xcc-8004.4746.1 0.53 +0.2 4,517,347 - Xcc-8004.4746.1 0.53 -3.3 4,517,347 - Xcc-8004.4746.1 0.53 -0.6 4,517,347 - Xcc-8004.4746.1 0.53 +2.0 4,517,347 - Xcc-8004.4746.1 0.53 +0.1 4,517,522 + Xcc-8004.4746.1 0.69 +0.8 4,517,522 + Xcc-8004.4746.1 0.69 +0.9 4,517,523 - Xcc-8004.4746.1 0.69 +0.5 4,517,523 - Xcc-8004.4746.1 0.69 -1.9 4,517,605 + Xcc-8004.4746.1 0.76 +2.5 4,517,605 + Xcc-8004.4746.1 0.76 -1.3 4,517,605 + Xcc-8004.4746.1 0.76 -1.7 4,517,606 - Xcc-8004.4746.1 0.76 +0.8 4,517,606 - Xcc-8004.4746.1 0.76 -1.8 4,517,715 + Xcc-8004.4746.1 0.86 +0.9 4,517,716 - Xcc-8004.4746.1 0.86 -0.6 4,517,716 - Xcc-8004.4746.1 0.86 +1.4 4,517,859 + +1.6 4,517,859 + -2.0 4,517,859 + +0.2 4,517,859 + -2.9 4,517,859 + -1.3 4,517,859 + +1.2 4,517,860 - -1.1 4,517,860 - -1.0 4,517,862 - -1.9 4,517,862 - +0.3 4,517,875 - +0.3 4,517,942 + -1.4 4,517,942 + -0.8 4,517,942 + -0.6 4,517,942 + -1.7 4,517,942 + -1.4 4,517,942 + +0.4 4,517,942 + +0.8 4,517,942 + +1.4 4,517,942 + +0.9 4,517,942 + -0.1 4,517,942 + +1.3 4,517,942 + -1.8 4,517,942 + +0.4 4,517,942 + +1.8 4,517,942 + -0.3 4,517,943 - +1.9 4,517,943 - -0.4 4,517,943 - +0.9 4,517,943 - -1.9 4,517,943 - -0.1 4,517,943 - -0.0 4,517,943 - -1.4 4,517,943 - -2.6 4,517,943 - -0.9 4,517,943 - +2.9 4,517,943 - -0.1 4,517,943 - +2.9 4,517,943 - -2.1 4,517,943 - -0.1 4,517,943 - +1.5 4,517,943 - +0.8 4,517,943 - -2.4 4,517,943 - -0.1 4,517,943 - -1.2 4,517,950 + -2.0 4,517,950 + +1.8 4,517,950 + -0.2 4,517,950 + +0.8 4,517,950 + +1.5 4,517,950 + -2.4 4,517,950 + -1.9 4,517,950 + -1.9 4,517,950 + -0.4 4,517,950 + +1.0 4,517,951 - +2.8 4,517,951 - -0.9 4,517,951 - +0.9 4,517,951 - +3.5 4,517,951 - -1.2 4,517,965 + +0.3 4,517,965 + -2.7 4,517,965 + -2.9 4,517,965 + -1.7 4,517,965 + -2.4 4,517,966 - -1.1 4,517,966 - -0.1 4,517,966 - +0.3 4,517,966 - +0.2 4,517,966 - -1.3 4,517,966 - +0.9 4,517,966 - +3.0 4,517,966 - -1.0 4,518,055 - Xcc-8004.4747.1 0.28 -1.4 4,518,055 - Xcc-8004.4747.1 0.28 +1.3 4,518,055 - Xcc-8004.4747.1 0.28 -1.6 4,518,055 - Xcc-8004.4747.1 0.28 +4.2 4,518,136 + Xcc-8004.4747.1 0.46 -0.4 4,518,136 + Xcc-8004.4747.1 0.46 +0.7 4,518,136 + Xcc-8004.4747.1 0.46 -0.8 4,518,136 + Xcc-8004.4747.1 0.46 -2.7 4,518,136 + Xcc-8004.4747.1 0.46 +0.8 4,518,136 + Xcc-8004.4747.1 0.46 +1.7 4,518,136 + Xcc-8004.4747.1 0.46 -0.5 4,518,136 + Xcc-8004.4747.1 0.46 -1.7 4,518,136 + Xcc-8004.4747.1 0.46 +1.6 4,518,137 - Xcc-8004.4747.1 0.46 -2.0 4,518,137 - Xcc-8004.4747.1 0.46 +0.4 4,518,137 - Xcc-8004.4747.1 0.46 +0.3 4,518,137 - Xcc-8004.4747.1 0.46 -1.8 4,518,137 - Xcc-8004.4747.1 0.46 +0.2 4,518,137 - Xcc-8004.4747.1 0.46 -1.4 4,518,340 + Xcc-8004.4747.1 0.89 +0.9 4,518,340 + Xcc-8004.4747.1 0.89 -2.5 4,518,341 - Xcc-8004.4747.1 0.89 -0.6 4,518,341 - Xcc-8004.4747.1 0.89 -1.4 4,518,341 - Xcc-8004.4747.1 0.89 +1.3 4,518,341 - Xcc-8004.4747.1 0.89 -0.1 4,518,386 + +1.1 4,518,386 + -0.2 4,518,387 - +0.6 4,518,387 - -1.6 4,518,446 + -1.7 4,518,446 + +0.2 4,518,446 + -0.3 4,518,446 + +2.3 4,518,446 + -2.3 4,518,446 + +0.5 4,518,446 + -2.7 4,518,446 + -1.6 4,518,446 + +0.7 4,518,447 - +0.1 4,518,447 - -3.2 4,518,447 - -2.7 4,518,447 - -2.8 4,518,447 - +1.3 4,518,447 - +1.0 4,518,447 - -1.3 4,518,447 - -0.6 4,518,447 - +0.9 4,518,447 - -0.6 4,518,447 - -1.9 4,518,447 - +1.0 4,518,447 - +0.5 4,518,447 - +1.4 4,518,449 + -1.4 4,518,449 + +1.5 4,518,449 + -3.4 4,518,449 + -1.7 4,518,449 + -0.6 4,518,449 + +1.2 4,518,450 - +1.8 4,518,509 + Xcc-8004.4748.1 0.10 -3.5 4,518,509 + Xcc-8004.4748.1 0.10 -1.2 4,518,510 - Xcc-8004.4748.1 0.10 +1.7 4,518,510 - Xcc-8004.4748.1 0.10 -0.1 4,518,556 + Xcc-8004.4748.1 0.16 +0.2 4,518,556 + Xcc-8004.4748.1 0.16 -1.6 4,518,556 + Xcc-8004.4748.1 0.16 -1.7 4,518,556 + Xcc-8004.4748.1 0.16 +1.8 4,518,556 + Xcc-8004.4748.1 0.16 -1.3 4,518,556 + Xcc-8004.4748.1 0.16 -0.5 4,518,556 + Xcc-8004.4748.1 0.16 +1.6 4,518,556 + Xcc-8004.4748.1 0.16 -3.4 4,518,556 + Xcc-8004.4748.1 0.16 +2.3 4,518,556 + Xcc-8004.4748.1 0.16 -0.3 4,518,557 - Xcc-8004.4748.1 0.17 +1.6 4,518,557 - Xcc-8004.4748.1 0.17 -0.1 4,518,557 - Xcc-8004.4748.1 0.17 -0.7 4,518,557 - Xcc-8004.4748.1 0.17 -0.7 4,518,557 - Xcc-8004.4748.1 0.17 -1.7 4,518,557 - Xcc-8004.4748.1 0.17 +3.1 4,518,557 - Xcc-8004.4748.1 0.17 -0.8 4,518,721 + Xcc-8004.4748.1 0.39 +0.8 4,518,721 + Xcc-8004.4748.1 0.39 -2.1 4,518,722 - Xcc-8004.4748.1 0.39 +0.5 4,518,834 - Xcc-8004.4748.1 0.54 +1.4 4,518,834 - Xcc-8004.4748.1 0.54 -1.8 4,518,834 - Xcc-8004.4748.1 0.54 +1.4 4,518,842 + Xcc-8004.4748.1 0.55 +4.1 4,518,842 + Xcc-8004.4748.1 0.55 +0.7 4,518,842 + Xcc-8004.4748.1 0.55 -0.7 4,518,842 + Xcc-8004.4748.1 0.55 -0.9 4,518,843 - Xcc-8004.4748.1 0.55 +1.8 4,518,843 - Xcc-8004.4748.1 0.55 +0.0 4,518,843 - Xcc-8004.4748.1 0.55 -1.8 4,518,843 - Xcc-8004.4748.1 0.55 -0.9 4,518,843 - Xcc-8004.4748.1 0.55 -0.6 4,518,891 + Xcc-8004.4748.1 0.62 -1.7 4,518,892 - Xcc-8004.4748.1 0.62 -3.1 4,518,892 - Xcc-8004.4748.1 0.62 -1.4 4,518,974 + Xcc-8004.4748.1 0.73 -1.4 4,518,975 - Xcc-8004.4748.1 0.73 +0.4 4,518,975 - Xcc-8004.4748.1 0.73 -0.7 4,519,173 - -1.6 4,519,200 + -1.7 4,519,200 + +0.9 4,519,200 + -1.3 4,519,200 + +0.7 4,519,200 + -2.7 4,519,200 + -0.8 4,519,200 + -0.9 4,519,200 + -1.8 4,519,201 - -0.1 4,519,201 - +0.2 4,519,201 - -0.6 4,519,201 - +0.2 4,519,201 - +0.2 4,519,201 - -0.7 4,519,201 - -1.1 4,519,201 - -2.4 4,519,213 + +1.6 4,519,213 + +0.2 4,519,213 + -1.6 4,519,213 + -2.0 4,519,213 + +0.3 4,519,213 + +1.3 4,519,213 + +0.3 4,519,213 + +2.3 4,519,214 - +0.3 4,519,214 - -0.7 4,519,214 - -2.3 4,519,214 - -0.2 4,519,214 - +1.0 4,519,214 - +1.2 4,519,214 - -1.1 4,519,214 - -2.3 4,519,216 + +2.4 4,519,216 + -2.1 4,519,216 + +0.7 4,519,216 + +0.0 4,519,216 + -3.2 4,519,216 + +0.3 4,519,216 + -2.6 4,519,217 - +1.2 4,519,217 - -0.2
Or see this region's nucleotide sequence