Experiment: Xylemvessel barcodes T0L1P3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4608.1 and Xcc-8004.4609.1 overlap by 2 nucleotides Xcc-8004.4609.1 and Xcc-8004.4610.1 are separated by 204 nucleotides Xcc-8004.4610.1 and Xcc-8004.4611.1 overlap by 4 nucleotides
Xcc-8004.4608.1: Xcc-8004.4608.1 - N-acetylglucosamine-regulated TonB-dependent outer membrane receptor, at 4,392,482 to 4,395,334
Xcc-8004.4608.1
Xcc-8004.4609.1: Xcc-8004.4609.1 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 4,395,333 to 4,396,139
Xcc-8004.4609.1
Xcc-8004.4610.1: Xcc-8004.4610.1 - hypothetical protein, at 4,396,344 to 4,397,021
Xcc-8004.4610.1
Xcc-8004.4611.1: Xcc-8004.4611.1 - Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70), at 4,397,018 to 4,397,731
Xcc-8004.4611.1
Position (kb) 4395
4396
4397 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4394.335 kb on - strand, within Xcc-8004.4608.1 at 4394.335 kb on - strand, within Xcc-8004.4608.1 at 4394.335 kb on - strand, within Xcc-8004.4608.1 at 4394.335 kb on - strand, within Xcc-8004.4608.1 at 4394.388 kb on + strand, within Xcc-8004.4608.1 at 4394.388 kb on + strand, within Xcc-8004.4608.1 at 4394.388 kb on + strand, within Xcc-8004.4608.1 at 4394.389 kb on - strand, within Xcc-8004.4608.1 at 4394.389 kb on - strand, within Xcc-8004.4608.1 at 4394.389 kb on - strand, within Xcc-8004.4608.1 at 4394.401 kb on - strand, within Xcc-8004.4608.1 at 4394.401 kb on - strand, within Xcc-8004.4608.1 at 4394.494 kb on - strand, within Xcc-8004.4608.1 at 4394.494 kb on - strand, within Xcc-8004.4608.1 at 4394.494 kb on - strand, within Xcc-8004.4608.1 at 4394.494 kb on - strand, within Xcc-8004.4608.1 at 4394.811 kb on + strand, within Xcc-8004.4608.1 at 4394.811 kb on + strand, within Xcc-8004.4608.1 at 4394.811 kb on + strand, within Xcc-8004.4608.1 at 4394.811 kb on + strand, within Xcc-8004.4608.1 at 4394.811 kb on + strand, within Xcc-8004.4608.1 at 4394.811 kb on + strand, within Xcc-8004.4608.1 at 4394.811 kb on + strand, within Xcc-8004.4608.1 at 4394.811 kb on + strand, within Xcc-8004.4608.1 at 4394.812 kb on - strand, within Xcc-8004.4608.1 at 4394.812 kb on - strand, within Xcc-8004.4608.1 at 4394.812 kb on - strand, within Xcc-8004.4608.1 at 4394.812 kb on - strand, within Xcc-8004.4608.1 at 4394.937 kb on + strand, within Xcc-8004.4608.1 at 4394.937 kb on + strand, within Xcc-8004.4608.1 at 4394.937 kb on + strand, within Xcc-8004.4608.1 at 4394.976 kb on + strand, within Xcc-8004.4608.1 at 4394.976 kb on + strand, within Xcc-8004.4608.1 at 4394.976 kb on + strand, within Xcc-8004.4608.1 at 4394.976 kb on + strand, within Xcc-8004.4608.1 at 4394.976 kb on + strand, within Xcc-8004.4608.1 at 4394.977 kb on - strand, within Xcc-8004.4608.1 at 4394.977 kb on - strand, within Xcc-8004.4608.1 at 4394.977 kb on - strand, within Xcc-8004.4608.1 at 4394.977 kb on - strand, within Xcc-8004.4608.1 at 4394.977 kb on - strand, within Xcc-8004.4608.1 at 4394.977 kb on - strand, within Xcc-8004.4608.1 at 4394.977 kb on - strand, within Xcc-8004.4608.1 at 4394.988 kb on - strand, within Xcc-8004.4608.1 at 4395.025 kb on + strand, within Xcc-8004.4608.1 at 4395.026 kb on - strand, within Xcc-8004.4608.1 at 4395.026 kb on - strand, within Xcc-8004.4608.1 at 4395.211 kb on + strand at 4395.212 kb on - strand at 4395.295 kb on + strand at 4395.296 kb on - strand at 4395.296 kb on - strand at 4395.296 kb on - strand at 4395.653 kb on + strand, within Xcc-8004.4609.1 at 4395.831 kb on + strand, within Xcc-8004.4609.1 at 4395.831 kb on + strand, within Xcc-8004.4609.1 at 4395.831 kb on + strand, within Xcc-8004.4609.1 at 4395.831 kb on + strand, within Xcc-8004.4609.1 at 4395.832 kb on - strand, within Xcc-8004.4609.1 at 4395.932 kb on + strand, within Xcc-8004.4609.1 at 4396.048 kb on + strand, within Xcc-8004.4609.1 at 4396.048 kb on + strand, within Xcc-8004.4609.1 at 4396.048 kb on + strand, within Xcc-8004.4609.1 at 4396.048 kb on + strand, within Xcc-8004.4609.1 at 4396.049 kb on - strand, within Xcc-8004.4609.1 at 4396.049 kb on - strand, within Xcc-8004.4609.1 at 4396.049 kb on - strand, within Xcc-8004.4609.1 at 4396.049 kb on - strand, within Xcc-8004.4609.1 at 4396.049 kb on - strand, within Xcc-8004.4609.1 at 4396.050 kb on + strand, within Xcc-8004.4609.1 at 4396.050 kb on + strand, within Xcc-8004.4609.1 at 4396.050 kb on + strand, within Xcc-8004.4609.1 at 4396.051 kb on - strand, within Xcc-8004.4609.1 at 4396.051 kb on - strand, within Xcc-8004.4609.1 at 4396.051 kb on - strand, within Xcc-8004.4609.1 at 4396.051 kb on - strand, within Xcc-8004.4609.1 at 4396.131 kb on + strand at 4396.131 kb on + strand at 4396.131 kb on + strand at 4396.131 kb on + strand at 4396.131 kb on + strand at 4396.131 kb on + strand at 4396.131 kb on + strand at 4396.131 kb on + strand at 4396.132 kb on - strand at 4396.132 kb on - strand at 4396.132 kb on - strand at 4396.132 kb on - strand at 4396.132 kb on - strand at 4396.170 kb on + strand at 4396.170 kb on + strand at 4396.171 kb on - strand at 4396.171 kb on - strand at 4396.171 kb on - strand at 4396.171 kb on - strand at 4396.217 kb on + strand at 4396.218 kb on - strand at 4396.249 kb on + strand at 4396.249 kb on + strand at 4396.249 kb on + strand at 4396.249 kb on + strand at 4396.249 kb on + strand at 4396.249 kb on + strand at 4396.249 kb on + strand at 4396.250 kb on - strand at 4396.250 kb on - strand at 4396.250 kb on - strand at 4396.250 kb on - strand at 4396.250 kb on - strand at 4396.250 kb on - strand at 4396.250 kb on - strand at 4396.250 kb on - strand at 4396.264 kb on + strand at 4396.264 kb on + strand at 4396.264 kb on + strand at 4396.264 kb on + strand at 4396.265 kb on - strand at 4396.265 kb on - strand at 4396.288 kb on + strand at 4396.288 kb on + strand at 4396.288 kb on + strand at 4396.288 kb on + strand at 4396.288 kb on + strand at 4396.289 kb on - strand at 4396.289 kb on - strand at 4396.289 kb on - strand at 4396.337 kb on + strand at 4396.558 kb on + strand, within Xcc-8004.4610.1 at 4396.558 kb on + strand, within Xcc-8004.4610.1 at 4396.558 kb on + strand, within Xcc-8004.4610.1 at 4396.558 kb on + strand, within Xcc-8004.4610.1 at 4396.559 kb on - strand, within Xcc-8004.4610.1 at 4396.559 kb on - strand, within Xcc-8004.4610.1 at 4396.559 kb on - strand, within Xcc-8004.4610.1 at 4396.559 kb on - strand, within Xcc-8004.4610.1 at 4396.559 kb on - strand, within Xcc-8004.4610.1 at 4396.559 kb on - strand, within Xcc-8004.4610.1 at 4396.559 kb on - strand, within Xcc-8004.4610.1 at 4396.559 kb on - strand, within Xcc-8004.4610.1 at 4396.559 kb on - strand, within Xcc-8004.4610.1 at 4396.771 kb on + strand, within Xcc-8004.4610.1 at 4396.772 kb on - strand, within Xcc-8004.4610.1 at 4396.934 kb on + strand, within Xcc-8004.4610.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3 remove 4,394,335 - Xcc-8004.4608.1 0.65 +1.1 4,394,335 - Xcc-8004.4608.1 0.65 -0.7 4,394,335 - Xcc-8004.4608.1 0.65 -1.2 4,394,335 - Xcc-8004.4608.1 0.65 -1.8 4,394,388 + Xcc-8004.4608.1 0.67 -0.2 4,394,388 + Xcc-8004.4608.1 0.67 -1.5 4,394,388 + Xcc-8004.4608.1 0.67 +1.0 4,394,389 - Xcc-8004.4608.1 0.67 +1.3 4,394,389 - Xcc-8004.4608.1 0.67 +0.6 4,394,389 - Xcc-8004.4608.1 0.67 -1.0 4,394,401 - Xcc-8004.4608.1 0.67 +1.7 4,394,401 - Xcc-8004.4608.1 0.67 -1.6 4,394,494 - Xcc-8004.4608.1 0.71 +0.1 4,394,494 - Xcc-8004.4608.1 0.71 +0.7 4,394,494 - Xcc-8004.4608.1 0.71 -1.9 4,394,494 - Xcc-8004.4608.1 0.71 -2.5 4,394,811 + Xcc-8004.4608.1 0.82 -0.1 4,394,811 + Xcc-8004.4608.1 0.82 +0.5 4,394,811 + Xcc-8004.4608.1 0.82 +0.5 4,394,811 + Xcc-8004.4608.1 0.82 +0.2 4,394,811 + Xcc-8004.4608.1 0.82 +1.3 4,394,811 + Xcc-8004.4608.1 0.82 -3.2 4,394,811 + Xcc-8004.4608.1 0.82 +0.7 4,394,811 + Xcc-8004.4608.1 0.82 -2.5 4,394,812 - Xcc-8004.4608.1 0.82 -0.4 4,394,812 - Xcc-8004.4608.1 0.82 +0.2 4,394,812 - Xcc-8004.4608.1 0.82 -2.3 4,394,812 - Xcc-8004.4608.1 0.82 -0.6 4,394,937 + Xcc-8004.4608.1 0.86 +0.5 4,394,937 + Xcc-8004.4608.1 0.86 +1.4 4,394,937 + Xcc-8004.4608.1 0.86 +1.3 4,394,976 + Xcc-8004.4608.1 0.87 -1.4 4,394,976 + Xcc-8004.4608.1 0.87 -0.6 4,394,976 + Xcc-8004.4608.1 0.87 +0.9 4,394,976 + Xcc-8004.4608.1 0.87 -1.8 4,394,976 + Xcc-8004.4608.1 0.87 +1.3 4,394,977 - Xcc-8004.4608.1 0.87 -1.9 4,394,977 - Xcc-8004.4608.1 0.87 +0.8 4,394,977 - Xcc-8004.4608.1 0.87 +2.3 4,394,977 - Xcc-8004.4608.1 0.87 -1.4 4,394,977 - Xcc-8004.4608.1 0.87 -1.2 4,394,977 - Xcc-8004.4608.1 0.87 +3.2 4,394,977 - Xcc-8004.4608.1 0.87 -0.6 4,394,988 - Xcc-8004.4608.1 0.88 -1.2 4,395,025 + Xcc-8004.4608.1 0.89 -0.3 4,395,026 - Xcc-8004.4608.1 0.89 -1.4 4,395,026 - Xcc-8004.4608.1 0.89 -2.5 4,395,211 + -2.8 4,395,212 - -0.3 4,395,295 + -3.7 4,395,296 - +2.0 4,395,296 - +0.9 4,395,296 - -0.7 4,395,653 + Xcc-8004.4609.1 0.40 -1.2 4,395,831 + Xcc-8004.4609.1 0.62 +1.8 4,395,831 + Xcc-8004.4609.1 0.62 -2.8 4,395,831 + Xcc-8004.4609.1 0.62 -0.7 4,395,831 + Xcc-8004.4609.1 0.62 -1.4 4,395,832 - Xcc-8004.4609.1 0.62 +1.9 4,395,932 + Xcc-8004.4609.1 0.74 -1.0 4,396,048 + Xcc-8004.4609.1 0.89 +1.9 4,396,048 + Xcc-8004.4609.1 0.89 -0.6 4,396,048 + Xcc-8004.4609.1 0.89 +1.1 4,396,048 + Xcc-8004.4609.1 0.89 +1.8 4,396,049 - Xcc-8004.4609.1 0.89 +0.2 4,396,049 - Xcc-8004.4609.1 0.89 +0.3 4,396,049 - Xcc-8004.4609.1 0.89 -0.6 4,396,049 - Xcc-8004.4609.1 0.89 +2.0 4,396,049 - Xcc-8004.4609.1 0.89 +0.4 4,396,050 + Xcc-8004.4609.1 0.89 -1.1 4,396,050 + Xcc-8004.4609.1 0.89 +1.6 4,396,050 + Xcc-8004.4609.1 0.89 +1.4 4,396,051 - Xcc-8004.4609.1 0.89 -1.4 4,396,051 - Xcc-8004.4609.1 0.89 +3.5 4,396,051 - Xcc-8004.4609.1 0.89 -0.3 4,396,051 - Xcc-8004.4609.1 0.89 +1.0 4,396,131 + -0.9 4,396,131 + -0.7 4,396,131 + -0.5 4,396,131 + +0.8 4,396,131 + -2.6 4,396,131 + +2.3 4,396,131 + -1.6 4,396,131 + -1.6 4,396,132 - -0.6 4,396,132 - +1.8 4,396,132 - -1.1 4,396,132 - -2.6 4,396,132 - -0.5 4,396,170 + -0.9 4,396,170 + +1.4 4,396,171 - -2.2 4,396,171 - -1.6 4,396,171 - -0.8 4,396,171 - +0.6 4,396,217 + +0.3 4,396,218 - +2.7 4,396,249 + -3.0 4,396,249 + +1.7 4,396,249 + -0.9 4,396,249 + -0.4 4,396,249 + -1.6 4,396,249 + -3.3 4,396,249 + -0.8 4,396,250 - +1.3 4,396,250 - +1.0 4,396,250 - -1.6 4,396,250 - -0.8 4,396,250 - -0.9 4,396,250 - -0.7 4,396,250 - +1.2 4,396,250 - +1.9 4,396,264 + +0.9 4,396,264 + -2.3 4,396,264 + -2.7 4,396,264 + -2.4 4,396,265 - +2.1 4,396,265 - +1.8 4,396,288 + +1.0 4,396,288 + -0.4 4,396,288 + +0.1 4,396,288 + +3.1 4,396,288 + +2.0 4,396,289 - +2.0 4,396,289 - +1.7 4,396,289 - -2.8 4,396,337 + -2.0 4,396,558 + Xcc-8004.4610.1 0.32 +0.3 4,396,558 + Xcc-8004.4610.1 0.32 -1.9 4,396,558 + Xcc-8004.4610.1 0.32 -1.5 4,396,558 + Xcc-8004.4610.1 0.32 -0.7 4,396,559 - Xcc-8004.4610.1 0.32 +1.1 4,396,559 - Xcc-8004.4610.1 0.32 +1.7 4,396,559 - Xcc-8004.4610.1 0.32 +2.2 4,396,559 - Xcc-8004.4610.1 0.32 -2.4 4,396,559 - Xcc-8004.4610.1 0.32 -0.3 4,396,559 - Xcc-8004.4610.1 0.32 -1.8 4,396,559 - Xcc-8004.4610.1 0.32 -3.2 4,396,559 - Xcc-8004.4610.1 0.32 -2.5 4,396,559 - Xcc-8004.4610.1 0.32 +0.3 4,396,771 + Xcc-8004.4610.1 0.63 +2.2 4,396,772 - Xcc-8004.4610.1 0.63 -1.0 4,396,934 + Xcc-8004.4610.1 0.87 -1.4
Or see this region's nucleotide sequence