Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4605.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4604.1 and Xcc-8004.4605.1 are separated by 257 nucleotidesXcc-8004.4605.1 and Xcc-8004.4606.1 are separated by 55 nucleotidesXcc-8004.4606.1 and Xcc-8004.4607.1 are separated by 127 nucleotides Xcc-8004.4604.1: Xcc-8004.4604.1 - hypothetical protein, at 4,388,540 to 4,389,448 Xcc-8004.4604.1 Xcc-8004.4605.1: Xcc-8004.4605.1 - FIG001943: hypothetical protein YajQ, at 4,389,706 to 4,390,191 Xcc-8004.4605.1 Xcc-8004.4606.1: Xcc-8004.4606.1 - FIG01210755: hypothetical protein, at 4,390,247 to 4,390,921 Xcc-8004.4606.1 Xcc-8004.4607.1: Xcc-8004.4607.1 - Histidinol phosphatase and related hydrolases of the PHP family, at 4,391,049 to 4,392,482 Xcc-8004.4607.1 Position (kb) 4389 4390 4391Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4388.706 kb on + strand, within Xcc-8004.4604.1at 4388.706 kb on + strand, within Xcc-8004.4604.1at 4388.707 kb on - strand, within Xcc-8004.4604.1at 4388.949 kb on + strand, within Xcc-8004.4604.1at 4388.949 kb on + strand, within Xcc-8004.4604.1at 4388.949 kb on + strand, within Xcc-8004.4604.1at 4388.949 kb on + strand, within Xcc-8004.4604.1at 4388.950 kb on - strand, within Xcc-8004.4604.1at 4388.950 kb on - strand, within Xcc-8004.4604.1at 4389.129 kb on + strand, within Xcc-8004.4604.1at 4389.129 kb on + strand, within Xcc-8004.4604.1at 4389.129 kb on + strand, within Xcc-8004.4604.1at 4389.129 kb on + strand, within Xcc-8004.4604.1at 4389.130 kb on - strand, within Xcc-8004.4604.1at 4389.130 kb on - strand, within Xcc-8004.4604.1at 4389.138 kb on + strand, within Xcc-8004.4604.1at 4389.138 kb on + strand, within Xcc-8004.4604.1at 4389.138 kb on + strand, within Xcc-8004.4604.1at 4389.138 kb on + strand, within Xcc-8004.4604.1at 4389.171 kb on + strand, within Xcc-8004.4604.1at 4389.334 kb on - strand, within Xcc-8004.4604.1at 4389.578 kb on + strandat 4389.578 kb on + strandat 4389.578 kb on + strandat 4389.578 kb on + strandat 4389.579 kb on - strandat 4389.579 kb on - strandat 4389.579 kb on - strandat 4389.579 kb on - strandat 4389.579 kb on - strandat 4389.579 kb on - strandat 4389.579 kb on - strandat 4389.579 kb on - strandat 4389.671 kb on + strandat 4389.672 kb on - strandat 4390.136 kb on + strand, within Xcc-8004.4605.1at 4390.136 kb on + strand, within Xcc-8004.4605.1at 4390.137 kb on - strand, within Xcc-8004.4605.1at 4390.327 kb on + strand, within Xcc-8004.4606.1at 4390.327 kb on + strand, within Xcc-8004.4606.1at 4390.327 kb on + strand, within Xcc-8004.4606.1at 4390.327 kb on + strand, within Xcc-8004.4606.1at 4390.328 kb on - strand, within Xcc-8004.4606.1at 4390.328 kb on - strand, within Xcc-8004.4606.1at 4390.328 kb on - strand, within Xcc-8004.4606.1at 4390.328 kb on - strand, within Xcc-8004.4606.1at 4390.328 kb on - strand, within Xcc-8004.4606.1at 4390.328 kb on - strand, within Xcc-8004.4606.1at 4390.463 kb on + strand, within Xcc-8004.4606.1at 4390.464 kb on - strand, within Xcc-8004.4606.1at 4390.625 kb on + strand, within Xcc-8004.4606.1at 4390.625 kb on + strand, within Xcc-8004.4606.1at 4390.626 kb on - strand, within Xcc-8004.4606.1at 4390.626 kb on - strand, within Xcc-8004.4606.1at 4390.626 kb on - strand, within Xcc-8004.4606.1at 4390.626 kb on - strand, within Xcc-8004.4606.1at 4390.712 kb on + strand, within Xcc-8004.4606.1at 4390.935 kb on - strandat 4390.935 kb on - strandat 4390.935 kb on - strandat 4391.083 kb on + strandat 4391.083 kb on + strandat 4391.083 kb on + strandat 4391.083 kb on + strandat 4391.084 kb on - strandat 4391.084 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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4,388,706 + Xcc-8004.4604.1 0.18 -2.7
4,388,706 + Xcc-8004.4604.1 0.18 -2.4
4,388,707 - Xcc-8004.4604.1 0.18 -0.5
4,388,949 + Xcc-8004.4604.1 0.45 -0.9
4,388,949 + Xcc-8004.4604.1 0.45 -0.2
4,388,949 + Xcc-8004.4604.1 0.45 +0.0
4,388,949 + Xcc-8004.4604.1 0.45 -0.7
4,388,950 - Xcc-8004.4604.1 0.45 -0.0
4,388,950 - Xcc-8004.4604.1 0.45 -3.2
4,389,129 + Xcc-8004.4604.1 0.65 +2.1
4,389,129 + Xcc-8004.4604.1 0.65 -1.8
4,389,129 + Xcc-8004.4604.1 0.65 -1.3
4,389,129 + Xcc-8004.4604.1 0.65 +1.3
4,389,130 - Xcc-8004.4604.1 0.65 +1.0
4,389,130 - Xcc-8004.4604.1 0.65 +0.1
4,389,138 + Xcc-8004.4604.1 0.66 +0.1
4,389,138 + Xcc-8004.4604.1 0.66 +0.1
4,389,138 + Xcc-8004.4604.1 0.66 -1.0
4,389,138 + Xcc-8004.4604.1 0.66 -3.4
4,389,171 + Xcc-8004.4604.1 0.69 +0.4
4,389,334 - Xcc-8004.4604.1 0.87 +2.9
4,389,578 + -1.4
4,389,578 + +0.6
4,389,578 + -0.4
4,389,578 + +0.5
4,389,579 - -1.4
4,389,579 - -1.6
4,389,579 - +1.3
4,389,579 - -2.5
4,389,579 - -1.6
4,389,579 - -2.0
4,389,579 - -1.5
4,389,579 - -3.3
4,389,671 + -2.5
4,389,672 - -0.7
4,390,136 + Xcc-8004.4605.1 0.88 -1.4
4,390,136 + Xcc-8004.4605.1 0.88 -2.4
4,390,137 - Xcc-8004.4605.1 0.89 +0.1
4,390,327 + Xcc-8004.4606.1 0.12 +2.0
4,390,327 + Xcc-8004.4606.1 0.12 -2.2
4,390,327 + Xcc-8004.4606.1 0.12 -1.8
4,390,327 + Xcc-8004.4606.1 0.12 +1.4
4,390,328 - Xcc-8004.4606.1 0.12 -0.3
4,390,328 - Xcc-8004.4606.1 0.12 -0.2
4,390,328 - Xcc-8004.4606.1 0.12 +0.3
4,390,328 - Xcc-8004.4606.1 0.12 -0.9
4,390,328 - Xcc-8004.4606.1 0.12 +0.7
4,390,328 - Xcc-8004.4606.1 0.12 +0.1
4,390,463 + Xcc-8004.4606.1 0.32 +2.4
4,390,464 - Xcc-8004.4606.1 0.32 -0.3
4,390,625 + Xcc-8004.4606.1 0.56 +2.2
4,390,625 + Xcc-8004.4606.1 0.56 -0.0
4,390,626 - Xcc-8004.4606.1 0.56 -1.4
4,390,626 - Xcc-8004.4606.1 0.56 -0.8
4,390,626 - Xcc-8004.4606.1 0.56 -1.4
4,390,626 - Xcc-8004.4606.1 0.56 -1.6
4,390,712 + Xcc-8004.4606.1 0.69 -0.4
4,390,935 - -0.0
4,390,935 - +2.8
4,390,935 - -0.5
4,391,083 + +1.6
4,391,083 + -0.2
4,391,083 + +0.6
4,391,083 + -0.3
4,391,084 - +1.6
4,391,084 - +1.9

Or see this region's nucleotide sequence