Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4493.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4491.1 and Xcc-8004.4492.1 overlap by 4 nucleotidesXcc-8004.4492.1 and Xcc-8004.4493.1 overlap by 14 nucleotidesXcc-8004.4493.1 and Xcc-8004.4494.1 are separated by 11 nucleotides Xcc-8004.4491.1: Xcc-8004.4491.1 - Glycosyltransferase, at 4,298,874 to 4,299,845 Xcc-8004.4491.1 Xcc-8004.4492.1: Xcc-8004.4492.1 - Bifunctional acetyl transferase/isomerase, at 4,299,842 to 4,300,771 Xcc-8004.4492.1 Xcc-8004.4493.1: Xcc-8004.4493.1 - sugar translocase, at 4,300,758 to 4,301,207 Xcc-8004.4493.1 Xcc-8004.4494.1: Xcc-8004.4494.1 - hypothetical protein, at 4,301,219 to 4,303,411 Xcc-8004.4494.1 Position (kb) 4300 4301 4302Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4299.759 kb on + strandat 4299.759 kb on + strandat 4299.759 kb on + strandat 4299.759 kb on + strandat 4299.760 kb on - strandat 4299.760 kb on - strandat 4299.783 kb on - strandat 4299.800 kb on - strandat 4299.836 kb on + strandat 4299.836 kb on + strandat 4299.837 kb on - strandat 4299.924 kb on + strandat 4299.924 kb on + strandat 4299.924 kb on + strandat 4299.924 kb on + strandat 4299.990 kb on + strand, within Xcc-8004.4492.1at 4299.990 kb on + strand, within Xcc-8004.4492.1at 4299.991 kb on - strand, within Xcc-8004.4492.1at 4299.991 kb on - strand, within Xcc-8004.4492.1at 4299.991 kb on - strand, within Xcc-8004.4492.1at 4300.118 kb on + strand, within Xcc-8004.4492.1at 4300.118 kb on + strand, within Xcc-8004.4492.1at 4300.119 kb on - strand, within Xcc-8004.4492.1at 4300.295 kb on + strand, within Xcc-8004.4492.1at 4300.296 kb on - strand, within Xcc-8004.4492.1at 4300.296 kb on - strand, within Xcc-8004.4492.1at 4300.296 kb on - strand, within Xcc-8004.4492.1at 4300.351 kb on + strand, within Xcc-8004.4492.1at 4300.352 kb on - strand, within Xcc-8004.4492.1at 4300.519 kb on + strand, within Xcc-8004.4492.1at 4300.519 kb on + strand, within Xcc-8004.4492.1at 4300.520 kb on - strand, within Xcc-8004.4492.1at 4300.658 kb on + strand, within Xcc-8004.4492.1at 4300.658 kb on + strand, within Xcc-8004.4492.1at 4300.658 kb on + strand, within Xcc-8004.4492.1at 4300.658 kb on + strand, within Xcc-8004.4492.1at 4300.658 kb on + strand, within Xcc-8004.4492.1at 4300.659 kb on - strand, within Xcc-8004.4492.1at 4300.659 kb on - strand, within Xcc-8004.4492.1at 4300.664 kb on + strand, within Xcc-8004.4492.1at 4300.664 kb on + strand, within Xcc-8004.4492.1at 4300.664 kb on + strand, within Xcc-8004.4492.1at 4300.665 kb on - strand, within Xcc-8004.4492.1at 4300.707 kb on - strandat 4300.733 kb on + strandat 4300.734 kb on - strandat 4300.838 kb on - strand, within Xcc-8004.4493.1at 4300.976 kb on - strand, within Xcc-8004.4493.1at 4301.038 kb on - strand, within Xcc-8004.4493.1at 4301.038 kb on - strand, within Xcc-8004.4493.1at 4301.045 kb on - strand, within Xcc-8004.4493.1at 4301.055 kb on - strand, within Xcc-8004.4493.1at 4301.098 kb on + strand, within Xcc-8004.4493.1at 4301.107 kb on + strand, within Xcc-8004.4493.1at 4301.108 kb on - strand, within Xcc-8004.4493.1at 4301.155 kb on + strand, within Xcc-8004.4493.1at 4301.155 kb on + strand, within Xcc-8004.4493.1at 4301.156 kb on - strand, within Xcc-8004.4493.1at 4301.205 kb on + strandat 4301.205 kb on + strandat 4301.205 kb on + strandat 4301.205 kb on + strandat 4301.206 kb on - strandat 4301.242 kb on + strandat 4301.243 kb on - strandat 4301.249 kb on - strandat 4301.326 kb on + strandat 4301.327 kb on - strandat 4301.327 kb on - strandat 4301.327 kb on - strandat 4301.329 kb on + strandat 4301.329 kb on + strandat 4301.330 kb on - strandat 4301.361 kb on + strandat 4301.361 kb on + strandat 4301.361 kb on + strandat 4301.361 kb on + strandat 4301.361 kb on + strandat 4301.361 kb on + strandat 4301.362 kb on - strandat 4301.362 kb on - strandat 4301.362 kb on - strandat 4301.362 kb on - strandat 4301.367 kb on + strandat 4301.367 kb on + strandat 4301.378 kb on + strandat 4301.378 kb on + strandat 4301.380 kb on - strandat 4301.465 kb on + strand, within Xcc-8004.4494.1at 4301.465 kb on + strand, within Xcc-8004.4494.1at 4301.465 kb on + strand, within Xcc-8004.4494.1at 4301.466 kb on - strand, within Xcc-8004.4494.1at 4301.466 kb on - strand, within Xcc-8004.4494.1at 4301.466 kb on - strand, within Xcc-8004.4494.1at 4301.466 kb on - strand, within Xcc-8004.4494.1at 4301.466 kb on - strand, within Xcc-8004.4494.1at 4301.466 kb on - strand, within Xcc-8004.4494.1at 4301.467 kb on + strand, within Xcc-8004.4494.1at 4301.467 kb on + strand, within Xcc-8004.4494.1at 4301.467 kb on + strand, within Xcc-8004.4494.1at 4301.467 kb on + strand, within Xcc-8004.4494.1at 4301.467 kb on + strand, within Xcc-8004.4494.1at 4301.467 kb on + strand, within Xcc-8004.4494.1at 4301.467 kb on + strand, within Xcc-8004.4494.1at 4301.467 kb on + strand, within Xcc-8004.4494.1at 4301.467 kb on + strand, within Xcc-8004.4494.1at 4301.467 kb on + strand, within Xcc-8004.4494.1at 4301.468 kb on - strand, within Xcc-8004.4494.1at 4301.468 kb on - strand, within Xcc-8004.4494.1at 4301.468 kb on - strand, within Xcc-8004.4494.1at 4301.468 kb on - strand, within Xcc-8004.4494.1at 4301.468 kb on - strand, within Xcc-8004.4494.1at 4301.468 kb on - strand, within Xcc-8004.4494.1at 4301.468 kb on - strand, within Xcc-8004.4494.1at 4301.489 kb on - strand, within Xcc-8004.4494.1at 4301.500 kb on + strand, within Xcc-8004.4494.1at 4301.501 kb on - strand, within Xcc-8004.4494.1at 4301.501 kb on - strand, within Xcc-8004.4494.1at 4301.502 kb on + strand, within Xcc-8004.4494.1at 4301.502 kb on + strand, within Xcc-8004.4494.1at 4301.502 kb on + strand, within Xcc-8004.4494.1at 4301.502 kb on + strand, within Xcc-8004.4494.1at 4301.502 kb on + strand, within Xcc-8004.4494.1at 4301.503 kb on - strand, within Xcc-8004.4494.1at 4301.509 kb on - strand, within Xcc-8004.4494.1at 4301.520 kb on + strand, within Xcc-8004.4494.1at 4301.521 kb on - strand, within Xcc-8004.4494.1at 4301.587 kb on + strand, within Xcc-8004.4494.1at 4301.587 kb on + strand, within Xcc-8004.4494.1at 4301.588 kb on - strand, within Xcc-8004.4494.1at 4301.634 kb on + strand, within Xcc-8004.4494.1at 4301.635 kb on - strand, within Xcc-8004.4494.1at 4301.679 kb on + strand, within Xcc-8004.4494.1at 4301.787 kb on - strand, within Xcc-8004.4494.1at 4301.829 kb on + strand, within Xcc-8004.4494.1at 4301.829 kb on + strand, within Xcc-8004.4494.1at 4301.829 kb on + strand, within Xcc-8004.4494.1at 4301.830 kb on - strand, within Xcc-8004.4494.1at 4301.831 kb on + strand, within Xcc-8004.4494.1at 4301.831 kb on + strand, within Xcc-8004.4494.1at 4301.831 kb on + strand, within Xcc-8004.4494.1at 4301.832 kb on - strand, within Xcc-8004.4494.1at 4301.832 kb on - strand, within Xcc-8004.4494.1at 4301.858 kb on - strand, within Xcc-8004.4494.1at 4301.858 kb on - strand, within Xcc-8004.4494.1at 4301.927 kb on + strand, within Xcc-8004.4494.1at 4301.936 kb on + strand, within Xcc-8004.4494.1at 4301.936 kb on + strand, within Xcc-8004.4494.1at 4301.937 kb on - strand, within Xcc-8004.4494.1at 4301.937 kb on - strand, within Xcc-8004.4494.1at 4301.960 kb on + strand, within Xcc-8004.4494.1at 4301.960 kb on + strand, within Xcc-8004.4494.1at 4301.961 kb on - strand, within Xcc-8004.4494.1at 4301.974 kb on - strand, within Xcc-8004.4494.1at 4301.983 kb on + strand, within Xcc-8004.4494.1at 4301.983 kb on + strand, within Xcc-8004.4494.1at 4301.983 kb on + strand, within Xcc-8004.4494.1at 4301.984 kb on - strand, within Xcc-8004.4494.1at 4302.008 kb on - strand, within Xcc-8004.4494.1at 4302.012 kb on + strand, within Xcc-8004.4494.1at 4302.012 kb on + strand, within Xcc-8004.4494.1at 4302.048 kb on + strand, within Xcc-8004.4494.1at 4302.048 kb on + strand, within Xcc-8004.4494.1at 4302.076 kb on + strand, within Xcc-8004.4494.1at 4302.077 kb on - strand, within Xcc-8004.4494.1at 4302.108 kb on - strand, within Xcc-8004.4494.1at 4302.133 kb on - strand, within Xcc-8004.4494.1at 4302.164 kb on - strand, within Xcc-8004.4494.1at 4302.164 kb on - strand, within Xcc-8004.4494.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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4,299,759 + +1.3
4,299,759 + +0.3
4,299,759 + -1.0
4,299,759 + -1.3
4,299,760 - +3.4
4,299,760 - +1.9
4,299,783 - -0.8
4,299,800 - +1.0
4,299,836 + -2.0
4,299,836 + -1.0
4,299,837 - +1.3
4,299,924 + +0.2
4,299,924 + +1.0
4,299,924 + +0.2
4,299,924 + +3.1
4,299,990 + Xcc-8004.4492.1 0.16 +1.2
4,299,990 + Xcc-8004.4492.1 0.16 -2.0
4,299,991 - Xcc-8004.4492.1 0.16 -0.7
4,299,991 - Xcc-8004.4492.1 0.16 -2.0
4,299,991 - Xcc-8004.4492.1 0.16 +2.1
4,300,118 + Xcc-8004.4492.1 0.30 +1.1
4,300,118 + Xcc-8004.4492.1 0.30 +0.3
4,300,119 - Xcc-8004.4492.1 0.30 +1.7
4,300,295 + Xcc-8004.4492.1 0.49 -2.2
4,300,296 - Xcc-8004.4492.1 0.49 -0.2
4,300,296 - Xcc-8004.4492.1 0.49 +0.7
4,300,296 - Xcc-8004.4492.1 0.49 +1.4
4,300,351 + Xcc-8004.4492.1 0.55 +1.4
4,300,352 - Xcc-8004.4492.1 0.55 -0.9
4,300,519 + Xcc-8004.4492.1 0.73 -2.3
4,300,519 + Xcc-8004.4492.1 0.73 -1.2
4,300,520 - Xcc-8004.4492.1 0.73 +0.3
4,300,658 + Xcc-8004.4492.1 0.88 +1.1
4,300,658 + Xcc-8004.4492.1 0.88 +0.2
4,300,658 + Xcc-8004.4492.1 0.88 -1.0
4,300,658 + Xcc-8004.4492.1 0.88 -0.3
4,300,658 + Xcc-8004.4492.1 0.88 -3.2
4,300,659 - Xcc-8004.4492.1 0.88 -1.5
4,300,659 - Xcc-8004.4492.1 0.88 -2.0
4,300,664 + Xcc-8004.4492.1 0.88 -3.0
4,300,664 + Xcc-8004.4492.1 0.88 +1.5
4,300,664 + Xcc-8004.4492.1 0.88 -0.5
4,300,665 - Xcc-8004.4492.1 0.88 +1.1
4,300,707 - +1.2
4,300,733 + -0.5
4,300,734 - +0.3
4,300,838 - Xcc-8004.4493.1 0.18 -0.5
4,300,976 - Xcc-8004.4493.1 0.48 -1.3
4,301,038 - Xcc-8004.4493.1 0.62 -1.8
4,301,038 - Xcc-8004.4493.1 0.62 -1.0
4,301,045 - Xcc-8004.4493.1 0.64 -3.1
4,301,055 - Xcc-8004.4493.1 0.66 -1.7
4,301,098 + Xcc-8004.4493.1 0.76 -0.6
4,301,107 + Xcc-8004.4493.1 0.78 -1.2
4,301,108 - Xcc-8004.4493.1 0.78 -2.6
4,301,155 + Xcc-8004.4493.1 0.88 -1.5
4,301,155 + Xcc-8004.4493.1 0.88 +0.3
4,301,156 - Xcc-8004.4493.1 0.88 -3.0
4,301,205 + -1.5
4,301,205 + +0.0
4,301,205 + -3.2
4,301,205 + -0.3
4,301,206 - +1.3
4,301,242 + -1.2
4,301,243 - +3.3
4,301,249 - -0.7
4,301,326 + +1.4
4,301,327 - -2.2
4,301,327 - -0.5
4,301,327 - +1.4
4,301,329 + -0.1
4,301,329 + -1.3
4,301,330 - -2.7
4,301,361 + +1.9
4,301,361 + -3.7
4,301,361 + -0.5
4,301,361 + -0.7
4,301,361 + +3.3
4,301,361 + +1.2
4,301,362 - +2.3
4,301,362 - -0.9
4,301,362 - -0.3
4,301,362 - -3.3
4,301,367 + -0.8
4,301,367 + -2.5
4,301,378 + -2.9
4,301,378 + -0.3
4,301,380 - -1.2
4,301,465 + Xcc-8004.4494.1 0.11 +1.8
4,301,465 + Xcc-8004.4494.1 0.11 +0.7
4,301,465 + Xcc-8004.4494.1 0.11 -1.5
4,301,466 - Xcc-8004.4494.1 0.11 +2.0
4,301,466 - Xcc-8004.4494.1 0.11 +0.8
4,301,466 - Xcc-8004.4494.1 0.11 -0.0
4,301,466 - Xcc-8004.4494.1 0.11 -1.3
4,301,466 - Xcc-8004.4494.1 0.11 -2.5
4,301,466 - Xcc-8004.4494.1 0.11 +1.2
4,301,467 + Xcc-8004.4494.1 0.11 +0.8
4,301,467 + Xcc-8004.4494.1 0.11 -1.8
4,301,467 + Xcc-8004.4494.1 0.11 -0.8
4,301,467 + Xcc-8004.4494.1 0.11 -2.6
4,301,467 + Xcc-8004.4494.1 0.11 +1.5
4,301,467 + Xcc-8004.4494.1 0.11 -0.7
4,301,467 + Xcc-8004.4494.1 0.11 -2.9
4,301,467 + Xcc-8004.4494.1 0.11 +1.3
4,301,467 + Xcc-8004.4494.1 0.11 -2.2
4,301,467 + Xcc-8004.4494.1 0.11 +1.3
4,301,468 - Xcc-8004.4494.1 0.11 -1.7
4,301,468 - Xcc-8004.4494.1 0.11 -0.1
4,301,468 - Xcc-8004.4494.1 0.11 +2.3
4,301,468 - Xcc-8004.4494.1 0.11 -0.9
4,301,468 - Xcc-8004.4494.1 0.11 -2.6
4,301,468 - Xcc-8004.4494.1 0.11 +1.8
4,301,468 - Xcc-8004.4494.1 0.11 -0.3
4,301,489 - Xcc-8004.4494.1 0.12 -2.9
4,301,500 + Xcc-8004.4494.1 0.13 +3.4
4,301,501 - Xcc-8004.4494.1 0.13 +0.3
4,301,501 - Xcc-8004.4494.1 0.13 +3.9
4,301,502 + Xcc-8004.4494.1 0.13 -1.9
4,301,502 + Xcc-8004.4494.1 0.13 -2.2
4,301,502 + Xcc-8004.4494.1 0.13 -0.5
4,301,502 + Xcc-8004.4494.1 0.13 -1.8
4,301,502 + Xcc-8004.4494.1 0.13 -0.6
4,301,503 - Xcc-8004.4494.1 0.13 -1.9
4,301,509 - Xcc-8004.4494.1 0.13 +0.1
4,301,520 + Xcc-8004.4494.1 0.14 +0.8
4,301,521 - Xcc-8004.4494.1 0.14 -0.7
4,301,587 + Xcc-8004.4494.1 0.17 +0.4
4,301,587 + Xcc-8004.4494.1 0.17 -2.9
4,301,588 - Xcc-8004.4494.1 0.17 +1.6
4,301,634 + Xcc-8004.4494.1 0.19 -1.9
4,301,635 - Xcc-8004.4494.1 0.19 -0.0
4,301,679 + Xcc-8004.4494.1 0.21 +1.4
4,301,787 - Xcc-8004.4494.1 0.26 -0.7
4,301,829 + Xcc-8004.4494.1 0.28 +1.6
4,301,829 + Xcc-8004.4494.1 0.28 +0.2
4,301,829 + Xcc-8004.4494.1 0.28 -1.5
4,301,830 - Xcc-8004.4494.1 0.28 +1.1
4,301,831 + Xcc-8004.4494.1 0.28 -1.5
4,301,831 + Xcc-8004.4494.1 0.28 -0.6
4,301,831 + Xcc-8004.4494.1 0.28 -0.7
4,301,832 - Xcc-8004.4494.1 0.28 -0.2
4,301,832 - Xcc-8004.4494.1 0.28 +1.1
4,301,858 - Xcc-8004.4494.1 0.29 +1.8
4,301,858 - Xcc-8004.4494.1 0.29 -1.3
4,301,927 + Xcc-8004.4494.1 0.32 -0.0
4,301,936 + Xcc-8004.4494.1 0.33 -1.8
4,301,936 + Xcc-8004.4494.1 0.33 -2.5
4,301,937 - Xcc-8004.4494.1 0.33 +1.0
4,301,937 - Xcc-8004.4494.1 0.33 +1.4
4,301,960 + Xcc-8004.4494.1 0.34 -1.2
4,301,960 + Xcc-8004.4494.1 0.34 -1.2
4,301,961 - Xcc-8004.4494.1 0.34 +0.4
4,301,974 - Xcc-8004.4494.1 0.34 -2.0
4,301,983 + Xcc-8004.4494.1 0.35 +0.5
4,301,983 + Xcc-8004.4494.1 0.35 -0.9
4,301,983 + Xcc-8004.4494.1 0.35 +1.4
4,301,984 - Xcc-8004.4494.1 0.35 +0.4
4,302,008 - Xcc-8004.4494.1 0.36 -0.2
4,302,012 + Xcc-8004.4494.1 0.36 +0.5
4,302,012 + Xcc-8004.4494.1 0.36 +0.5
4,302,048 + Xcc-8004.4494.1 0.38 +1.1
4,302,048 + Xcc-8004.4494.1 0.38 +1.5
4,302,076 + Xcc-8004.4494.1 0.39 +3.0
4,302,077 - Xcc-8004.4494.1 0.39 -1.8
4,302,108 - Xcc-8004.4494.1 0.41 +1.1
4,302,133 - Xcc-8004.4494.1 0.42 +2.3
4,302,164 - Xcc-8004.4494.1 0.43 +0.3
4,302,164 - Xcc-8004.4494.1 0.43 -3.4

Or see this region's nucleotide sequence