Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4416.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4415.1 and Xcc-8004.4416.1 are separated by 187 nucleotidesXcc-8004.4416.1 and Xcc-8004.4418.1 are separated by 103 nucleotides Xcc-8004.4415.1: Xcc-8004.4415.1 - Ferrichrome-iron receptor, at 4,225,042 to 4,227,210 Xcc-8004.4415.1 Xcc-8004.4416.1: Xcc-8004.4416.1 - hypothetical protein, at 4,227,398 to 4,227,973 Xcc-8004.4416.1 Xcc-8004.4418.1: Xcc-8004.4418.1 - Transcriptional regulator, GntR family, at 4,228,077 to 4,228,805 Xcc-8004.4418.1 Position (kb) 4227 4228Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4226.407 kb on + strand, within Xcc-8004.4415.1at 4226.408 kb on - strand, within Xcc-8004.4415.1at 4226.408 kb on - strand, within Xcc-8004.4415.1at 4226.527 kb on + strand, within Xcc-8004.4415.1at 4226.528 kb on - strand, within Xcc-8004.4415.1at 4226.528 kb on - strand, within Xcc-8004.4415.1at 4226.617 kb on + strand, within Xcc-8004.4415.1at 4226.734 kb on + strand, within Xcc-8004.4415.1at 4226.734 kb on + strand, within Xcc-8004.4415.1at 4226.735 kb on - strand, within Xcc-8004.4415.1at 4226.866 kb on + strand, within Xcc-8004.4415.1at 4226.924 kb on - strand, within Xcc-8004.4415.1at 4226.971 kb on + strand, within Xcc-8004.4415.1at 4226.971 kb on + strand, within Xcc-8004.4415.1at 4226.972 kb on - strand, within Xcc-8004.4415.1at 4226.972 kb on - strand, within Xcc-8004.4415.1at 4227.119 kb on - strandat 4227.139 kb on + strandat 4227.154 kb on + strandat 4227.155 kb on - strandat 4227.155 kb on - strandat 4227.155 kb on - strandat 4227.158 kb on + strandat 4227.159 kb on - strandat 4227.159 kb on - strandat 4227.159 kb on - strandat 4227.159 kb on - strandat 4227.348 kb on + strandat 4227.348 kb on + strandat 4227.349 kb on - strandat 4227.349 kb on - strandat 4227.349 kb on - strandat 4227.506 kb on + strand, within Xcc-8004.4416.1at 4227.521 kb on + strand, within Xcc-8004.4416.1at 4227.522 kb on - strand, within Xcc-8004.4416.1at 4227.522 kb on - strand, within Xcc-8004.4416.1at 4227.522 kb on - strand, within Xcc-8004.4416.1at 4227.535 kb on - strand, within Xcc-8004.4416.1at 4227.535 kb on - strand, within Xcc-8004.4416.1at 4227.535 kb on - strand, within Xcc-8004.4416.1at 4227.537 kb on - strand, within Xcc-8004.4416.1at 4227.564 kb on - strand, within Xcc-8004.4416.1at 4227.579 kb on + strand, within Xcc-8004.4416.1at 4227.579 kb on + strand, within Xcc-8004.4416.1at 4227.579 kb on + strand, within Xcc-8004.4416.1at 4227.579 kb on + strand, within Xcc-8004.4416.1at 4227.579 kb on + strand, within Xcc-8004.4416.1at 4227.580 kb on - strand, within Xcc-8004.4416.1at 4227.580 kb on - strand, within Xcc-8004.4416.1at 4227.580 kb on - strand, within Xcc-8004.4416.1at 4227.581 kb on + strand, within Xcc-8004.4416.1at 4227.581 kb on + strand, within Xcc-8004.4416.1at 4227.581 kb on + strand, within Xcc-8004.4416.1at 4227.581 kb on + strand, within Xcc-8004.4416.1at 4227.582 kb on - strand, within Xcc-8004.4416.1at 4227.582 kb on - strand, within Xcc-8004.4416.1at 4227.707 kb on + strand, within Xcc-8004.4416.1at 4227.707 kb on + strand, within Xcc-8004.4416.1at 4227.707 kb on + strand, within Xcc-8004.4416.1at 4227.708 kb on - strand, within Xcc-8004.4416.1at 4227.708 kb on - strand, within Xcc-8004.4416.1at 4227.842 kb on + strand, within Xcc-8004.4416.1at 4227.842 kb on + strand, within Xcc-8004.4416.1at 4227.842 kb on + strand, within Xcc-8004.4416.1at 4227.843 kb on - strand, within Xcc-8004.4416.1at 4227.843 kb on - strand, within Xcc-8004.4416.1at 4227.917 kb on + strandat 4228.005 kb on + strandat 4228.005 kb on + strandat 4228.006 kb on - strandat 4228.252 kb on - strand, within Xcc-8004.4418.1at 4228.252 kb on - strand, within Xcc-8004.4418.1at 4228.252 kb on - strand, within Xcc-8004.4418.1at 4228.332 kb on + strand, within Xcc-8004.4418.1at 4228.332 kb on + strand, within Xcc-8004.4418.1at 4228.332 kb on + strand, within Xcc-8004.4418.1at 4228.333 kb on - strand, within Xcc-8004.4418.1at 4228.333 kb on - strand, within Xcc-8004.4418.1at 4228.333 kb on - strand, within Xcc-8004.4418.1at 4228.333 kb on - strand, within Xcc-8004.4418.1at 4228.333 kb on - strand, within Xcc-8004.4418.1at 4228.404 kb on + strand, within Xcc-8004.4418.1at 4228.405 kb on - strand, within Xcc-8004.4418.1at 4228.905 kb on - strandat 4228.951 kb on + strandat 4228.965 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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4,226,407 + Xcc-8004.4415.1 0.63 -0.3
4,226,408 - Xcc-8004.4415.1 0.63 +2.1
4,226,408 - Xcc-8004.4415.1 0.63 +1.1
4,226,527 + Xcc-8004.4415.1 0.68 -0.6
4,226,528 - Xcc-8004.4415.1 0.69 -0.3
4,226,528 - Xcc-8004.4415.1 0.69 +3.2
4,226,617 + Xcc-8004.4415.1 0.73 +0.9
4,226,734 + Xcc-8004.4415.1 0.78 +0.7
4,226,734 + Xcc-8004.4415.1 0.78 -2.9
4,226,735 - Xcc-8004.4415.1 0.78 -3.7
4,226,866 + Xcc-8004.4415.1 0.84 -2.7
4,226,924 - Xcc-8004.4415.1 0.87 +2.7
4,226,971 + Xcc-8004.4415.1 0.89 -2.5
4,226,971 + Xcc-8004.4415.1 0.89 -0.1
4,226,972 - Xcc-8004.4415.1 0.89 -2.0
4,226,972 - Xcc-8004.4415.1 0.89 +1.5
4,227,119 - -0.8
4,227,139 + -2.8
4,227,154 + -2.6
4,227,155 - +0.4
4,227,155 - -1.4
4,227,155 - -2.3
4,227,158 + +1.4
4,227,159 - -0.5
4,227,159 - -1.7
4,227,159 - +0.1
4,227,159 - -0.8
4,227,348 + -0.7
4,227,348 + +0.6
4,227,349 - -0.9
4,227,349 - -0.9
4,227,349 - -0.3
4,227,506 + Xcc-8004.4416.1 0.19 +1.4
4,227,521 + Xcc-8004.4416.1 0.21 -2.0
4,227,522 - Xcc-8004.4416.1 0.22 -2.2
4,227,522 - Xcc-8004.4416.1 0.22 -2.8
4,227,522 - Xcc-8004.4416.1 0.22 -2.1
4,227,535 - Xcc-8004.4416.1 0.24 -2.0
4,227,535 - Xcc-8004.4416.1 0.24 -1.9
4,227,535 - Xcc-8004.4416.1 0.24 -0.5
4,227,537 - Xcc-8004.4416.1 0.24 -2.4
4,227,564 - Xcc-8004.4416.1 0.29 -0.9
4,227,579 + Xcc-8004.4416.1 0.31 +0.7
4,227,579 + Xcc-8004.4416.1 0.31 +1.3
4,227,579 + Xcc-8004.4416.1 0.31 -1.4
4,227,579 + Xcc-8004.4416.1 0.31 +1.1
4,227,579 + Xcc-8004.4416.1 0.31 -2.5
4,227,580 - Xcc-8004.4416.1 0.32 -1.1
4,227,580 - Xcc-8004.4416.1 0.32 -0.7
4,227,580 - Xcc-8004.4416.1 0.32 -0.6
4,227,581 + Xcc-8004.4416.1 0.32 -1.7
4,227,581 + Xcc-8004.4416.1 0.32 -0.7
4,227,581 + Xcc-8004.4416.1 0.32 -1.5
4,227,581 + Xcc-8004.4416.1 0.32 -0.6
4,227,582 - Xcc-8004.4416.1 0.32 +2.8
4,227,582 - Xcc-8004.4416.1 0.32 -0.9
4,227,707 + Xcc-8004.4416.1 0.54 +0.5
4,227,707 + Xcc-8004.4416.1 0.54 -1.0
4,227,707 + Xcc-8004.4416.1 0.54 +0.1
4,227,708 - Xcc-8004.4416.1 0.54 -2.0
4,227,708 - Xcc-8004.4416.1 0.54 +0.1
4,227,842 + Xcc-8004.4416.1 0.77 -1.7
4,227,842 + Xcc-8004.4416.1 0.77 -1.0
4,227,842 + Xcc-8004.4416.1 0.77 -0.8
4,227,843 - Xcc-8004.4416.1 0.77 +0.2
4,227,843 - Xcc-8004.4416.1 0.77 +0.3
4,227,917 + +0.0
4,228,005 + +0.5
4,228,005 + +1.4
4,228,006 - -1.4
4,228,252 - Xcc-8004.4418.1 0.24 -1.0
4,228,252 - Xcc-8004.4418.1 0.24 -3.1
4,228,252 - Xcc-8004.4418.1 0.24 +1.1
4,228,332 + Xcc-8004.4418.1 0.35 +3.8
4,228,332 + Xcc-8004.4418.1 0.35 +1.4
4,228,332 + Xcc-8004.4418.1 0.35 +0.4
4,228,333 - Xcc-8004.4418.1 0.35 -0.0
4,228,333 - Xcc-8004.4418.1 0.35 -1.3
4,228,333 - Xcc-8004.4418.1 0.35 -0.4
4,228,333 - Xcc-8004.4418.1 0.35 +0.6
4,228,333 - Xcc-8004.4418.1 0.35 -0.3
4,228,404 + Xcc-8004.4418.1 0.45 +0.4
4,228,405 - Xcc-8004.4418.1 0.45 -0.6
4,228,905 - +0.3
4,228,951 + +0.5
4,228,965 - -0.0

Or see this region's nucleotide sequence