Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.386.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.385.1 and Xcc-8004.386.1 are separated by 621 nucleotidesXcc-8004.386.1 and Xcc-8004.387.1 overlap by 20 nucleotides Xcc-8004.385.1: Xcc-8004.385.1 - FIG01212287: hypothetical protein, at 368,490 to 369,158 Xcc-8004.385.1 Xcc-8004.386.1: Xcc-8004.386.1 - LysR family transcriptional regulator STM3121, at 369,780 to 370,703 Xcc-8004.386.1 Xcc-8004.387.1: Xcc-8004.387.1 - Permeases of the major facilitator superfamily, at 370,684 to 372,033 Xcc-8004.387.1 Position (kb) 369 370 371Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 368.866 kb on + strand, within Xcc-8004.385.1at 368.866 kb on + strand, within Xcc-8004.385.1at 368.867 kb on - strand, within Xcc-8004.385.1at 369.100 kb on + strandat 369.100 kb on + strandat 369.199 kb on + strandat 369.200 kb on - strandat 369.335 kb on + strandat 369.335 kb on + strandat 369.384 kb on - strandat 369.384 kb on - strandat 369.400 kb on - strandat 369.400 kb on - strandat 369.461 kb on + strandat 369.462 kb on - strandat 369.491 kb on + strandat 369.519 kb on + strandat 369.519 kb on + strandat 369.535 kb on + strandat 369.535 kb on + strandat 369.536 kb on - strandat 369.597 kb on + strandat 369.597 kb on + strandat 369.598 kb on - strandat 369.628 kb on + strandat 369.656 kb on + strandat 369.657 kb on - strandat 369.657 kb on - strandat 369.657 kb on - strandat 369.657 kb on - strandat 369.672 kb on + strandat 369.673 kb on - strandat 369.673 kb on - strandat 369.775 kb on + strandat 369.895 kb on + strand, within Xcc-8004.386.1at 370.054 kb on + strand, within Xcc-8004.386.1at 370.055 kb on - strand, within Xcc-8004.386.1at 370.055 kb on - strand, within Xcc-8004.386.1at 370.156 kb on - strand, within Xcc-8004.386.1at 370.645 kb on + strandat 370.645 kb on + strandat 370.646 kb on - strandat 370.646 kb on - strandat 370.646 kb on - strandat 370.705 kb on + strandat 370.705 kb on + strandat 370.706 kb on - strandat 370.888 kb on + strand, within Xcc-8004.387.1at 370.888 kb on + strand, within Xcc-8004.387.1at 370.888 kb on + strand, within Xcc-8004.387.1at 370.888 kb on + strand, within Xcc-8004.387.1at 370.888 kb on + strand, within Xcc-8004.387.1at 370.889 kb on - strand, within Xcc-8004.387.1at 370.889 kb on - strand, within Xcc-8004.387.1at 371.173 kb on + strand, within Xcc-8004.387.1at 371.173 kb on + strand, within Xcc-8004.387.1at 371.174 kb on - strand, within Xcc-8004.387.1at 371.174 kb on - strand, within Xcc-8004.387.1at 371.174 kb on - strand, within Xcc-8004.387.1at 371.174 kb on - strand, within Xcc-8004.387.1at 371.174 kb on - strand, within Xcc-8004.387.1at 371.224 kb on + strand, within Xcc-8004.387.1at 371.224 kb on + strand, within Xcc-8004.387.1at 371.225 kb on - strand, within Xcc-8004.387.1at 371.225 kb on - strand, within Xcc-8004.387.1at 371.290 kb on + strand, within Xcc-8004.387.1at 371.290 kb on + strand, within Xcc-8004.387.1at 371.290 kb on + strand, within Xcc-8004.387.1at 371.291 kb on - strand, within Xcc-8004.387.1at 371.410 kb on + strand, within Xcc-8004.387.1at 371.410 kb on + strand, within Xcc-8004.387.1at 371.410 kb on + strand, within Xcc-8004.387.1at 371.410 kb on + strand, within Xcc-8004.387.1at 371.410 kb on + strand, within Xcc-8004.387.1at 371.411 kb on - strand, within Xcc-8004.387.1at 371.411 kb on - strand, within Xcc-8004.387.1at 371.411 kb on - strand, within Xcc-8004.387.1at 371.411 kb on - strand, within Xcc-8004.387.1at 371.411 kb on - strand, within Xcc-8004.387.1at 371.506 kb on + strand, within Xcc-8004.387.1at 371.506 kb on + strand, within Xcc-8004.387.1at 371.506 kb on + strand, within Xcc-8004.387.1at 371.506 kb on + strand, within Xcc-8004.387.1at 371.507 kb on - strand, within Xcc-8004.387.1at 371.512 kb on + strand, within Xcc-8004.387.1at 371.512 kb on + strand, within Xcc-8004.387.1at 371.512 kb on + strand, within Xcc-8004.387.1at 371.513 kb on - strand, within Xcc-8004.387.1at 371.513 kb on - strand, within Xcc-8004.387.1at 371.513 kb on - strand, within Xcc-8004.387.1at 371.513 kb on - strand, within Xcc-8004.387.1at 371.542 kb on + strand, within Xcc-8004.387.1at 371.542 kb on + strand, within Xcc-8004.387.1at 371.584 kb on + strand, within Xcc-8004.387.1at 371.585 kb on - strand, within Xcc-8004.387.1at 371.585 kb on - strand, within Xcc-8004.387.1at 371.585 kb on - strand, within Xcc-8004.387.1at 371.585 kb on - strand, within Xcc-8004.387.1at 371.585 kb on - strand, within Xcc-8004.387.1at 371.585 kb on - strand, within Xcc-8004.387.1at 371.585 kb on - strand, within Xcc-8004.387.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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368,866 + Xcc-8004.385.1 0.56 +1.7
368,866 + Xcc-8004.385.1 0.56 +0.4
368,867 - Xcc-8004.385.1 0.56 +1.4
369,100 + -2.5
369,100 + +0.3
369,199 + -0.6
369,200 - -1.4
369,335 + +0.3
369,335 + +1.5
369,384 - +1.1
369,384 - -1.8
369,400 - +0.3
369,400 - -2.2
369,461 + -1.2
369,462 - -1.3
369,491 + +2.0
369,519 + +3.4
369,519 + +2.2
369,535 + +1.6
369,535 + +1.3
369,536 - -0.1
369,597 + -1.6
369,597 + -3.1
369,598 - -0.4
369,628 + -1.6
369,656 + +0.2
369,657 - +0.1
369,657 - -2.6
369,657 - +0.1
369,657 - +0.6
369,672 + +1.3
369,673 - -0.9
369,673 - -3.2
369,775 + +0.1
369,895 + Xcc-8004.386.1 0.12 -1.6
370,054 + Xcc-8004.386.1 0.30 +0.9
370,055 - Xcc-8004.386.1 0.30 -1.3
370,055 - Xcc-8004.386.1 0.30 -0.6
370,156 - Xcc-8004.386.1 0.41 -2.9
370,645 + -0.4
370,645 + -1.4
370,646 - -2.9
370,646 - -2.4
370,646 - +0.5
370,705 + +0.3
370,705 + -1.6
370,706 - -3.6
370,888 + Xcc-8004.387.1 0.15 +1.8
370,888 + Xcc-8004.387.1 0.15 +2.0
370,888 + Xcc-8004.387.1 0.15 +1.5
370,888 + Xcc-8004.387.1 0.15 -3.3
370,888 + Xcc-8004.387.1 0.15 -2.0
370,889 - Xcc-8004.387.1 0.15 +1.9
370,889 - Xcc-8004.387.1 0.15 +2.1
371,173 + Xcc-8004.387.1 0.36 +1.7
371,173 + Xcc-8004.387.1 0.36 -0.5
371,174 - Xcc-8004.387.1 0.36 +0.4
371,174 - Xcc-8004.387.1 0.36 +2.0
371,174 - Xcc-8004.387.1 0.36 -1.4
371,174 - Xcc-8004.387.1 0.36 -0.5
371,174 - Xcc-8004.387.1 0.36 -2.5
371,224 + Xcc-8004.387.1 0.40 -1.6
371,224 + Xcc-8004.387.1 0.40 +0.1
371,225 - Xcc-8004.387.1 0.40 -2.4
371,225 - Xcc-8004.387.1 0.40 +0.6
371,290 + Xcc-8004.387.1 0.45 +0.3
371,290 + Xcc-8004.387.1 0.45 +1.5
371,290 + Xcc-8004.387.1 0.45 +2.3
371,291 - Xcc-8004.387.1 0.45 +0.5
371,410 + Xcc-8004.387.1 0.54 +0.4
371,410 + Xcc-8004.387.1 0.54 +1.9
371,410 + Xcc-8004.387.1 0.54 -0.5
371,410 + Xcc-8004.387.1 0.54 +0.3
371,410 + Xcc-8004.387.1 0.54 +1.6
371,411 - Xcc-8004.387.1 0.54 +1.3
371,411 - Xcc-8004.387.1 0.54 -3.4
371,411 - Xcc-8004.387.1 0.54 +0.9
371,411 - Xcc-8004.387.1 0.54 +2.9
371,411 - Xcc-8004.387.1 0.54 +2.1
371,506 + Xcc-8004.387.1 0.61 -1.0
371,506 + Xcc-8004.387.1 0.61 -1.5
371,506 + Xcc-8004.387.1 0.61 +2.4
371,506 + Xcc-8004.387.1 0.61 +0.0
371,507 - Xcc-8004.387.1 0.61 -2.3
371,512 + Xcc-8004.387.1 0.61 -2.2
371,512 + Xcc-8004.387.1 0.61 +1.0
371,512 + Xcc-8004.387.1 0.61 -0.8
371,513 - Xcc-8004.387.1 0.61 +0.0
371,513 - Xcc-8004.387.1 0.61 -0.7
371,513 - Xcc-8004.387.1 0.61 -1.3
371,513 - Xcc-8004.387.1 0.61 -2.2
371,542 + Xcc-8004.387.1 0.64 -0.1
371,542 + Xcc-8004.387.1 0.64 +0.5
371,584 + Xcc-8004.387.1 0.67 -1.4
371,585 - Xcc-8004.387.1 0.67 +1.1
371,585 - Xcc-8004.387.1 0.67 +0.5
371,585 - Xcc-8004.387.1 0.67 -2.2
371,585 - Xcc-8004.387.1 0.67 -0.7
371,585 - Xcc-8004.387.1 0.67 -1.5
371,585 - Xcc-8004.387.1 0.67 -0.6
371,585 - Xcc-8004.387.1 0.67 +2.4

Or see this region's nucleotide sequence