Experiment: Xylemvessel barcodes T0L1P3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3750.1 and Xcc-8004.3751.1 are separated by 11 nucleotides Xcc-8004.3751.1 and Xcc-8004.3752.1 overlap by 4 nucleotides
Xcc-8004.3750.1: Xcc-8004.3750.1 - Aspartate aminotransferase (EC 2.6.1.1), at 3,622,044 to 3,623,168
Xcc-8004.3750.1
Xcc-8004.3751.1: Xcc-8004.3751.1 - Short-chain dehydrogenase/reductase SDR, at 3,623,180 to 3,623,971
Xcc-8004.3751.1
Xcc-8004.3752.1: Xcc-8004.3752.1 - Isopenicillin N epimerase (EC 5.1.1.17), at 3,623,968 to 3,625,224
Xcc-8004.3752.1
Position (kb) 3623
3624 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3622.375 kb on - strand, within Xcc-8004.3750.1 at 3622.438 kb on - strand, within Xcc-8004.3750.1 at 3622.597 kb on + strand, within Xcc-8004.3750.1 at 3622.598 kb on - strand, within Xcc-8004.3750.1 at 3622.618 kb on + strand, within Xcc-8004.3750.1 at 3622.619 kb on - strand, within Xcc-8004.3750.1 at 3622.901 kb on - strand, within Xcc-8004.3750.1 at 3622.901 kb on - strand, within Xcc-8004.3750.1 at 3623.009 kb on - strand, within Xcc-8004.3750.1 at 3623.169 kb on - strand at 3623.169 kb on - strand at 3623.169 kb on - strand at 3623.169 kb on - strand at 3623.169 kb on - strand at 3623.172 kb on + strand at 3623.269 kb on - strand, within Xcc-8004.3751.1 at 3623.369 kb on - strand, within Xcc-8004.3751.1 at 3623.408 kb on + strand, within Xcc-8004.3751.1 at 3623.409 kb on - strand, within Xcc-8004.3751.1 at 3623.409 kb on - strand, within Xcc-8004.3751.1 at 3623.656 kb on - strand, within Xcc-8004.3751.1 at 3623.775 kb on - strand, within Xcc-8004.3751.1 at 3623.775 kb on - strand, within Xcc-8004.3751.1 at 3623.775 kb on - strand, within Xcc-8004.3751.1 at 3623.775 kb on - strand, within Xcc-8004.3751.1 at 3624.077 kb on + strand at 3624.078 kb on - strand at 3624.878 kb on + strand, within Xcc-8004.3752.1 at 3624.919 kb on + strand, within Xcc-8004.3752.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3 remove 3,622,375 - Xcc-8004.3750.1 0.29 -1.1 3,622,438 - Xcc-8004.3750.1 0.35 -0.1 3,622,597 + Xcc-8004.3750.1 0.49 -0.2 3,622,598 - Xcc-8004.3750.1 0.49 -2.1 3,622,618 + Xcc-8004.3750.1 0.51 -1.5 3,622,619 - Xcc-8004.3750.1 0.51 +1.7 3,622,901 - Xcc-8004.3750.1 0.76 -0.2 3,622,901 - Xcc-8004.3750.1 0.76 +0.6 3,623,009 - Xcc-8004.3750.1 0.86 -2.3 3,623,169 - +0.3 3,623,169 - +2.8 3,623,169 - +0.2 3,623,169 - -0.5 3,623,169 - -3.2 3,623,172 + -1.1 3,623,269 - Xcc-8004.3751.1 0.11 +1.4 3,623,369 - Xcc-8004.3751.1 0.24 +0.6 3,623,408 + Xcc-8004.3751.1 0.29 +1.3 3,623,409 - Xcc-8004.3751.1 0.29 +1.4 3,623,409 - Xcc-8004.3751.1 0.29 -1.1 3,623,656 - Xcc-8004.3751.1 0.60 +0.3 3,623,775 - Xcc-8004.3751.1 0.75 -2.1 3,623,775 - Xcc-8004.3751.1 0.75 -1.8 3,623,775 - Xcc-8004.3751.1 0.75 +0.3 3,623,775 - Xcc-8004.3751.1 0.75 +0.1 3,624,077 + +1.9 3,624,078 - -2.0 3,624,878 + Xcc-8004.3752.1 0.72 +0.8 3,624,919 + Xcc-8004.3752.1 0.76 +1.4
Or see this region's nucleotide sequence