Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3590.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3589.1 and Xcc-8004.3590.1 are separated by 139 nucleotidesXcc-8004.3590.1 and Xcc-8004.3591.1 overlap by 4 nucleotidesXcc-8004.3591.1 and Xcc-8004.3592.1 are separated by 163 nucleotides Xcc-8004.3589.1: Xcc-8004.3589.1 - S-methylmethionine permease, at 3,478,998 to 3,480,395 Xcc-8004.3589.1 Xcc-8004.3590.1: Xcc-8004.3590.1 - FIG01211013: hypothetical protein, at 3,480,535 to 3,480,750 Xcc-8004.3590.1 Xcc-8004.3591.1: Xcc-8004.3591.1 - FIG01280259: hypothetical protein, at 3,480,747 to 3,481,136 Xcc-8004.3591.1 Xcc-8004.3592.1: Xcc-8004.3592.1 - FIG01210277: hypothetical protein, at 3,481,300 to 3,481,779 Xcc-8004.3592.1 Position (kb) 3480 3481Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3479.907 kb on + strand, within Xcc-8004.3589.1at 3479.907 kb on + strand, within Xcc-8004.3589.1at 3479.907 kb on + strand, within Xcc-8004.3589.1at 3479.907 kb on + strand, within Xcc-8004.3589.1at 3479.907 kb on + strand, within Xcc-8004.3589.1at 3479.907 kb on + strand, within Xcc-8004.3589.1at 3479.907 kb on + strand, within Xcc-8004.3589.1at 3479.908 kb on - strand, within Xcc-8004.3589.1at 3479.908 kb on - strand, within Xcc-8004.3589.1at 3479.908 kb on - strand, within Xcc-8004.3589.1at 3479.908 kb on - strand, within Xcc-8004.3589.1at 3479.908 kb on - strand, within Xcc-8004.3589.1at 3480.031 kb on + strand, within Xcc-8004.3589.1at 3480.031 kb on + strand, within Xcc-8004.3589.1at 3480.032 kb on - strand, within Xcc-8004.3589.1at 3480.032 kb on - strand, within Xcc-8004.3589.1at 3480.032 kb on - strand, within Xcc-8004.3589.1at 3480.032 kb on - strand, within Xcc-8004.3589.1at 3480.032 kb on - strand, within Xcc-8004.3589.1at 3480.032 kb on - strand, within Xcc-8004.3589.1at 3480.094 kb on + strand, within Xcc-8004.3589.1at 3480.094 kb on + strand, within Xcc-8004.3589.1at 3480.094 kb on + strand, within Xcc-8004.3589.1at 3480.095 kb on - strand, within Xcc-8004.3589.1at 3480.095 kb on - strand, within Xcc-8004.3589.1at 3480.112 kb on + strand, within Xcc-8004.3589.1at 3480.133 kb on + strand, within Xcc-8004.3589.1at 3480.134 kb on - strand, within Xcc-8004.3589.1at 3480.145 kb on + strand, within Xcc-8004.3589.1at 3480.145 kb on + strand, within Xcc-8004.3589.1at 3480.145 kb on + strand, within Xcc-8004.3589.1at 3480.146 kb on - strand, within Xcc-8004.3589.1at 3480.146 kb on - strand, within Xcc-8004.3589.1at 3480.146 kb on - strand, within Xcc-8004.3589.1at 3480.146 kb on - strand, within Xcc-8004.3589.1at 3480.146 kb on - strand, within Xcc-8004.3589.1at 3480.146 kb on - strand, within Xcc-8004.3589.1at 3480.211 kb on + strand, within Xcc-8004.3589.1at 3480.211 kb on + strand, within Xcc-8004.3589.1at 3480.211 kb on + strand, within Xcc-8004.3589.1at 3480.211 kb on + strand, within Xcc-8004.3589.1at 3480.211 kb on + strand, within Xcc-8004.3589.1at 3480.211 kb on + strand, within Xcc-8004.3589.1at 3480.211 kb on + strand, within Xcc-8004.3589.1at 3480.211 kb on + strand, within Xcc-8004.3589.1at 3480.212 kb on - strand, within Xcc-8004.3589.1at 3480.212 kb on - strand, within Xcc-8004.3589.1at 3480.212 kb on - strand, within Xcc-8004.3589.1at 3480.212 kb on - strand, within Xcc-8004.3589.1at 3480.235 kb on + strand, within Xcc-8004.3589.1at 3480.236 kb on - strand, within Xcc-8004.3589.1at 3480.277 kb on + strandat 3480.277 kb on + strandat 3480.278 kb on - strandat 3480.278 kb on - strandat 3480.278 kb on - strandat 3480.278 kb on - strandat 3480.278 kb on - strandat 3480.278 kb on - strandat 3480.278 kb on - strandat 3480.556 kb on + strandat 3480.557 kb on - strand, within Xcc-8004.3590.1at 3480.557 kb on - strand, within Xcc-8004.3590.1at 3480.792 kb on + strand, within Xcc-8004.3591.1at 3480.792 kb on + strand, within Xcc-8004.3591.1at 3480.793 kb on - strand, within Xcc-8004.3591.1at 3480.793 kb on - strand, within Xcc-8004.3591.1at 3480.813 kb on + strand, within Xcc-8004.3591.1at 3480.813 kb on + strand, within Xcc-8004.3591.1at 3480.813 kb on + strand, within Xcc-8004.3591.1at 3480.813 kb on + strand, within Xcc-8004.3591.1at 3480.814 kb on - strand, within Xcc-8004.3591.1at 3480.814 kb on - strand, within Xcc-8004.3591.1at 3480.814 kb on - strand, within Xcc-8004.3591.1at 3480.814 kb on - strand, within Xcc-8004.3591.1at 3480.814 kb on - strand, within Xcc-8004.3591.1at 3480.814 kb on - strand, within Xcc-8004.3591.1at 3480.814 kb on - strand, within Xcc-8004.3591.1at 3481.065 kb on + strand, within Xcc-8004.3591.1at 3481.065 kb on + strand, within Xcc-8004.3591.1at 3481.065 kb on + strand, within Xcc-8004.3591.1at 3481.065 kb on + strand, within Xcc-8004.3591.1at 3481.065 kb on + strand, within Xcc-8004.3591.1at 3481.066 kb on - strand, within Xcc-8004.3591.1at 3481.066 kb on - strand, within Xcc-8004.3591.1at 3481.066 kb on - strand, within Xcc-8004.3591.1at 3481.066 kb on - strand, within Xcc-8004.3591.1at 3481.122 kb on + strandat 3481.122 kb on + strandat 3481.122 kb on + strandat 3481.122 kb on + strandat 3481.122 kb on + strandat 3481.122 kb on + strandat 3481.123 kb on - strandat 3481.123 kb on - strandat 3481.123 kb on - strandat 3481.123 kb on - strandat 3481.123 kb on - strandat 3481.263 kb on + strandat 3481.264 kb on - strandat 3481.274 kb on - strandat 3481.275 kb on + strandat 3481.275 kb on + strandat 3481.276 kb on - strandat 3481.276 kb on - strandat 3481.276 kb on - strandat 3481.276 kb on - strandat 3481.675 kb on + strand, within Xcc-8004.3592.1at 3481.675 kb on + strand, within Xcc-8004.3592.1at 3481.675 kb on + strand, within Xcc-8004.3592.1at 3481.675 kb on + strand, within Xcc-8004.3592.1at 3481.675 kb on + strand, within Xcc-8004.3592.1at 3481.675 kb on + strand, within Xcc-8004.3592.1at 3481.675 kb on + strand, within Xcc-8004.3592.1at 3481.675 kb on + strand, within Xcc-8004.3592.1at 3481.675 kb on + strand, within Xcc-8004.3592.1at 3481.675 kb on + strand, within Xcc-8004.3592.1at 3481.675 kb on + strand, within Xcc-8004.3592.1at 3481.675 kb on + strand, within Xcc-8004.3592.1at 3481.676 kb on - strand, within Xcc-8004.3592.1at 3481.676 kb on - strand, within Xcc-8004.3592.1at 3481.676 kb on - strand, within Xcc-8004.3592.1at 3481.676 kb on - strand, within Xcc-8004.3592.1at 3481.729 kb on + strand, within Xcc-8004.3592.1at 3481.729 kb on + strand, within Xcc-8004.3592.1at 3481.729 kb on + strand, within Xcc-8004.3592.1at 3481.729 kb on + strand, within Xcc-8004.3592.1at 3481.729 kb on + strand, within Xcc-8004.3592.1at 3481.730 kb on - strand, within Xcc-8004.3592.1at 3481.730 kb on - strand, within Xcc-8004.3592.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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3,479,907 + Xcc-8004.3589.1 0.65 +2.8
3,479,907 + Xcc-8004.3589.1 0.65 +2.3
3,479,907 + Xcc-8004.3589.1 0.65 -2.0
3,479,907 + Xcc-8004.3589.1 0.65 -3.0
3,479,907 + Xcc-8004.3589.1 0.65 -1.4
3,479,907 + Xcc-8004.3589.1 0.65 -0.5
3,479,907 + Xcc-8004.3589.1 0.65 +1.1
3,479,908 - Xcc-8004.3589.1 0.65 +1.1
3,479,908 - Xcc-8004.3589.1 0.65 -3.6
3,479,908 - Xcc-8004.3589.1 0.65 -2.8
3,479,908 - Xcc-8004.3589.1 0.65 +2.7
3,479,908 - Xcc-8004.3589.1 0.65 +2.0
3,480,031 + Xcc-8004.3589.1 0.74 -3.2
3,480,031 + Xcc-8004.3589.1 0.74 -0.1
3,480,032 - Xcc-8004.3589.1 0.74 -0.6
3,480,032 - Xcc-8004.3589.1 0.74 -0.3
3,480,032 - Xcc-8004.3589.1 0.74 +1.9
3,480,032 - Xcc-8004.3589.1 0.74 -1.2
3,480,032 - Xcc-8004.3589.1 0.74 -0.8
3,480,032 - Xcc-8004.3589.1 0.74 +1.7
3,480,094 + Xcc-8004.3589.1 0.78 +0.2
3,480,094 + Xcc-8004.3589.1 0.78 -1.0
3,480,094 + Xcc-8004.3589.1 0.78 +0.2
3,480,095 - Xcc-8004.3589.1 0.78 -0.0
3,480,095 - Xcc-8004.3589.1 0.78 +0.2
3,480,112 + Xcc-8004.3589.1 0.80 -1.4
3,480,133 + Xcc-8004.3589.1 0.81 +0.2
3,480,134 - Xcc-8004.3589.1 0.81 -0.7
3,480,145 + Xcc-8004.3589.1 0.82 -0.3
3,480,145 + Xcc-8004.3589.1 0.82 +1.9
3,480,145 + Xcc-8004.3589.1 0.82 -0.7
3,480,146 - Xcc-8004.3589.1 0.82 +1.2
3,480,146 - Xcc-8004.3589.1 0.82 +1.2
3,480,146 - Xcc-8004.3589.1 0.82 +0.5
3,480,146 - Xcc-8004.3589.1 0.82 +2.1
3,480,146 - Xcc-8004.3589.1 0.82 +2.9
3,480,146 - Xcc-8004.3589.1 0.82 -0.2
3,480,211 + Xcc-8004.3589.1 0.87 -2.5
3,480,211 + Xcc-8004.3589.1 0.87 +0.7
3,480,211 + Xcc-8004.3589.1 0.87 -2.8
3,480,211 + Xcc-8004.3589.1 0.87 +0.4
3,480,211 + Xcc-8004.3589.1 0.87 +1.1
3,480,211 + Xcc-8004.3589.1 0.87 -2.1
3,480,211 + Xcc-8004.3589.1 0.87 -1.1
3,480,211 + Xcc-8004.3589.1 0.87 -0.7
3,480,212 - Xcc-8004.3589.1 0.87 -2.5
3,480,212 - Xcc-8004.3589.1 0.87 +0.5
3,480,212 - Xcc-8004.3589.1 0.87 +1.4
3,480,212 - Xcc-8004.3589.1 0.87 +2.3
3,480,235 + Xcc-8004.3589.1 0.88 +1.2
3,480,236 - Xcc-8004.3589.1 0.89 +0.5
3,480,277 + -3.1
3,480,277 + +1.2
3,480,278 - +0.8
3,480,278 - +4.0
3,480,278 - +1.5
3,480,278 - +1.9
3,480,278 - -0.7
3,480,278 - -2.3
3,480,278 - -2.0
3,480,556 + -2.6
3,480,557 - Xcc-8004.3590.1 0.10 -0.5
3,480,557 - Xcc-8004.3590.1 0.10 -1.6
3,480,792 + Xcc-8004.3591.1 0.12 +0.4
3,480,792 + Xcc-8004.3591.1 0.12 +0.1
3,480,793 - Xcc-8004.3591.1 0.12 +1.2
3,480,793 - Xcc-8004.3591.1 0.12 +0.5
3,480,813 + Xcc-8004.3591.1 0.17 -0.9
3,480,813 + Xcc-8004.3591.1 0.17 +1.5
3,480,813 + Xcc-8004.3591.1 0.17 +0.7
3,480,813 + Xcc-8004.3591.1 0.17 -2.0
3,480,814 - Xcc-8004.3591.1 0.17 -1.3
3,480,814 - Xcc-8004.3591.1 0.17 +0.2
3,480,814 - Xcc-8004.3591.1 0.17 +0.6
3,480,814 - Xcc-8004.3591.1 0.17 -1.2
3,480,814 - Xcc-8004.3591.1 0.17 +2.9
3,480,814 - Xcc-8004.3591.1 0.17 +0.5
3,480,814 - Xcc-8004.3591.1 0.17 -1.0
3,481,065 + Xcc-8004.3591.1 0.82 -3.2
3,481,065 + Xcc-8004.3591.1 0.82 +1.6
3,481,065 + Xcc-8004.3591.1 0.82 +0.5
3,481,065 + Xcc-8004.3591.1 0.82 +2.2
3,481,065 + Xcc-8004.3591.1 0.82 -2.6
3,481,066 - Xcc-8004.3591.1 0.82 +0.7
3,481,066 - Xcc-8004.3591.1 0.82 -0.3
3,481,066 - Xcc-8004.3591.1 0.82 -2.8
3,481,066 - Xcc-8004.3591.1 0.82 +1.2
3,481,122 + +1.3
3,481,122 + +3.3
3,481,122 + +0.7
3,481,122 + -2.1
3,481,122 + +0.7
3,481,122 + +0.7
3,481,123 - +0.8
3,481,123 - -0.2
3,481,123 - -1.5
3,481,123 - +0.4
3,481,123 - +2.3
3,481,263 + +0.7
3,481,264 - -3.7
3,481,274 - -0.9
3,481,275 + +1.9
3,481,275 + +0.5
3,481,276 - -1.7
3,481,276 - +1.9
3,481,276 - -2.4
3,481,276 - +0.6
3,481,675 + Xcc-8004.3592.1 0.78 -2.0
3,481,675 + Xcc-8004.3592.1 0.78 -2.9
3,481,675 + Xcc-8004.3592.1 0.78 -1.5
3,481,675 + Xcc-8004.3592.1 0.78 +3.5
3,481,675 + Xcc-8004.3592.1 0.78 +1.5
3,481,675 + Xcc-8004.3592.1 0.78 -1.0
3,481,675 + Xcc-8004.3592.1 0.78 -0.3
3,481,675 + Xcc-8004.3592.1 0.78 +0.2
3,481,675 + Xcc-8004.3592.1 0.78 -3.0
3,481,675 + Xcc-8004.3592.1 0.78 -1.7
3,481,675 + Xcc-8004.3592.1 0.78 +1.4
3,481,675 + Xcc-8004.3592.1 0.78 -0.7
3,481,676 - Xcc-8004.3592.1 0.78 -1.1
3,481,676 - Xcc-8004.3592.1 0.78 +0.8
3,481,676 - Xcc-8004.3592.1 0.78 +2.4
3,481,676 - Xcc-8004.3592.1 0.78 +1.8
3,481,729 + Xcc-8004.3592.1 0.89 +0.8
3,481,729 + Xcc-8004.3592.1 0.89 -0.2
3,481,729 + Xcc-8004.3592.1 0.89 -1.7
3,481,729 + Xcc-8004.3592.1 0.89 +2.2
3,481,729 + Xcc-8004.3592.1 0.89 +0.2
3,481,730 - Xcc-8004.3592.1 0.90 -0.0
3,481,730 - Xcc-8004.3592.1 0.90 -0.4

Or see this region's nucleotide sequence