Experiment: Xylemvessel barcodes T0L1P3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.355.1 and Xcc-8004.356.1 are separated by 136 nucleotides Xcc-8004.356.1 and Xcc-8004.357.1 are separated by 57 nucleotides Xcc-8004.357.1 and Xcc-8004.358.1 are separated by 116 nucleotides Xcc-8004.358.1 and Xcc-8004.359.1 overlap by 4 nucleotides
Xcc-8004.355.1: Xcc-8004.355.1 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 340,786 to 342,903
Xcc-8004.355.1
Xcc-8004.356.1: Xcc-8004.356.1 - hypothetical protein, at 343,040 to 343,153
Xcc-8004.356.1
Xcc-8004.357.1: Xcc-8004.357.1 - FIG01210225: hypothetical protein, at 343,211 to 343,684
Xcc-8004.357.1
Xcc-8004.358.1: Xcc-8004.358.1 - 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17), at 343,801 to 344,133
Xcc-8004.358.1
Xcc-8004.359.1: Xcc-8004.359.1 - Nucleoside-diphosphate-sugar epimerases, at 344,130 to 345,551
Xcc-8004.359.1
Position (kb) 343
344 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 342.252 kb on + strand, within Xcc-8004.355.1 at 342.252 kb on + strand, within Xcc-8004.355.1 at 342.252 kb on + strand, within Xcc-8004.355.1 at 342.253 kb on - strand, within Xcc-8004.355.1 at 342.253 kb on - strand, within Xcc-8004.355.1 at 342.253 kb on - strand, within Xcc-8004.355.1 at 342.253 kb on - strand, within Xcc-8004.355.1 at 342.444 kb on + strand, within Xcc-8004.355.1 at 342.468 kb on - strand, within Xcc-8004.355.1 at 343.140 kb on + strand, within Xcc-8004.356.1 at 343.140 kb on + strand, within Xcc-8004.356.1 at 343.141 kb on - strand, within Xcc-8004.356.1 at 343.141 kb on - strand, within Xcc-8004.356.1 at 343.141 kb on - strand, within Xcc-8004.356.1 at 343.141 kb on - strand, within Xcc-8004.356.1 at 343.259 kb on + strand, within Xcc-8004.357.1 at 343.260 kb on - strand, within Xcc-8004.357.1 at 343.617 kb on + strand, within Xcc-8004.357.1 at 343.650 kb on + strand at 343.650 kb on + strand at 343.651 kb on - strand at 343.651 kb on - strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.668 kb on - strand at 343.668 kb on - strand at 343.668 kb on - strand at 343.668 kb on - strand at 343.668 kb on - strand at 343.668 kb on - strand at 343.728 kb on + strand at 343.729 kb on - strand at 343.814 kb on + strand at 343.823 kb on + strand at 343.823 kb on + strand at 343.824 kb on - strand at 343.824 kb on - strand at 343.856 kb on + strand, within Xcc-8004.358.1 at 343.873 kb on + strand, within Xcc-8004.358.1 at 343.874 kb on - strand, within Xcc-8004.358.1 at 343.874 kb on - strand, within Xcc-8004.358.1 at 344.186 kb on - strand at 344.194 kb on + strand at 344.194 kb on + strand at 344.194 kb on + strand at 344.194 kb on + strand at 344.194 kb on + strand at 344.195 kb on - strand at 344.195 kb on - strand at 344.195 kb on - strand at 344.323 kb on + strand, within Xcc-8004.359.1 at 344.323 kb on + strand, within Xcc-8004.359.1 at 344.323 kb on + strand, within Xcc-8004.359.1 at 344.323 kb on + strand, within Xcc-8004.359.1 at 344.323 kb on + strand, within Xcc-8004.359.1 at 344.324 kb on - strand, within Xcc-8004.359.1 at 344.324 kb on - strand, within Xcc-8004.359.1 at 344.379 kb on + strand, within Xcc-8004.359.1 at 344.380 kb on - strand, within Xcc-8004.359.1 at 344.380 kb on - strand, within Xcc-8004.359.1 at 344.380 kb on - strand, within Xcc-8004.359.1 at 344.380 kb on - strand, within Xcc-8004.359.1 at 344.401 kb on + strand, within Xcc-8004.359.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3 remove 342,252 + Xcc-8004.355.1 0.69 -0.5 342,252 + Xcc-8004.355.1 0.69 -1.2 342,252 + Xcc-8004.355.1 0.69 -0.3 342,253 - Xcc-8004.355.1 0.69 -2.4 342,253 - Xcc-8004.355.1 0.69 -2.1 342,253 - Xcc-8004.355.1 0.69 -1.9 342,253 - Xcc-8004.355.1 0.69 -1.1 342,444 + Xcc-8004.355.1 0.78 +1.5 342,468 - Xcc-8004.355.1 0.79 -1.2 343,140 + Xcc-8004.356.1 0.88 +1.5 343,140 + Xcc-8004.356.1 0.88 -0.7 343,141 - Xcc-8004.356.1 0.89 -2.5 343,141 - Xcc-8004.356.1 0.89 +0.8 343,141 - Xcc-8004.356.1 0.89 -0.7 343,141 - Xcc-8004.356.1 0.89 -1.3 343,259 + Xcc-8004.357.1 0.10 -2.7 343,260 - Xcc-8004.357.1 0.10 -0.5 343,617 + Xcc-8004.357.1 0.86 -1.3 343,650 + -1.5 343,650 + +1.8 343,651 - -0.3 343,651 - +1.7 343,667 + +0.7 343,667 + +2.1 343,667 + +0.4 343,668 - +0.6 343,668 - +2.3 343,668 - -1.5 343,668 - +1.4 343,668 - -0.3 343,668 - +2.8 343,728 + -1.4 343,729 - +3.7 343,814 + -1.7 343,823 + -3.0 343,823 + +2.2 343,824 - +1.0 343,824 - -2.1 343,856 + Xcc-8004.358.1 0.17 +0.3 343,873 + Xcc-8004.358.1 0.22 -1.3 343,874 - Xcc-8004.358.1 0.22 +1.2 343,874 - Xcc-8004.358.1 0.22 -1.7 344,186 - +0.9 344,194 + -1.8 344,194 + +0.3 344,194 + +0.5 344,194 + -0.3 344,194 + +1.9 344,195 - -1.6 344,195 - +2.4 344,195 - -0.9 344,323 + Xcc-8004.359.1 0.14 +0.0 344,323 + Xcc-8004.359.1 0.14 +2.3 344,323 + Xcc-8004.359.1 0.14 -0.1 344,323 + Xcc-8004.359.1 0.14 -2.0 344,323 + Xcc-8004.359.1 0.14 +0.5 344,324 - Xcc-8004.359.1 0.14 +0.0 344,324 - Xcc-8004.359.1 0.14 +3.4 344,379 + Xcc-8004.359.1 0.18 +0.6 344,380 - Xcc-8004.359.1 0.18 +1.0 344,380 - Xcc-8004.359.1 0.18 -3.2 344,380 - Xcc-8004.359.1 0.18 -0.7 344,380 - Xcc-8004.359.1 0.18 -1.1 344,401 + Xcc-8004.359.1 0.19 -0.1
Or see this region's nucleotide sequence