Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2923.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2921.1 and Xcc-8004.2922.1 are separated by 74 nucleotidesXcc-8004.2922.1 and Xcc-8004.2923.1 are separated by 76 nucleotidesXcc-8004.2923.1 and Xcc-8004.2924.1 are separated by 103 nucleotidesXcc-8004.2924.1 and Xcc-8004.2925.1 are separated by 100 nucleotides Xcc-8004.2921.1: Xcc-8004.2921.1 - ferrous iron transport protein, at 2,846,489 to 2,846,779 Xcc-8004.2921.1 Xcc-8004.2922.1: Xcc-8004.2922.1 - Methylglutaconyl-CoA hydratase (EC 4.2.1.18), at 2,846,854 to 2,847,651 Xcc-8004.2922.1 Xcc-8004.2923.1: Xcc-8004.2923.1 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 2,847,728 to 2,848,624 Xcc-8004.2923.1 Xcc-8004.2924.1: Xcc-8004.2924.1 - Short-chain dehydrogenase/reductase SDR, at 2,848,728 to 2,849,498 Xcc-8004.2924.1 Xcc-8004.2925.1: Xcc-8004.2925.1 - Translation elongation factor P-related protein, at 2,849,599 to 2,850,165 Xcc-8004.2925.1 Position (kb) 2847 2848 2849Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2846.774 kb on + strandat 2846.775 kb on - strandat 2846.817 kb on + strandat 2846.817 kb on + strandat 2846.818 kb on - strandat 2846.818 kb on - strandat 2846.818 kb on - strandat 2846.898 kb on + strandat 2846.899 kb on - strandat 2847.142 kb on + strand, within Xcc-8004.2922.1at 2847.234 kb on + strand, within Xcc-8004.2922.1at 2847.298 kb on + strand, within Xcc-8004.2922.1at 2847.298 kb on + strand, within Xcc-8004.2922.1at 2847.298 kb on + strand, within Xcc-8004.2922.1at 2847.299 kb on - strand, within Xcc-8004.2922.1at 2847.299 kb on - strand, within Xcc-8004.2922.1at 2847.663 kb on + strandat 2847.663 kb on + strandat 2847.663 kb on + strandat 2847.663 kb on + strandat 2847.663 kb on + strandat 2847.663 kb on + strandat 2847.663 kb on + strandat 2847.664 kb on - strandat 2847.664 kb on - strandat 2847.664 kb on - strandat 2847.664 kb on - strandat 2847.664 kb on - strandat 2847.664 kb on - strandat 2847.667 kb on + strandat 2847.667 kb on + strandat 2847.667 kb on + strandat 2847.667 kb on + strandat 2847.667 kb on + strandat 2847.668 kb on - strandat 2847.668 kb on - strandat 2847.668 kb on - strandat 2847.741 kb on + strandat 2847.741 kb on + strandat 2847.742 kb on - strandat 2847.980 kb on + strand, within Xcc-8004.2923.1at 2847.980 kb on + strand, within Xcc-8004.2923.1at 2847.980 kb on + strand, within Xcc-8004.2923.1at 2847.980 kb on + strand, within Xcc-8004.2923.1at 2847.980 kb on + strand, within Xcc-8004.2923.1at 2847.980 kb on + strand, within Xcc-8004.2923.1at 2847.980 kb on + strand, within Xcc-8004.2923.1at 2847.980 kb on + strand, within Xcc-8004.2923.1at 2847.981 kb on - strand, within Xcc-8004.2923.1at 2847.981 kb on - strand, within Xcc-8004.2923.1at 2847.981 kb on - strand, within Xcc-8004.2923.1at 2847.981 kb on - strand, within Xcc-8004.2923.1at 2848.057 kb on + strand, within Xcc-8004.2923.1at 2848.057 kb on + strand, within Xcc-8004.2923.1at 2848.057 kb on + strand, within Xcc-8004.2923.1at 2848.058 kb on - strand, within Xcc-8004.2923.1at 2848.058 kb on - strand, within Xcc-8004.2923.1at 2848.058 kb on - strand, within Xcc-8004.2923.1at 2848.058 kb on - strand, within Xcc-8004.2923.1at 2848.058 kb on - strand, within Xcc-8004.2923.1at 2848.058 kb on - strand, within Xcc-8004.2923.1at 2848.058 kb on - strand, within Xcc-8004.2923.1at 2848.058 kb on - strand, within Xcc-8004.2923.1at 2848.143 kb on - strand, within Xcc-8004.2923.1at 2848.143 kb on - strand, within Xcc-8004.2923.1at 2848.220 kb on + strand, within Xcc-8004.2923.1at 2848.220 kb on + strand, within Xcc-8004.2923.1at 2848.235 kb on + strand, within Xcc-8004.2923.1at 2848.235 kb on + strand, within Xcc-8004.2923.1at 2848.235 kb on + strand, within Xcc-8004.2923.1at 2848.236 kb on - strand, within Xcc-8004.2923.1at 2848.355 kb on + strand, within Xcc-8004.2923.1at 2848.355 kb on + strand, within Xcc-8004.2923.1at 2848.355 kb on + strand, within Xcc-8004.2923.1at 2848.355 kb on + strand, within Xcc-8004.2923.1at 2848.355 kb on + strand, within Xcc-8004.2923.1at 2848.356 kb on - strand, within Xcc-8004.2923.1at 2848.356 kb on - strand, within Xcc-8004.2923.1at 2848.356 kb on - strand, within Xcc-8004.2923.1at 2848.356 kb on - strand, within Xcc-8004.2923.1at 2848.356 kb on - strand, within Xcc-8004.2923.1at 2848.490 kb on + strand, within Xcc-8004.2923.1at 2848.490 kb on + strand, within Xcc-8004.2923.1at 2848.490 kb on + strand, within Xcc-8004.2923.1at 2848.490 kb on + strand, within Xcc-8004.2923.1at 2848.490 kb on + strand, within Xcc-8004.2923.1at 2848.490 kb on + strand, within Xcc-8004.2923.1at 2848.490 kb on + strand, within Xcc-8004.2923.1at 2848.490 kb on + strand, within Xcc-8004.2923.1at 2848.491 kb on - strand, within Xcc-8004.2923.1at 2848.491 kb on - strand, within Xcc-8004.2923.1at 2848.491 kb on - strand, within Xcc-8004.2923.1at 2848.491 kb on - strand, within Xcc-8004.2923.1at 2848.491 kb on - strand, within Xcc-8004.2923.1at 2848.491 kb on - strand, within Xcc-8004.2923.1at 2848.491 kb on - strand, within Xcc-8004.2923.1at 2848.674 kb on - strandat 2848.893 kb on + strand, within Xcc-8004.2924.1at 2848.893 kb on + strand, within Xcc-8004.2924.1at 2848.893 kb on + strand, within Xcc-8004.2924.1at 2848.893 kb on + strand, within Xcc-8004.2924.1at 2848.894 kb on - strand, within Xcc-8004.2924.1at 2849.184 kb on + strand, within Xcc-8004.2924.1at 2849.184 kb on + strand, within Xcc-8004.2924.1at 2849.185 kb on - strand, within Xcc-8004.2924.1at 2849.185 kb on - strand, within Xcc-8004.2924.1at 2849.185 kb on - strand, within Xcc-8004.2924.1at 2849.185 kb on - strand, within Xcc-8004.2924.1at 2849.211 kb on + strand, within Xcc-8004.2924.1at 2849.212 kb on - strand, within Xcc-8004.2924.1at 2849.212 kb on - strand, within Xcc-8004.2924.1at 2849.406 kb on + strand, within Xcc-8004.2924.1at 2849.442 kb on + strandat 2849.442 kb on + strandat 2849.443 kb on - strandat 2849.496 kb on + strandat 2849.497 kb on - strandat 2849.497 kb on - strandat 2849.497 kb on - strandat 2849.497 kb on - strandat 2849.497 kb on - strandat 2849.497 kb on - strandat 2849.608 kb on - strandat 2849.608 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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2,846,774 + -1.5
2,846,775 - -3.0
2,846,817 + -0.9
2,846,817 + +2.0
2,846,818 - +0.0
2,846,818 - -1.3
2,846,818 - -0.4
2,846,898 + +0.3
2,846,899 - -0.5
2,847,142 + Xcc-8004.2922.1 0.36 +0.3
2,847,234 + Xcc-8004.2922.1 0.48 +0.7
2,847,298 + Xcc-8004.2922.1 0.56 -0.9
2,847,298 + Xcc-8004.2922.1 0.56 -0.0
2,847,298 + Xcc-8004.2922.1 0.56 -1.3
2,847,299 - Xcc-8004.2922.1 0.56 -0.7
2,847,299 - Xcc-8004.2922.1 0.56 -0.3
2,847,663 + -2.1
2,847,663 + -0.9
2,847,663 + -3.5
2,847,663 + -0.0
2,847,663 + -1.9
2,847,663 + +1.7
2,847,663 + -0.1
2,847,664 - -0.3
2,847,664 - -1.1
2,847,664 - +0.8
2,847,664 - -2.5
2,847,664 - -1.2
2,847,664 - -1.6
2,847,667 + +0.4
2,847,667 + +1.2
2,847,667 + +1.1
2,847,667 + -0.2
2,847,667 + -1.1
2,847,668 - +1.4
2,847,668 - -2.9
2,847,668 - -1.5
2,847,741 + -0.3
2,847,741 + -2.1
2,847,742 - -0.9
2,847,980 + Xcc-8004.2923.1 0.28 -1.6
2,847,980 + Xcc-8004.2923.1 0.28 +0.3
2,847,980 + Xcc-8004.2923.1 0.28 -0.7
2,847,980 + Xcc-8004.2923.1 0.28 +0.0
2,847,980 + Xcc-8004.2923.1 0.28 -0.3
2,847,980 + Xcc-8004.2923.1 0.28 -1.4
2,847,980 + Xcc-8004.2923.1 0.28 -0.3
2,847,980 + Xcc-8004.2923.1 0.28 -3.1
2,847,981 - Xcc-8004.2923.1 0.28 -2.3
2,847,981 - Xcc-8004.2923.1 0.28 +2.0
2,847,981 - Xcc-8004.2923.1 0.28 -0.7
2,847,981 - Xcc-8004.2923.1 0.28 -1.4
2,848,057 + Xcc-8004.2923.1 0.37 -1.0
2,848,057 + Xcc-8004.2923.1 0.37 -0.7
2,848,057 + Xcc-8004.2923.1 0.37 -0.6
2,848,058 - Xcc-8004.2923.1 0.37 -0.0
2,848,058 - Xcc-8004.2923.1 0.37 -1.6
2,848,058 - Xcc-8004.2923.1 0.37 +1.9
2,848,058 - Xcc-8004.2923.1 0.37 +0.4
2,848,058 - Xcc-8004.2923.1 0.37 -0.7
2,848,058 - Xcc-8004.2923.1 0.37 -2.2
2,848,058 - Xcc-8004.2923.1 0.37 +1.2
2,848,058 - Xcc-8004.2923.1 0.37 +0.6
2,848,143 - Xcc-8004.2923.1 0.46 -1.9
2,848,143 - Xcc-8004.2923.1 0.46 +0.3
2,848,220 + Xcc-8004.2923.1 0.55 -2.7
2,848,220 + Xcc-8004.2923.1 0.55 -1.3
2,848,235 + Xcc-8004.2923.1 0.57 -2.6
2,848,235 + Xcc-8004.2923.1 0.57 -2.1
2,848,235 + Xcc-8004.2923.1 0.57 -1.4
2,848,236 - Xcc-8004.2923.1 0.57 -2.2
2,848,355 + Xcc-8004.2923.1 0.70 +1.0
2,848,355 + Xcc-8004.2923.1 0.70 +0.3
2,848,355 + Xcc-8004.2923.1 0.70 +0.3
2,848,355 + Xcc-8004.2923.1 0.70 -2.3
2,848,355 + Xcc-8004.2923.1 0.70 -0.9
2,848,356 - Xcc-8004.2923.1 0.70 -0.3
2,848,356 - Xcc-8004.2923.1 0.70 +1.4
2,848,356 - Xcc-8004.2923.1 0.70 -0.0
2,848,356 - Xcc-8004.2923.1 0.70 -0.4
2,848,356 - Xcc-8004.2923.1 0.70 -3.2
2,848,490 + Xcc-8004.2923.1 0.85 +1.7
2,848,490 + Xcc-8004.2923.1 0.85 -1.7
2,848,490 + Xcc-8004.2923.1 0.85 -0.5
2,848,490 + Xcc-8004.2923.1 0.85 -1.9
2,848,490 + Xcc-8004.2923.1 0.85 +0.2
2,848,490 + Xcc-8004.2923.1 0.85 -2.7
2,848,490 + Xcc-8004.2923.1 0.85 -1.2
2,848,490 + Xcc-8004.2923.1 0.85 -1.9
2,848,491 - Xcc-8004.2923.1 0.85 -2.9
2,848,491 - Xcc-8004.2923.1 0.85 -1.2
2,848,491 - Xcc-8004.2923.1 0.85 +0.1
2,848,491 - Xcc-8004.2923.1 0.85 -0.3
2,848,491 - Xcc-8004.2923.1 0.85 -0.5
2,848,491 - Xcc-8004.2923.1 0.85 +1.0
2,848,491 - Xcc-8004.2923.1 0.85 -1.4
2,848,674 - -3.5
2,848,893 + Xcc-8004.2924.1 0.21 +1.0
2,848,893 + Xcc-8004.2924.1 0.21 +0.4
2,848,893 + Xcc-8004.2924.1 0.21 -2.1
2,848,893 + Xcc-8004.2924.1 0.21 -0.5
2,848,894 - Xcc-8004.2924.1 0.22 -1.9
2,849,184 + Xcc-8004.2924.1 0.59 +0.7
2,849,184 + Xcc-8004.2924.1 0.59 -1.4
2,849,185 - Xcc-8004.2924.1 0.59 +1.8
2,849,185 - Xcc-8004.2924.1 0.59 -0.9
2,849,185 - Xcc-8004.2924.1 0.59 +1.8
2,849,185 - Xcc-8004.2924.1 0.59 +2.0
2,849,211 + Xcc-8004.2924.1 0.63 -0.1
2,849,212 - Xcc-8004.2924.1 0.63 -0.3
2,849,212 - Xcc-8004.2924.1 0.63 -1.2
2,849,406 + Xcc-8004.2924.1 0.88 -2.7
2,849,442 + +2.2
2,849,442 + +3.2
2,849,443 - -2.0
2,849,496 + +1.4
2,849,497 - +1.4
2,849,497 - +1.3
2,849,497 - -1.9
2,849,497 - -0.0
2,849,497 - +0.3
2,849,497 - +1.5
2,849,608 - -0.9
2,849,608 - -1.0

Or see this region's nucleotide sequence