Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2920.1

Experiment: Xylemvessel barcodes T0L1P3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes T0L1P3
2,843,683	-				-1.8
2,843,683	-				-2.2
2,843,683	-				-0.7
2,843,683	-				-1.4
2,843,683	-				+0.2
2,843,826	+				-1.7
2,843,826	+				+0.1
2,844,009	+		Xcc-8004.2918.1	0.35	-2.2
2,844,009	+		Xcc-8004.2918.1	0.35	+1.3
2,844,009	+		Xcc-8004.2918.1	0.35	+1.7
2,844,009	+		Xcc-8004.2918.1	0.35	-2.5
2,844,009	+		Xcc-8004.2918.1	0.35	-2.1
2,844,009	+		Xcc-8004.2918.1	0.35	-0.0
2,844,009	+		Xcc-8004.2918.1	0.35	+1.1
2,844,009	+		Xcc-8004.2918.1	0.35	+2.0
2,844,010	-		Xcc-8004.2918.1	0.35	-0.4
2,844,010	-		Xcc-8004.2918.1	0.35	+0.5
2,844,010	-		Xcc-8004.2918.1	0.35	+1.5
2,844,010	-		Xcc-8004.2918.1	0.35	-3.5
2,844,010	-		Xcc-8004.2918.1	0.35	+0.7
2,844,010	-		Xcc-8004.2918.1	0.35	+1.0
2,844,010	-		Xcc-8004.2918.1	0.35	+1.5
2,844,088	-		Xcc-8004.2918.1	0.50	-0.5
2,844,088	-		Xcc-8004.2918.1	0.50	-0.3
2,844,088	-		Xcc-8004.2918.1	0.50	+0.8
2,844,088	-		Xcc-8004.2918.1	0.50	+1.1
2,844,135	+		Xcc-8004.2918.1	0.59	+1.0
2,844,135	+		Xcc-8004.2918.1	0.59	-2.3
2,844,136	-		Xcc-8004.2918.1	0.59	-1.3
2,844,222	+		Xcc-8004.2918.1	0.75	-0.4
2,844,222	+		Xcc-8004.2918.1	0.75	-1.2
2,844,222	+		Xcc-8004.2918.1	0.75	+1.6
2,844,223	-		Xcc-8004.2918.1	0.75	+2.4
2,844,223	-		Xcc-8004.2918.1	0.75	+1.5
2,844,223	-		Xcc-8004.2918.1	0.75	+0.3
2,844,264	+		Xcc-8004.2918.1	0.82	-1.7
2,844,264	+		Xcc-8004.2918.1	0.82	+1.1
2,844,264	+		Xcc-8004.2918.1	0.82	+0.3
2,844,264	+		Xcc-8004.2918.1	0.82	+0.9
2,844,264	+		Xcc-8004.2918.1	0.82	+0.1
2,844,264	+		Xcc-8004.2918.1	0.82	-2.6
2,844,265	-		Xcc-8004.2918.1	0.83	+1.7
2,844,265	-		Xcc-8004.2918.1	0.83	+0.8
2,844,265	-		Xcc-8004.2918.1	0.83	+1.3
2,844,265	-		Xcc-8004.2918.1	0.83	+1.8
2,844,268	+		Xcc-8004.2918.1	0.83	+0.3
2,844,268	+		Xcc-8004.2918.1	0.83	-0.1
2,844,268	+		Xcc-8004.2918.1	0.83	+0.0
2,844,268	+		Xcc-8004.2918.1	0.83	-1.5
2,844,268	+		Xcc-8004.2918.1	0.83	-0.9
2,844,269	-		Xcc-8004.2918.1	0.83	-1.3
2,844,269	-		Xcc-8004.2918.1	0.83	+1.3
2,844,269	-		Xcc-8004.2918.1	0.83	-1.3
2,844,269	-		Xcc-8004.2918.1	0.83	+0.1
2,844,269	-		Xcc-8004.2918.1	0.83	+1.8
2,844,269	-		Xcc-8004.2918.1	0.83	-1.6
2,844,270	+		Xcc-8004.2918.1	0.84	+0.4
2,844,270	+		Xcc-8004.2918.1	0.84	+2.0
2,844,270	+		Xcc-8004.2918.1	0.84	-0.1
2,844,270	+		Xcc-8004.2918.1	0.84	-2.9
2,844,270	+		Xcc-8004.2918.1	0.84	-2.7
2,844,270	+		Xcc-8004.2918.1	0.84	+2.4
2,844,271	-		Xcc-8004.2918.1	0.84	-1.9
2,844,271	-		Xcc-8004.2918.1	0.84	+0.5
2,844,271	-		Xcc-8004.2918.1	0.84	-0.4
2,844,271	-		Xcc-8004.2918.1	0.84	+1.8
2,844,271	-		Xcc-8004.2918.1	0.84	-1.3
2,844,294	-		Xcc-8004.2918.1	0.88	-0.2
2,844,362	+				-1.9
2,844,362	+				+0.1
2,844,363	-				+0.4
2,844,363	-				-2.2
2,844,363	-				+2.7
2,844,612	+				-0.5
2,844,612	+				-1.2
2,844,612	+				-1.5
2,844,612	+				-0.9
2,844,613	-				-1.0
2,844,613	-				-0.3
2,844,613	-				+0.3
2,844,613	-				-0.7
2,844,613	-				-0.0
2,844,664	+				-0.5
2,844,665	-				-1.5
2,844,685	+				+0.9
2,844,686	-				+1.2
2,844,703	+				-1.0
2,844,703	+				+1.4
2,844,784	+				-0.4
2,844,784	+				-0.7
2,844,784	+				-0.0
2,844,784	+				-0.9
2,844,784	+				-1.5
2,844,784	+				-1.0
2,844,784	+				+0.5
2,844,784	+				-1.0
2,844,784	+				-1.2
2,844,784	+				-1.8
2,844,785	-				+1.3
2,844,785	-				-1.0
2,844,785	-				-1.0
2,844,785	-				-0.7
2,844,785	-				-0.5
2,844,790	+				-0.3
2,844,790	+				+0.1
2,844,790	+				-1.8
2,844,791	-				-1.3
2,844,791	-				+0.3
2,844,791	-				-1.2
2,844,791	-				-0.0
2,844,791	-				+0.6
2,844,892	+		Xcc-8004.2920.1	0.14	-0.7
2,844,893	-		Xcc-8004.2920.1	0.14	+0.2
2,844,893	-		Xcc-8004.2920.1	0.14	-0.9
2,845,189	+		Xcc-8004.2920.1	0.30	-1.6
2,845,189	+		Xcc-8004.2920.1	0.30	+2.0
2,845,190	-		Xcc-8004.2920.1	0.30	+2.3
2,845,190	-		Xcc-8004.2920.1	0.30	-2.2
2,845,365	+		Xcc-8004.2920.1	0.39	-2.2
2,845,372	+		Xcc-8004.2920.1	0.40	-1.3
2,845,372	+		Xcc-8004.2920.1	0.40	-1.0
2,845,372	+		Xcc-8004.2920.1	0.40	-1.2
2,845,373	-		Xcc-8004.2920.1	0.40	-1.5
2,845,373	-		Xcc-8004.2920.1	0.40	-0.8
2,845,373	-		Xcc-8004.2920.1	0.40	-0.7
2,845,774	+		Xcc-8004.2920.1	0.61	+0.3
2,845,774	+		Xcc-8004.2920.1	0.61	-1.6
2,845,774	+		Xcc-8004.2920.1	0.61	-0.5
2,845,774	+		Xcc-8004.2920.1	0.61	-0.7
2,845,774	+		Xcc-8004.2920.1	0.61	-0.3
2,845,775	-		Xcc-8004.2920.1	0.61	-1.3
2,845,775	-		Xcc-8004.2920.1	0.61	-0.7
2,845,775	-		Xcc-8004.2920.1	0.61	+0.7
2,845,775	-		Xcc-8004.2920.1	0.61	-0.0
2,845,927	+		Xcc-8004.2920.1	0.70	-2.0
2,845,927	+		Xcc-8004.2920.1	0.70	+1.0
2,845,928	-		Xcc-8004.2920.1	0.70	-1.6
2,845,928	-		Xcc-8004.2920.1	0.70	-0.2
2,845,928	-		Xcc-8004.2920.1	0.70	+0.7
2,845,928	-		Xcc-8004.2920.1	0.70	-1.8
2,845,928	-		Xcc-8004.2920.1	0.70	+0.5
2,845,928	-		Xcc-8004.2920.1	0.70	+0.2
2,845,928	-		Xcc-8004.2920.1	0.70	-1.9
2,845,928	-		Xcc-8004.2920.1	0.70	+0.5
2,845,928	-		Xcc-8004.2920.1	0.70	-3.0
2,845,928	-		Xcc-8004.2920.1	0.70	-2.2
2,845,928	-		Xcc-8004.2920.1	0.70	+1.0
2,845,928	-		Xcc-8004.2920.1	0.70	+1.5
2,846,203	+		Xcc-8004.2920.1	0.84	-0.5
2,846,203	+		Xcc-8004.2920.1	0.84	-1.0
2,846,203	+		Xcc-8004.2920.1	0.84	+1.6
2,846,203	+		Xcc-8004.2920.1	0.84	-1.9
2,846,204	-		Xcc-8004.2920.1	0.84	-1.2
2,846,204	-		Xcc-8004.2920.1	0.84	-1.4
2,846,204	-		Xcc-8004.2920.1	0.84	-0.5
2,846,204	-		Xcc-8004.2920.1	0.84	-1.4
2,846,204	-		Xcc-8004.2920.1	0.84	+1.1
2,846,204	-		Xcc-8004.2920.1	0.84	-0.3
2,846,204	-		Xcc-8004.2920.1	0.84	+0.3
2,846,296	+		Xcc-8004.2920.1	0.89	-0.0
2,846,296	+		Xcc-8004.2920.1	0.89	-0.9
2,846,384	-				-0.7
2,846,384	-				+0.7
2,846,384	-				+0.6
2,846,384	-				+1.5
2,846,557	+		Xcc-8004.2921.1	0.23	-1.7
2,846,557	+		Xcc-8004.2921.1	0.23	-0.9
2,846,558	-		Xcc-8004.2921.1	0.24	-1.8
2,846,559	+		Xcc-8004.2921.1	0.24	-0.0
2,846,559	+		Xcc-8004.2921.1	0.24	-0.5
2,846,559	+		Xcc-8004.2921.1	0.24	-0.9
2,846,615	+		Xcc-8004.2921.1	0.43	-1.7
2,846,615	+		Xcc-8004.2921.1	0.43	-1.4
2,846,639	+		Xcc-8004.2921.1	0.52	-2.0
2,846,640	-		Xcc-8004.2921.1	0.52	-1.5
2,846,774	+				-1.5
2,846,775	-				-3.0
2,846,817	+				-0.9
2,846,817	+				+2.0
2,846,818	-				+0.0
2,846,818	-				-1.3
2,846,818	-				-0.4
2,846,898	+				+0.3
2,846,899	-				-0.5
2,847,142	+		Xcc-8004.2922.1	0.36	+0.3
2,847,234	+		Xcc-8004.2922.1	0.48	+0.7
2,847,298	+		Xcc-8004.2922.1	0.56	-0.9
2,847,298	+		Xcc-8004.2922.1	0.56	-0.0
2,847,298	+		Xcc-8004.2922.1	0.56	-1.3
2,847,299	-		Xcc-8004.2922.1	0.56	-0.7
2,847,299	-		Xcc-8004.2922.1	0.56	-0.3