Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2760.1

Experiment: Xylemvessel barcodes T0L1P3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes T0L1P3
2,678,023	+				-2.6
2,678,023	+				-0.8
2,678,160	+		Xcc-8004.2759.1	0.21	+1.7
2,678,160	+		Xcc-8004.2759.1	0.21	+2.8
2,678,160	+		Xcc-8004.2759.1	0.21	-1.7
2,678,161	-		Xcc-8004.2759.1	0.21	-2.7
2,678,161	-		Xcc-8004.2759.1	0.21	-0.5
2,678,161	-		Xcc-8004.2759.1	0.21	+1.3
2,678,161	-		Xcc-8004.2759.1	0.21	+1.1
2,678,161	-		Xcc-8004.2759.1	0.21	-2.7
2,678,161	-		Xcc-8004.2759.1	0.21	+1.5
2,678,195	+		Xcc-8004.2759.1	0.26	-1.4
2,678,195	+		Xcc-8004.2759.1	0.26	+1.6
2,678,195	+		Xcc-8004.2759.1	0.26	+1.1
2,678,195	+		Xcc-8004.2759.1	0.26	-1.7
2,678,195	+		Xcc-8004.2759.1	0.26	-1.7
2,678,196	-		Xcc-8004.2759.1	0.27	-1.3
2,678,196	-		Xcc-8004.2759.1	0.27	+0.5
2,678,196	-		Xcc-8004.2759.1	0.27	-0.2
2,678,196	-		Xcc-8004.2759.1	0.27	+3.0
2,678,196	-		Xcc-8004.2759.1	0.27	+2.6
2,678,196	-		Xcc-8004.2759.1	0.27	-1.5
2,678,196	-		Xcc-8004.2759.1	0.27	+1.1
2,678,243	+		Xcc-8004.2759.1	0.34	-0.5
2,678,243	+		Xcc-8004.2759.1	0.34	+2.3
2,678,243	+		Xcc-8004.2759.1	0.34	-0.3
2,678,243	+		Xcc-8004.2759.1	0.34	-0.2
2,678,243	+		Xcc-8004.2759.1	0.34	+0.7
2,678,243	+		Xcc-8004.2759.1	0.34	+1.7
2,678,244	-		Xcc-8004.2759.1	0.34	-1.6
2,678,244	-		Xcc-8004.2759.1	0.34	-0.1
2,678,244	-		Xcc-8004.2759.1	0.34	-1.9
2,678,244	-		Xcc-8004.2759.1	0.34	+1.3
2,678,244	-		Xcc-8004.2759.1	0.34	+1.3
2,678,244	-		Xcc-8004.2759.1	0.34	+1.5
2,678,244	-		Xcc-8004.2759.1	0.34	+2.3
2,678,435	+		Xcc-8004.2759.1	0.65	+1.0
2,678,435	+		Xcc-8004.2759.1	0.65	-0.7
2,678,435	+		Xcc-8004.2759.1	0.65	+3.1
2,678,435	+		Xcc-8004.2759.1	0.65	-0.6
2,678,435	+		Xcc-8004.2759.1	0.65	-1.0
2,678,435	+		Xcc-8004.2759.1	0.65	-1.0
2,678,436	-		Xcc-8004.2759.1	0.66	+1.3
2,678,436	-		Xcc-8004.2759.1	0.66	-2.2
2,678,436	-		Xcc-8004.2759.1	0.66	-1.7
2,678,436	-		Xcc-8004.2759.1	0.66	-1.3
2,678,436	-		Xcc-8004.2759.1	0.66	+1.1
2,678,436	-		Xcc-8004.2759.1	0.66	-2.4
2,678,436	-		Xcc-8004.2759.1	0.66	-0.5
2,678,492	+		Xcc-8004.2759.1	0.75	-3.0
2,678,492	+		Xcc-8004.2759.1	0.75	-2.2
2,678,493	-		Xcc-8004.2759.1	0.75	-1.3
2,678,493	-		Xcc-8004.2759.1	0.75	+1.3
2,678,745	-				-0.6
2,678,760	-				+2.6
2,678,802	+				+1.7
2,678,802	+				+0.8
2,678,802	+				+0.1
2,678,802	+				+0.9
2,678,802	+				-0.7
2,678,802	+				+0.0
2,678,802	+				+0.3
2,678,802	+				+0.6
2,678,802	+				-2.2
2,678,802	+				+2.0
2,678,802	+				-0.2
2,678,802	+				-0.3
2,678,802	+				-2.4
2,678,802	+				-0.6
2,678,802	+				+0.5
2,678,802	+				+3.2
2,678,802	+				-1.2
2,678,802	+				+1.5
2,678,802	+				+1.2
2,678,803	-				-0.1
2,678,803	-				-1.5
2,678,803	-				+1.7
2,678,803	-				-1.2
2,678,803	-				-0.9
2,678,803	-				+0.5
2,678,803	-				-0.0
2,678,803	-				+0.1
2,678,803	-				+0.5
2,678,803	-				+0.0
2,678,803	-				-0.2
2,678,803	-				-3.1
2,678,803	-				-0.0
2,678,803	-				-0.7
2,678,803	-				+1.9
2,678,803	-				-1.3
2,678,803	-				+0.5
2,678,803	-				+0.6
2,678,803	-				-1.1
2,678,803	-				-0.2
2,678,816	+				-1.8
2,678,816	+				-2.6
2,678,816	+				+1.4
2,678,816	+				-0.3
2,678,817	-				-1.2
2,678,817	-				+1.1
2,678,819	-				-2.0
2,678,952	+		Xcc-8004.2760.1	0.19	-2.6
2,678,952	+		Xcc-8004.2760.1	0.19	-0.6
2,678,952	+		Xcc-8004.2760.1	0.19	+1.2
2,678,953	-		Xcc-8004.2760.1	0.19	+0.4
2,678,953	-		Xcc-8004.2760.1	0.19	+1.1
2,678,953	-		Xcc-8004.2760.1	0.19	+1.4
2,678,953	-		Xcc-8004.2760.1	0.19	-2.8
2,678,953	-		Xcc-8004.2760.1	0.19	-2.0
2,678,953	-		Xcc-8004.2760.1	0.19	-0.5
2,678,953	-		Xcc-8004.2760.1	0.19	-3.4
2,678,953	-		Xcc-8004.2760.1	0.19	+1.3
2,678,953	-		Xcc-8004.2760.1	0.19	-0.5
2,678,969	+		Xcc-8004.2760.1	0.20	-2.2
2,678,969	+		Xcc-8004.2760.1	0.20	-0.7
2,679,026	+		Xcc-8004.2760.1	0.24	-0.3
2,679,026	+		Xcc-8004.2760.1	0.24	-0.4
2,679,026	+		Xcc-8004.2760.1	0.24	+1.1
2,679,027	-		Xcc-8004.2760.1	0.24	+0.6
2,679,027	-		Xcc-8004.2760.1	0.24	+0.1
2,679,491	+		Xcc-8004.2760.1	0.61	+2.1
2,679,491	+		Xcc-8004.2760.1	0.61	-2.0
2,679,492	-		Xcc-8004.2760.1	0.61	-0.6
2,679,551	-		Xcc-8004.2760.1	0.66	+0.9
2,679,551	-		Xcc-8004.2760.1	0.66	-2.2
2,679,856	-		Xcc-8004.2760.1	0.89	+0.1
2,679,856	-		Xcc-8004.2760.1	0.89	+0.6
2,680,003	+				+0.8
2,680,003	+				-1.6
2,680,004	-				-1.0
2,680,004	-				+1.3
2,680,004	-				-2.6
2,680,200	+		Xcc-8004.2761.1	0.48	-0.9
2,680,201	-		Xcc-8004.2761.1	0.49	-2.5
2,680,256	+		Xcc-8004.2761.1	0.65	+1.5
2,680,257	-		Xcc-8004.2761.1	0.66	+2.7
2,680,326	+		Xcc-8004.2761.1	0.87	-2.1
2,680,373	+				-1.2
2,680,374	-				-0.8
2,680,456	+				+0.3
2,680,457	-				-1.4
2,680,457	-				+0.6
2,680,539	+				-0.2
2,680,539	+				+0.8
2,680,539	+				-3.3
2,680,540	-				+0.4
2,680,540	-				-0.0
2,680,548	+				+0.7
2,680,549	-				-2.4
2,680,549	-				-1.8
2,680,549	-				-0.4
2,680,560	+				+0.6
2,680,561	-				+0.3
2,680,561	-				-2.1
2,680,595	+				+0.0
2,680,596	-				-0.1
2,680,620	+				-1.4
2,680,620	+				+1.7
2,680,621	-				-0.4
2,680,621	-				+0.3
2,680,621	-				-0.8
2,680,621	-				-0.7
2,680,624	+				-0.1
2,680,624	+				-1.6
2,680,624	+				-3.3
2,680,625	-				-0.8
2,680,625	-				-1.0
2,680,625	-				-1.8
2,680,625	-				-2.1
2,680,625	-				+0.5
2,680,625	-				+1.9
2,680,625	-				+1.3
2,680,625	-				-0.3
2,680,722	+				-2.3
2,680,810	+		Xcc-8004.2762.1	0.26	-2.2
2,680,810	+		Xcc-8004.2762.1	0.26	-0.2
2,680,811	-		Xcc-8004.2762.1	0.27	-2.4
2,680,811	-		Xcc-8004.2762.1	0.27	+1.5
2,680,811	-		Xcc-8004.2762.1	0.27	-2.0
2,680,811	-		Xcc-8004.2762.1	0.27	+1.0
2,680,830	+		Xcc-8004.2762.1	0.31	+1.7
2,680,830	+		Xcc-8004.2762.1	0.31	+1.1
2,680,830	+		Xcc-8004.2762.1	0.31	-0.0
2,680,922	-		Xcc-8004.2762.1	0.54	+0.1
2,680,922	-		Xcc-8004.2762.1	0.54	-1.5
2,680,922	-		Xcc-8004.2762.1	0.54	+0.3
2,680,922	-		Xcc-8004.2762.1	0.54	-1.3
2,680,989	+		Xcc-8004.2762.1	0.71	-0.6
2,680,989	+		Xcc-8004.2762.1	0.71	-0.5