Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2294.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2293.1 and Xcc-8004.2294.1 are separated by 106 nucleotidesXcc-8004.2294.1 and Xcc-8004.2296.1 are separated by 236 nucleotides Xcc-8004.2293.1: Xcc-8004.2293.1 - Pectinesterase (EC 3.1.1.11), at 2,245,568 to 2,246,773 Xcc-8004.2293.1 Xcc-8004.2294.1: Xcc-8004.2294.1 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 2,246,880 to 2,247,668 Xcc-8004.2294.1 Xcc-8004.2296.1: Xcc-8004.2296.1 - FIG01211180: hypothetical protein, at 2,247,905 to 2,248,810 Xcc-8004.2296.1 Position (kb) 2246 2247 2248Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2245.920 kb on + strand, within Xcc-8004.2293.1at 2245.920 kb on + strand, within Xcc-8004.2293.1at 2245.921 kb on - strand, within Xcc-8004.2293.1at 2245.921 kb on - strand, within Xcc-8004.2293.1at 2246.040 kb on + strand, within Xcc-8004.2293.1at 2246.175 kb on + strand, within Xcc-8004.2293.1at 2246.175 kb on + strand, within Xcc-8004.2293.1at 2246.175 kb on + strand, within Xcc-8004.2293.1at 2246.190 kb on + strand, within Xcc-8004.2293.1at 2246.190 kb on + strand, within Xcc-8004.2293.1at 2246.190 kb on + strand, within Xcc-8004.2293.1at 2246.190 kb on + strand, within Xcc-8004.2293.1at 2246.191 kb on - strand, within Xcc-8004.2293.1at 2246.191 kb on - strand, within Xcc-8004.2293.1at 2246.194 kb on + strand, within Xcc-8004.2293.1at 2246.195 kb on - strand, within Xcc-8004.2293.1at 2246.195 kb on - strand, within Xcc-8004.2293.1at 2246.237 kb on + strand, within Xcc-8004.2293.1at 2246.237 kb on + strand, within Xcc-8004.2293.1at 2246.237 kb on + strand, within Xcc-8004.2293.1at 2246.237 kb on + strand, within Xcc-8004.2293.1at 2246.238 kb on - strand, within Xcc-8004.2293.1at 2246.238 kb on - strand, within Xcc-8004.2293.1at 2246.346 kb on + strand, within Xcc-8004.2293.1at 2246.346 kb on + strand, within Xcc-8004.2293.1at 2246.433 kb on + strand, within Xcc-8004.2293.1at 2246.433 kb on + strand, within Xcc-8004.2293.1at 2246.434 kb on - strand, within Xcc-8004.2293.1at 2246.457 kb on + strand, within Xcc-8004.2293.1at 2246.457 kb on + strand, within Xcc-8004.2293.1at 2246.457 kb on + strand, within Xcc-8004.2293.1at 2246.644 kb on + strand, within Xcc-8004.2293.1at 2246.644 kb on + strand, within Xcc-8004.2293.1at 2246.644 kb on + strand, within Xcc-8004.2293.1at 2246.644 kb on + strand, within Xcc-8004.2293.1at 2246.645 kb on - strand, within Xcc-8004.2293.1at 2246.645 kb on - strand, within Xcc-8004.2293.1at 2246.645 kb on - strand, within Xcc-8004.2293.1at 2246.645 kb on - strand, within Xcc-8004.2293.1at 2246.646 kb on + strand, within Xcc-8004.2293.1at 2246.646 kb on + strand, within Xcc-8004.2293.1at 2246.646 kb on + strand, within Xcc-8004.2293.1at 2246.647 kb on - strand, within Xcc-8004.2293.1at 2246.647 kb on - strand, within Xcc-8004.2293.1at 2246.647 kb on - strand, within Xcc-8004.2293.1at 2246.647 kb on - strand, within Xcc-8004.2293.1at 2246.647 kb on - strand, within Xcc-8004.2293.1at 2246.647 kb on - strand, within Xcc-8004.2293.1at 2246.647 kb on - strand, within Xcc-8004.2293.1at 2246.647 kb on - strand, within Xcc-8004.2293.1at 2246.925 kb on + strandat 2246.925 kb on + strandat 2247.165 kb on - strand, within Xcc-8004.2294.1at 2247.332 kb on + strand, within Xcc-8004.2294.1at 2247.332 kb on + strand, within Xcc-8004.2294.1at 2247.332 kb on + strand, within Xcc-8004.2294.1at 2247.333 kb on - strand, within Xcc-8004.2294.1at 2247.333 kb on - strand, within Xcc-8004.2294.1at 2247.333 kb on - strand, within Xcc-8004.2294.1at 2247.486 kb on + strand, within Xcc-8004.2294.1at 2247.487 kb on - strand, within Xcc-8004.2294.1at 2247.487 kb on - strand, within Xcc-8004.2294.1at 2247.633 kb on + strandat 2247.696 kb on - strandat 2247.743 kb on + strandat 2247.743 kb on + strandat 2247.744 kb on - strandat 2247.744 kb on - strandat 2247.744 kb on - strandat 2247.744 kb on - strandat 2247.751 kb on + strandat 2247.751 kb on + strandat 2247.751 kb on + strandat 2247.751 kb on + strandat 2247.752 kb on - strandat 2247.752 kb on - strandat 2247.752 kb on - strandat 2247.752 kb on - strandat 2247.752 kb on - strandat 2247.752 kb on - strandat 2247.753 kb on + strandat 2247.753 kb on + strandat 2247.753 kb on + strandat 2247.753 kb on + strandat 2247.753 kb on + strandat 2247.753 kb on + strandat 2247.753 kb on + strandat 2247.753 kb on + strandat 2247.753 kb on + strandat 2247.753 kb on + strandat 2247.753 kb on + strandat 2247.753 kb on + strandat 2247.754 kb on - strandat 2247.754 kb on - strandat 2247.754 kb on - strandat 2247.754 kb on - strandat 2247.754 kb on - strandat 2247.755 kb on + strandat 2247.755 kb on + strandat 2247.755 kb on + strandat 2247.755 kb on + strandat 2247.755 kb on + strandat 2247.755 kb on + strandat 2247.755 kb on + strandat 2247.755 kb on + strandat 2247.756 kb on - strandat 2247.756 kb on - strandat 2247.756 kb on - strandat 2247.756 kb on - strandat 2247.756 kb on - strandat 2247.756 kb on - strandat 2247.756 kb on - strandat 2248.126 kb on - strand, within Xcc-8004.2296.1at 2248.400 kb on + strand, within Xcc-8004.2296.1at 2248.400 kb on + strand, within Xcc-8004.2296.1at 2248.400 kb on + strand, within Xcc-8004.2296.1at 2248.400 kb on + strand, within Xcc-8004.2296.1at 2248.401 kb on - strand, within Xcc-8004.2296.1at 2248.401 kb on - strand, within Xcc-8004.2296.1at 2248.401 kb on - strand, within Xcc-8004.2296.1at 2248.401 kb on - strand, within Xcc-8004.2296.1at 2248.452 kb on + strand, within Xcc-8004.2296.1at 2248.452 kb on + strand, within Xcc-8004.2296.1at 2248.452 kb on + strand, within Xcc-8004.2296.1at 2248.453 kb on - strand, within Xcc-8004.2296.1at 2248.565 kb on + strand, within Xcc-8004.2296.1at 2248.566 kb on - strand, within Xcc-8004.2296.1at 2248.571 kb on + strand, within Xcc-8004.2296.1at 2248.571 kb on + strand, within Xcc-8004.2296.1at 2248.572 kb on - strand, within Xcc-8004.2296.1at 2248.599 kb on - strand, within Xcc-8004.2296.1at 2248.622 kb on + strand, within Xcc-8004.2296.1at 2248.622 kb on + strand, within Xcc-8004.2296.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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2,245,920 + Xcc-8004.2293.1 0.29 +0.0
2,245,920 + Xcc-8004.2293.1 0.29 +3.4
2,245,921 - Xcc-8004.2293.1 0.29 +0.9
2,245,921 - Xcc-8004.2293.1 0.29 -0.7
2,246,040 + Xcc-8004.2293.1 0.39 +0.8
2,246,175 + Xcc-8004.2293.1 0.50 -1.7
2,246,175 + Xcc-8004.2293.1 0.50 +1.6
2,246,175 + Xcc-8004.2293.1 0.50 +1.9
2,246,190 + Xcc-8004.2293.1 0.52 +1.1
2,246,190 + Xcc-8004.2293.1 0.52 -1.1
2,246,190 + Xcc-8004.2293.1 0.52 +0.0
2,246,190 + Xcc-8004.2293.1 0.52 -0.2
2,246,191 - Xcc-8004.2293.1 0.52 -0.5
2,246,191 - Xcc-8004.2293.1 0.52 +1.1
2,246,194 + Xcc-8004.2293.1 0.52 +1.6
2,246,195 - Xcc-8004.2293.1 0.52 +0.8
2,246,195 - Xcc-8004.2293.1 0.52 +0.8
2,246,237 + Xcc-8004.2293.1 0.55 +0.2
2,246,237 + Xcc-8004.2293.1 0.55 -0.8
2,246,237 + Xcc-8004.2293.1 0.55 +0.8
2,246,237 + Xcc-8004.2293.1 0.55 -0.2
2,246,238 - Xcc-8004.2293.1 0.56 -0.4
2,246,238 - Xcc-8004.2293.1 0.56 +0.4
2,246,346 + Xcc-8004.2293.1 0.65 +3.5
2,246,346 + Xcc-8004.2293.1 0.65 -2.0
2,246,433 + Xcc-8004.2293.1 0.72 -2.0
2,246,433 + Xcc-8004.2293.1 0.72 -0.9
2,246,434 - Xcc-8004.2293.1 0.72 -3.5
2,246,457 + Xcc-8004.2293.1 0.74 +0.9
2,246,457 + Xcc-8004.2293.1 0.74 -2.0
2,246,457 + Xcc-8004.2293.1 0.74 -0.2
2,246,644 + Xcc-8004.2293.1 0.89 +1.3
2,246,644 + Xcc-8004.2293.1 0.89 +2.1
2,246,644 + Xcc-8004.2293.1 0.89 +1.1
2,246,644 + Xcc-8004.2293.1 0.89 -0.5
2,246,645 - Xcc-8004.2293.1 0.89 +0.4
2,246,645 - Xcc-8004.2293.1 0.89 +1.5
2,246,645 - Xcc-8004.2293.1 0.89 +0.5
2,246,645 - Xcc-8004.2293.1 0.89 -1.0
2,246,646 + Xcc-8004.2293.1 0.89 +2.3
2,246,646 + Xcc-8004.2293.1 0.89 +1.5
2,246,646 + Xcc-8004.2293.1 0.89 -0.2
2,246,647 - Xcc-8004.2293.1 0.89 +0.8
2,246,647 - Xcc-8004.2293.1 0.89 -0.5
2,246,647 - Xcc-8004.2293.1 0.89 +0.9
2,246,647 - Xcc-8004.2293.1 0.89 +4.1
2,246,647 - Xcc-8004.2293.1 0.89 -2.7
2,246,647 - Xcc-8004.2293.1 0.89 +0.7
2,246,647 - Xcc-8004.2293.1 0.89 +0.9
2,246,647 - Xcc-8004.2293.1 0.89 +1.9
2,246,925 + +1.8
2,246,925 + +1.2
2,247,165 - Xcc-8004.2294.1 0.36 -0.8
2,247,332 + Xcc-8004.2294.1 0.57 -2.9
2,247,332 + Xcc-8004.2294.1 0.57 +1.9
2,247,332 + Xcc-8004.2294.1 0.57 -1.0
2,247,333 - Xcc-8004.2294.1 0.57 -2.0
2,247,333 - Xcc-8004.2294.1 0.57 -0.5
2,247,333 - Xcc-8004.2294.1 0.57 -0.8
2,247,486 + Xcc-8004.2294.1 0.77 -2.4
2,247,487 - Xcc-8004.2294.1 0.77 +1.6
2,247,487 - Xcc-8004.2294.1 0.77 -1.4
2,247,633 + +1.1
2,247,696 - -2.4
2,247,743 + -1.7
2,247,743 + -0.5
2,247,744 - -1.4
2,247,744 - +0.8
2,247,744 - +2.3
2,247,744 - -0.1
2,247,751 + +1.5
2,247,751 + +1.0
2,247,751 + -0.2
2,247,751 + -2.5
2,247,752 - -2.2
2,247,752 - -1.8
2,247,752 - -2.2
2,247,752 - +0.6
2,247,752 - -1.9
2,247,752 - -1.7
2,247,753 + -1.3
2,247,753 + +0.3
2,247,753 + +0.3
2,247,753 + -0.8
2,247,753 + +1.2
2,247,753 + +2.4
2,247,753 + +2.6
2,247,753 + -0.8
2,247,753 + +0.3
2,247,753 + -0.6
2,247,753 + -0.8
2,247,753 + -1.4
2,247,754 - +1.8
2,247,754 - +2.8
2,247,754 - -3.7
2,247,754 - -0.5
2,247,754 - -1.2
2,247,755 + +0.2
2,247,755 + +0.0
2,247,755 + -1.0
2,247,755 + -1.2
2,247,755 + +0.7
2,247,755 + +1.6
2,247,755 + -2.7
2,247,755 + -1.4
2,247,756 - -0.3
2,247,756 - -1.8
2,247,756 - -0.2
2,247,756 - +1.6
2,247,756 - -0.9
2,247,756 - +1.1
2,247,756 - -0.8
2,248,126 - Xcc-8004.2296.1 0.24 +1.6
2,248,400 + Xcc-8004.2296.1 0.55 +1.1
2,248,400 + Xcc-8004.2296.1 0.55 -1.9
2,248,400 + Xcc-8004.2296.1 0.55 +1.8
2,248,400 + Xcc-8004.2296.1 0.55 -1.0
2,248,401 - Xcc-8004.2296.1 0.55 +0.4
2,248,401 - Xcc-8004.2296.1 0.55 +0.4
2,248,401 - Xcc-8004.2296.1 0.55 -1.7
2,248,401 - Xcc-8004.2296.1 0.55 -2.6
2,248,452 + Xcc-8004.2296.1 0.60 +0.7
2,248,452 + Xcc-8004.2296.1 0.60 +0.8
2,248,452 + Xcc-8004.2296.1 0.60 +1.2
2,248,453 - Xcc-8004.2296.1 0.60 -2.1
2,248,565 + Xcc-8004.2296.1 0.73 -1.5
2,248,566 - Xcc-8004.2296.1 0.73 +2.1
2,248,571 + Xcc-8004.2296.1 0.74 -1.0
2,248,571 + Xcc-8004.2296.1 0.74 +0.9
2,248,572 - Xcc-8004.2296.1 0.74 +2.0
2,248,599 - Xcc-8004.2296.1 0.77 -0.2
2,248,622 + Xcc-8004.2296.1 0.79 -2.2
2,248,622 + Xcc-8004.2296.1 0.79 -0.8

Or see this region's nucleotide sequence