Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2055.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2054.1 and Xcc-8004.2055.1 are separated by 146 nucleotidesXcc-8004.2055.1 and Xcc-8004.2056.1 are separated by 365 nucleotides Xcc-8004.2054.1: Xcc-8004.2054.1 - hypothetical protein, at 1,964,408 to 1,966,861 Xcc-8004.2054.1 Xcc-8004.2055.1: Xcc-8004.2055.1 - Mobile element protein, at 1,967,008 to 1,967,166 Xcc-8004.2055.1 Xcc-8004.2056.1: Xcc-8004.2056.1 - Mobile element protein, at 1,967,532 to 1,968,956 Xcc-8004.2056.1 Position (kb) 1967 1968Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1966.022 kb on + strand, within Xcc-8004.2054.1at 1966.022 kb on + strand, within Xcc-8004.2054.1at 1966.023 kb on - strand, within Xcc-8004.2054.1at 1966.023 kb on - strand, within Xcc-8004.2054.1at 1966.023 kb on - strand, within Xcc-8004.2054.1at 1966.118 kb on + strand, within Xcc-8004.2054.1at 1966.118 kb on + strand, within Xcc-8004.2054.1at 1966.118 kb on + strand, within Xcc-8004.2054.1at 1966.119 kb on - strand, within Xcc-8004.2054.1at 1966.119 kb on - strand, within Xcc-8004.2054.1at 1966.119 kb on - strand, within Xcc-8004.2054.1at 1966.234 kb on - strand, within Xcc-8004.2054.1at 1966.234 kb on - strand, within Xcc-8004.2054.1at 1966.272 kb on - strand, within Xcc-8004.2054.1at 1966.272 kb on - strand, within Xcc-8004.2054.1at 1966.278 kb on + strand, within Xcc-8004.2054.1at 1966.278 kb on + strand, within Xcc-8004.2054.1at 1966.279 kb on - strand, within Xcc-8004.2054.1at 1966.297 kb on + strand, within Xcc-8004.2054.1at 1966.298 kb on - strand, within Xcc-8004.2054.1at 1966.319 kb on + strand, within Xcc-8004.2054.1at 1966.320 kb on - strand, within Xcc-8004.2054.1at 1966.347 kb on + strand, within Xcc-8004.2054.1at 1966.348 kb on - strand, within Xcc-8004.2054.1at 1966.348 kb on - strand, within Xcc-8004.2054.1at 1966.396 kb on + strand, within Xcc-8004.2054.1at 1966.396 kb on + strand, within Xcc-8004.2054.1at 1966.397 kb on - strand, within Xcc-8004.2054.1at 1966.403 kb on - strand, within Xcc-8004.2054.1at 1966.507 kb on - strand, within Xcc-8004.2054.1at 1966.535 kb on + strand, within Xcc-8004.2054.1at 1966.536 kb on - strand, within Xcc-8004.2054.1at 1966.578 kb on + strand, within Xcc-8004.2054.1at 1966.578 kb on + strand, within Xcc-8004.2054.1at 1966.578 kb on + strand, within Xcc-8004.2054.1at 1966.578 kb on + strand, within Xcc-8004.2054.1at 1966.578 kb on + strand, within Xcc-8004.2054.1at 1966.578 kb on + strand, within Xcc-8004.2054.1at 1966.578 kb on + strand, within Xcc-8004.2054.1at 1966.578 kb on + strand, within Xcc-8004.2054.1at 1966.579 kb on - strand, within Xcc-8004.2054.1at 1966.579 kb on - strand, within Xcc-8004.2054.1at 1966.579 kb on - strand, within Xcc-8004.2054.1at 1966.579 kb on - strand, within Xcc-8004.2054.1at 1966.579 kb on - strand, within Xcc-8004.2054.1at 1966.581 kb on + strand, within Xcc-8004.2054.1at 1966.581 kb on + strand, within Xcc-8004.2054.1at 1966.581 kb on + strand, within Xcc-8004.2054.1at 1966.582 kb on - strand, within Xcc-8004.2054.1at 1966.648 kb on + strandat 1966.712 kb on - strandat 1966.796 kb on + strandat 1966.796 kb on + strandat 1966.796 kb on + strandat 1966.796 kb on + strandat 1966.796 kb on + strandat 1966.797 kb on - strandat 1966.808 kb on - strandat 1966.866 kb on + strandat 1966.867 kb on - strandat 1966.867 kb on - strandat 1966.873 kb on - strandat 1966.873 kb on - strandat 1966.889 kb on + strandat 1966.889 kb on + strandat 1966.889 kb on + strandat 1966.889 kb on + strandat 1966.890 kb on - strandat 1966.890 kb on - strandat 1966.890 kb on - strandat 1966.891 kb on + strandat 1966.891 kb on + strandat 1966.891 kb on + strandat 1966.891 kb on + strandat 1966.906 kb on - strandat 1966.906 kb on - strandat 1966.930 kb on + strandat 1966.931 kb on - strandat 1966.931 kb on - strandat 1966.970 kb on - strandat 1967.010 kb on - strandat 1967.018 kb on + strandat 1967.018 kb on + strandat 1967.121 kb on + strand, within Xcc-8004.2055.1at 1967.122 kb on - strand, within Xcc-8004.2055.1at 1967.297 kb on + strandat 1967.297 kb on + strandat 1967.298 kb on - strandat 1967.423 kb on + strandat 1967.467 kb on - strandat 1967.467 kb on - strandat 1967.467 kb on - strandat 1967.471 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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1,966,022 + Xcc-8004.2054.1 0.66 -1.1
1,966,022 + Xcc-8004.2054.1 0.66 -0.8
1,966,023 - Xcc-8004.2054.1 0.66 +0.6
1,966,023 - Xcc-8004.2054.1 0.66 -0.3
1,966,023 - Xcc-8004.2054.1 0.66 -0.5
1,966,118 + Xcc-8004.2054.1 0.70 +1.9
1,966,118 + Xcc-8004.2054.1 0.70 -1.0
1,966,118 + Xcc-8004.2054.1 0.70 +0.3
1,966,119 - Xcc-8004.2054.1 0.70 -1.9
1,966,119 - Xcc-8004.2054.1 0.70 +0.6
1,966,119 - Xcc-8004.2054.1 0.70 +1.5
1,966,234 - Xcc-8004.2054.1 0.74 -0.6
1,966,234 - Xcc-8004.2054.1 0.74 +0.0
1,966,272 - Xcc-8004.2054.1 0.76 -1.0
1,966,272 - Xcc-8004.2054.1 0.76 +1.8
1,966,278 + Xcc-8004.2054.1 0.76 +0.8
1,966,278 + Xcc-8004.2054.1 0.76 +0.0
1,966,279 - Xcc-8004.2054.1 0.76 +1.5
1,966,297 + Xcc-8004.2054.1 0.77 +2.1
1,966,298 - Xcc-8004.2054.1 0.77 +0.8
1,966,319 + Xcc-8004.2054.1 0.78 +2.3
1,966,320 - Xcc-8004.2054.1 0.78 +1.9
1,966,347 + Xcc-8004.2054.1 0.79 +0.6
1,966,348 - Xcc-8004.2054.1 0.79 +1.7
1,966,348 - Xcc-8004.2054.1 0.79 +0.0
1,966,396 + Xcc-8004.2054.1 0.81 -0.8
1,966,396 + Xcc-8004.2054.1 0.81 -2.2
1,966,397 - Xcc-8004.2054.1 0.81 +0.3
1,966,403 - Xcc-8004.2054.1 0.81 +0.6
1,966,507 - Xcc-8004.2054.1 0.86 +1.9
1,966,535 + Xcc-8004.2054.1 0.87 -1.2
1,966,536 - Xcc-8004.2054.1 0.87 +1.2
1,966,578 + Xcc-8004.2054.1 0.88 -1.4
1,966,578 + Xcc-8004.2054.1 0.88 +0.5
1,966,578 + Xcc-8004.2054.1 0.88 +0.8
1,966,578 + Xcc-8004.2054.1 0.88 -0.1
1,966,578 + Xcc-8004.2054.1 0.88 -0.3
1,966,578 + Xcc-8004.2054.1 0.88 +0.0
1,966,578 + Xcc-8004.2054.1 0.88 +0.2
1,966,578 + Xcc-8004.2054.1 0.88 -0.5
1,966,579 - Xcc-8004.2054.1 0.88 -1.0
1,966,579 - Xcc-8004.2054.1 0.88 -0.2
1,966,579 - Xcc-8004.2054.1 0.88 -0.3
1,966,579 - Xcc-8004.2054.1 0.88 +2.3
1,966,579 - Xcc-8004.2054.1 0.88 -1.2
1,966,581 + Xcc-8004.2054.1 0.89 -0.2
1,966,581 + Xcc-8004.2054.1 0.89 +0.3
1,966,581 + Xcc-8004.2054.1 0.89 -1.7
1,966,582 - Xcc-8004.2054.1 0.89 +1.9
1,966,648 + -0.2
1,966,712 - -0.5
1,966,796 + +1.8
1,966,796 + -1.2
1,966,796 + -0.3
1,966,796 + -2.6
1,966,796 + -2.4
1,966,797 - +0.8
1,966,808 - -2.7
1,966,866 + -0.4
1,966,867 - +0.2
1,966,867 - -0.3
1,966,873 - +1.0
1,966,873 - -2.3
1,966,889 + -0.2
1,966,889 + +1.9
1,966,889 + +1.1
1,966,889 + +1.1
1,966,890 - -0.8
1,966,890 - -2.2
1,966,890 - -2.3
1,966,891 + +1.9
1,966,891 + -2.0
1,966,891 + +1.9
1,966,891 + +1.5
1,966,906 - -2.0
1,966,906 - +0.8
1,966,930 + -1.8
1,966,931 - +0.1
1,966,931 - +0.3
1,966,970 - +3.0
1,967,010 - +1.5
1,967,018 + -0.0
1,967,018 + -2.0
1,967,121 + Xcc-8004.2055.1 0.71 -2.7
1,967,122 - Xcc-8004.2055.1 0.72 -0.5
1,967,297 + +0.3
1,967,297 + +1.3
1,967,298 - +0.2
1,967,423 + +2.4
1,967,467 - +2.3
1,967,467 - +0.7
1,967,467 - +2.5
1,967,471 - +0.8

Or see this region's nucleotide sequence