Experiment: Xylemvessel barcodes T0L1P3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.194.1 and Xcc-8004.195.1 are separated by 133 nucleotides Xcc-8004.195.1 and Xcc-8004.196.1 are separated by 129 nucleotides
Xcc-8004.194.1: Xcc-8004.194.1 - putative iron-regulated membrane protein, at 185,667 to 187,202
Xcc-8004.194.1
Xcc-8004.195.1: Xcc-8004.195.1 - phosphoesterase, putative, at 187,336 to 187,839
Xcc-8004.195.1
Xcc-8004.196.1: Xcc-8004.196.1 - L-fucose dehydrogenase, at 187,969 to 189,117
Xcc-8004.196.1
Position (kb) 187
188 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 186.499 kb on - strand, within Xcc-8004.194.1 at 186.499 kb on - strand, within Xcc-8004.194.1 at 186.537 kb on + strand, within Xcc-8004.194.1 at 186.537 kb on + strand, within Xcc-8004.194.1 at 186.538 kb on - strand, within Xcc-8004.194.1 at 186.538 kb on - strand, within Xcc-8004.194.1 at 186.714 kb on + strand, within Xcc-8004.194.1 at 186.714 kb on + strand, within Xcc-8004.194.1 at 186.715 kb on - strand, within Xcc-8004.194.1 at 186.715 kb on - strand, within Xcc-8004.194.1 at 186.750 kb on + strand, within Xcc-8004.194.1 at 186.751 kb on - strand, within Xcc-8004.194.1 at 186.751 kb on - strand, within Xcc-8004.194.1 at 186.927 kb on + strand, within Xcc-8004.194.1 at 186.928 kb on - strand, within Xcc-8004.194.1 at 186.928 kb on - strand, within Xcc-8004.194.1 at 186.990 kb on + strand, within Xcc-8004.194.1 at 186.991 kb on - strand, within Xcc-8004.194.1 at 186.991 kb on - strand, within Xcc-8004.194.1 at 187.132 kb on - strand at 187.253 kb on + strand at 187.724 kb on - strand, within Xcc-8004.195.1 at 187.817 kb on + strand at 187.817 kb on + strand at 187.817 kb on + strand at 187.818 kb on - strand at 187.818 kb on - strand at 187.818 kb on - strand at 187.974 kb on + strand at 187.974 kb on + strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 188.110 kb on - strand, within Xcc-8004.196.1 at 188.251 kb on + strand, within Xcc-8004.196.1 at 188.251 kb on + strand, within Xcc-8004.196.1 at 188.316 kb on + strand, within Xcc-8004.196.1 at 188.317 kb on - strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.435 kb on - strand, within Xcc-8004.196.1 at 188.509 kb on + strand, within Xcc-8004.196.1 at 188.509 kb on + strand, within Xcc-8004.196.1 at 188.509 kb on + strand, within Xcc-8004.196.1 at 188.510 kb on - strand, within Xcc-8004.196.1 at 188.510 kb on - strand, within Xcc-8004.196.1 at 188.510 kb on - strand, within Xcc-8004.196.1 at 188.510 kb on - strand, within Xcc-8004.196.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3 remove 186,499 - Xcc-8004.194.1 0.54 +0.8 186,499 - Xcc-8004.194.1 0.54 -1.9 186,537 + Xcc-8004.194.1 0.57 -0.2 186,537 + Xcc-8004.194.1 0.57 -1.4 186,538 - Xcc-8004.194.1 0.57 +3.9 186,538 - Xcc-8004.194.1 0.57 +0.9 186,714 + Xcc-8004.194.1 0.68 -1.1 186,714 + Xcc-8004.194.1 0.68 -1.9 186,715 - Xcc-8004.194.1 0.68 -1.4 186,715 - Xcc-8004.194.1 0.68 -3.5 186,750 + Xcc-8004.194.1 0.71 -1.0 186,751 - Xcc-8004.194.1 0.71 +1.6 186,751 - Xcc-8004.194.1 0.71 -1.1 186,927 + Xcc-8004.194.1 0.82 -0.2 186,928 - Xcc-8004.194.1 0.82 -0.6 186,928 - Xcc-8004.194.1 0.82 +1.0 186,990 + Xcc-8004.194.1 0.86 +0.1 186,991 - Xcc-8004.194.1 0.86 +1.0 186,991 - Xcc-8004.194.1 0.86 -0.6 187,132 - -1.7 187,253 + -2.5 187,724 - Xcc-8004.195.1 0.77 -1.9 187,817 + -2.2 187,817 + -0.1 187,817 + -1.6 187,818 - -0.9 187,818 - +0.1 187,818 - +0.1 187,974 + +2.6 187,974 + -0.8 187,975 - -2.1 187,975 - -3.3 187,975 - +1.2 187,975 - +0.2 187,975 - -1.2 187,975 - -2.2 187,975 - -1.0 188,110 - Xcc-8004.196.1 0.12 +0.3 188,251 + Xcc-8004.196.1 0.25 -0.8 188,251 + Xcc-8004.196.1 0.25 +0.0 188,316 + Xcc-8004.196.1 0.30 +0.8 188,317 - Xcc-8004.196.1 0.30 -0.8 188,335 + Xcc-8004.196.1 0.32 +0.7 188,335 + Xcc-8004.196.1 0.32 -2.1 188,335 + Xcc-8004.196.1 0.32 +1.4 188,335 + Xcc-8004.196.1 0.32 +0.2 188,335 + Xcc-8004.196.1 0.32 -1.9 188,335 + Xcc-8004.196.1 0.32 +1.2 188,335 + Xcc-8004.196.1 0.32 +1.7 188,335 + Xcc-8004.196.1 0.32 +0.5 188,336 - Xcc-8004.196.1 0.32 -1.3 188,336 - Xcc-8004.196.1 0.32 +0.3 188,336 - Xcc-8004.196.1 0.32 -1.6 188,336 - Xcc-8004.196.1 0.32 +1.7 188,336 - Xcc-8004.196.1 0.32 +1.3 188,336 - Xcc-8004.196.1 0.32 +0.8 188,336 - Xcc-8004.196.1 0.32 -0.9 188,435 - Xcc-8004.196.1 0.41 +2.1 188,509 + Xcc-8004.196.1 0.47 +0.0 188,509 + Xcc-8004.196.1 0.47 -0.8 188,509 + Xcc-8004.196.1 0.47 +1.5 188,510 - Xcc-8004.196.1 0.47 -2.8 188,510 - Xcc-8004.196.1 0.47 -2.1 188,510 - Xcc-8004.196.1 0.47 +1.6 188,510 - Xcc-8004.196.1 0.47 -1.6
Or see this region's nucleotide sequence