Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1805.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1803.1 and Xcc-8004.1804.1 overlap by 25 nucleotidesXcc-8004.1804.1 and Xcc-8004.1805.1 are separated by 172 nucleotidesXcc-8004.1805.1 and Xcc-8004.1806.1 are separated by 98 nucleotides Xcc-8004.1803.1: Xcc-8004.1803.1 - extracellular serine protease, at 1,739,184 to 1,740,887 Xcc-8004.1803.1 Xcc-8004.1804.1: Xcc-8004.1804.1 - hypothetical protein, at 1,740,863 to 1,741,468 Xcc-8004.1804.1 Xcc-8004.1805.1: Xcc-8004.1805.1 - Transcriptional regulator, LysR family, at 1,741,641 to 1,742,573 Xcc-8004.1805.1 Xcc-8004.1806.1: Xcc-8004.1806.1 - MFS transporter, at 1,742,672 to 1,743,880 Xcc-8004.1806.1 Position (kb) 1741 1742 1743Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1740.667 kb on - strand, within Xcc-8004.1803.1at 1740.699 kb on + strand, within Xcc-8004.1803.1at 1740.909 kb on + strandat 1740.909 kb on + strandat 1741.060 kb on + strand, within Xcc-8004.1804.1at 1741.060 kb on + strand, within Xcc-8004.1804.1at 1741.125 kb on + strand, within Xcc-8004.1804.1at 1741.206 kb on - strand, within Xcc-8004.1804.1at 1741.234 kb on + strand, within Xcc-8004.1804.1at 1741.235 kb on - strand, within Xcc-8004.1804.1at 1741.279 kb on + strand, within Xcc-8004.1804.1at 1741.284 kb on - strand, within Xcc-8004.1804.1at 1741.395 kb on + strand, within Xcc-8004.1804.1at 1741.395 kb on + strand, within Xcc-8004.1804.1at 1741.395 kb on + strand, within Xcc-8004.1804.1at 1741.473 kb on + strandat 1741.473 kb on + strandat 1741.473 kb on + strandat 1741.473 kb on + strandat 1741.474 kb on - strandat 1741.474 kb on - strandat 1741.474 kb on - strandat 1741.474 kb on - strandat 1741.479 kb on + strandat 1741.480 kb on - strandat 1741.589 kb on + strandat 1741.589 kb on + strandat 1741.589 kb on + strandat 1741.590 kb on - strandat 1741.617 kb on + strandat 1741.618 kb on - strandat 1741.618 kb on - strandat 1741.664 kb on + strandat 1741.938 kb on + strand, within Xcc-8004.1805.1at 1741.938 kb on + strand, within Xcc-8004.1805.1at 1741.939 kb on - strand, within Xcc-8004.1805.1at 1742.257 kb on + strand, within Xcc-8004.1805.1at 1742.257 kb on + strand, within Xcc-8004.1805.1at 1742.258 kb on - strand, within Xcc-8004.1805.1at 1742.258 kb on - strand, within Xcc-8004.1805.1at 1742.258 kb on - strand, within Xcc-8004.1805.1at 1742.608 kb on + strandat 1742.686 kb on + strandat 1742.686 kb on + strandat 1742.686 kb on + strandat 1742.686 kb on + strandat 1742.686 kb on + strandat 1742.687 kb on - strandat 1742.687 kb on - strandat 1742.687 kb on - strandat 1742.687 kb on - strandat 1742.687 kb on - strandat 1742.941 kb on + strand, within Xcc-8004.1806.1at 1742.941 kb on + strand, within Xcc-8004.1806.1at 1742.942 kb on - strand, within Xcc-8004.1806.1at 1742.942 kb on - strand, within Xcc-8004.1806.1at 1742.966 kb on + strand, within Xcc-8004.1806.1at 1742.966 kb on + strand, within Xcc-8004.1806.1at 1742.967 kb on - strand, within Xcc-8004.1806.1at 1743.333 kb on - strand, within Xcc-8004.1806.1at 1743.359 kb on + strand, within Xcc-8004.1806.1at 1743.359 kb on + strand, within Xcc-8004.1806.1at 1743.359 kb on + strand, within Xcc-8004.1806.1at 1743.359 kb on + strand, within Xcc-8004.1806.1at 1743.359 kb on + strand, within Xcc-8004.1806.1at 1743.359 kb on + strand, within Xcc-8004.1806.1at 1743.359 kb on + strand, within Xcc-8004.1806.1at 1743.359 kb on + strand, within Xcc-8004.1806.1at 1743.359 kb on + strand, within Xcc-8004.1806.1at 1743.360 kb on - strand, within Xcc-8004.1806.1at 1743.360 kb on - strand, within Xcc-8004.1806.1at 1743.360 kb on - strand, within Xcc-8004.1806.1at 1743.360 kb on - strand, within Xcc-8004.1806.1at 1743.360 kb on - strand, within Xcc-8004.1806.1at 1743.360 kb on - strand, within Xcc-8004.1806.1at 1743.360 kb on - strand, within Xcc-8004.1806.1at 1743.362 kb on - strand, within Xcc-8004.1806.1at 1743.362 kb on - strand, within Xcc-8004.1806.1at 1743.362 kb on - strand, within Xcc-8004.1806.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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1,740,667 - Xcc-8004.1803.1 0.87 +0.3
1,740,699 + Xcc-8004.1803.1 0.89 +0.4
1,740,909 + +0.7
1,740,909 + +1.6
1,741,060 + Xcc-8004.1804.1 0.33 -0.6
1,741,060 + Xcc-8004.1804.1 0.33 +3.2
1,741,125 + Xcc-8004.1804.1 0.43 -0.1
1,741,206 - Xcc-8004.1804.1 0.57 +1.5
1,741,234 + Xcc-8004.1804.1 0.61 +0.7
1,741,235 - Xcc-8004.1804.1 0.61 +0.9
1,741,279 + Xcc-8004.1804.1 0.69 +0.6
1,741,284 - Xcc-8004.1804.1 0.69 -2.3
1,741,395 + Xcc-8004.1804.1 0.88 -0.9
1,741,395 + Xcc-8004.1804.1 0.88 -0.6
1,741,395 + Xcc-8004.1804.1 0.88 +0.2
1,741,473 + -2.4
1,741,473 + +1.3
1,741,473 + -0.0
1,741,473 + +1.9
1,741,474 - +0.9
1,741,474 - +0.5
1,741,474 - +0.5
1,741,474 - -1.9
1,741,479 + +1.3
1,741,480 - +1.2
1,741,589 + +1.5
1,741,589 + -2.7
1,741,589 + +2.5
1,741,590 - +0.5
1,741,617 + +1.6
1,741,618 - +0.8
1,741,618 - +1.2
1,741,664 + +1.4
1,741,938 + Xcc-8004.1805.1 0.32 -1.2
1,741,938 + Xcc-8004.1805.1 0.32 -1.5
1,741,939 - Xcc-8004.1805.1 0.32 -2.2
1,742,257 + Xcc-8004.1805.1 0.66 -0.9
1,742,257 + Xcc-8004.1805.1 0.66 +0.9
1,742,258 - Xcc-8004.1805.1 0.66 -2.8
1,742,258 - Xcc-8004.1805.1 0.66 -1.1
1,742,258 - Xcc-8004.1805.1 0.66 -1.5
1,742,608 + -2.7
1,742,686 + +1.1
1,742,686 + +2.1
1,742,686 + +1.1
1,742,686 + -2.9
1,742,686 + +0.7
1,742,687 - +1.8
1,742,687 - +1.7
1,742,687 - -0.5
1,742,687 - -0.6
1,742,687 - +1.5
1,742,941 + Xcc-8004.1806.1 0.22 -0.0
1,742,941 + Xcc-8004.1806.1 0.22 -2.8
1,742,942 - Xcc-8004.1806.1 0.22 -1.6
1,742,942 - Xcc-8004.1806.1 0.22 +1.8
1,742,966 + Xcc-8004.1806.1 0.24 +2.1
1,742,966 + Xcc-8004.1806.1 0.24 +2.1
1,742,967 - Xcc-8004.1806.1 0.24 +1.9
1,743,333 - Xcc-8004.1806.1 0.55 +0.8
1,743,359 + Xcc-8004.1806.1 0.57 +2.2
1,743,359 + Xcc-8004.1806.1 0.57 -0.7
1,743,359 + Xcc-8004.1806.1 0.57 +0.9
1,743,359 + Xcc-8004.1806.1 0.57 -0.9
1,743,359 + Xcc-8004.1806.1 0.57 -0.7
1,743,359 + Xcc-8004.1806.1 0.57 -2.1
1,743,359 + Xcc-8004.1806.1 0.57 -2.3
1,743,359 + Xcc-8004.1806.1 0.57 +0.3
1,743,359 + Xcc-8004.1806.1 0.57 -0.2
1,743,360 - Xcc-8004.1806.1 0.57 +0.1
1,743,360 - Xcc-8004.1806.1 0.57 +0.7
1,743,360 - Xcc-8004.1806.1 0.57 -2.1
1,743,360 - Xcc-8004.1806.1 0.57 +0.6
1,743,360 - Xcc-8004.1806.1 0.57 +2.2
1,743,360 - Xcc-8004.1806.1 0.57 -1.6
1,743,360 - Xcc-8004.1806.1 0.57 -0.9
1,743,362 - Xcc-8004.1806.1 0.57 -1.7
1,743,362 - Xcc-8004.1806.1 0.57 -0.2
1,743,362 - Xcc-8004.1806.1 0.57 -2.6

Or see this region's nucleotide sequence