Experiment: Xylemvessel barcodes T0L1P3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1753.1 and Xcc-8004.1755.1 are separated by 712 nucleotides Xcc-8004.1755.1 and Xcc-8004.1756.1 overlap by 1 nucleotides
Xcc-8004.1753.1: Xcc-8004.1753.1 - hydrolase, at 1,684,712 to 1,685,389
Xcc-8004.1753.1
Xcc-8004.1755.1: Xcc-8004.1755.1 - COG2879, Hypothetical small protein yjiX, at 1,686,102 to 1,686,326
Xcc-8004.1755.1
Xcc-8004.1756.1: Xcc-8004.1756.1 - Carbon starvation protein A, at 1,686,326 to 1,688,398
Xcc-8004.1756.1
Position (kb) 1686
1687 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1685.148 kb on - strand, within Xcc-8004.1753.1 at 1685.148 kb on - strand, within Xcc-8004.1753.1 at 1685.175 kb on + strand, within Xcc-8004.1753.1 at 1685.260 kb on + strand, within Xcc-8004.1753.1 at 1685.276 kb on - strand, within Xcc-8004.1753.1 at 1685.276 kb on - strand, within Xcc-8004.1753.1 at 1685.493 kb on - strand at 1685.572 kb on + strand at 1685.572 kb on + strand at 1685.600 kb on + strand at 1685.601 kb on - strand at 1685.664 kb on - strand at 1685.735 kb on - strand at 1685.907 kb on + strand at 1685.908 kb on - strand at 1685.908 kb on - strand at 1686.084 kb on - strand at 1686.084 kb on - strand at 1686.084 kb on - strand at 1686.084 kb on - strand at 1686.170 kb on - strand, within Xcc-8004.1755.1 at 1686.217 kb on + strand, within Xcc-8004.1755.1 at 1686.217 kb on + strand, within Xcc-8004.1755.1 at 1686.217 kb on + strand, within Xcc-8004.1755.1 at 1686.217 kb on + strand, within Xcc-8004.1755.1 at 1686.296 kb on - strand, within Xcc-8004.1755.1 at 1686.296 kb on - strand, within Xcc-8004.1755.1 at 1686.327 kb on + strand at 1686.364 kb on - strand at 1686.426 kb on + strand at 1686.427 kb on - strand at 1686.630 kb on + strand, within Xcc-8004.1756.1 at 1686.631 kb on - strand, within Xcc-8004.1756.1 at 1686.813 kb on + strand, within Xcc-8004.1756.1 at 1686.813 kb on + strand, within Xcc-8004.1756.1 at 1686.822 kb on + strand, within Xcc-8004.1756.1 at 1686.823 kb on - strand, within Xcc-8004.1756.1 at 1686.823 kb on - strand, within Xcc-8004.1756.1 at 1686.999 kb on + strand, within Xcc-8004.1756.1 at 1687.000 kb on - strand, within Xcc-8004.1756.1 at 1687.230 kb on + strand, within Xcc-8004.1756.1 at 1687.231 kb on - strand, within Xcc-8004.1756.1 at 1687.231 kb on - strand, within Xcc-8004.1756.1 at 1687.231 kb on - strand, within Xcc-8004.1756.1 at 1687.231 kb on - strand, within Xcc-8004.1756.1 at 1687.231 kb on - strand, within Xcc-8004.1756.1 at 1687.314 kb on + strand, within Xcc-8004.1756.1 at 1687.314 kb on + strand, within Xcc-8004.1756.1 at 1687.314 kb on + strand, within Xcc-8004.1756.1 at 1687.315 kb on - strand, within Xcc-8004.1756.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3 remove 1,685,148 - Xcc-8004.1753.1 0.64 +1.1 1,685,148 - Xcc-8004.1753.1 0.64 +1.6 1,685,175 + Xcc-8004.1753.1 0.68 -1.6 1,685,260 + Xcc-8004.1753.1 0.81 -1.3 1,685,276 - Xcc-8004.1753.1 0.83 -3.5 1,685,276 - Xcc-8004.1753.1 0.83 +0.6 1,685,493 - -1.7 1,685,572 + -1.5 1,685,572 + +0.2 1,685,600 + +1.3 1,685,601 - -0.2 1,685,664 - +4.1 1,685,735 - -1.3 1,685,907 + -1.0 1,685,908 - +1.1 1,685,908 - +0.7 1,686,084 - +2.3 1,686,084 - +2.4 1,686,084 - +0.7 1,686,084 - +0.9 1,686,170 - Xcc-8004.1755.1 0.30 -1.0 1,686,217 + Xcc-8004.1755.1 0.51 -1.9 1,686,217 + Xcc-8004.1755.1 0.51 -0.7 1,686,217 + Xcc-8004.1755.1 0.51 -0.3 1,686,217 + Xcc-8004.1755.1 0.51 +0.2 1,686,296 - Xcc-8004.1755.1 0.86 -2.0 1,686,296 - Xcc-8004.1755.1 0.86 -0.4 1,686,327 + +2.3 1,686,364 - +2.0 1,686,426 + +1.4 1,686,427 - +3.1 1,686,630 + Xcc-8004.1756.1 0.15 +1.1 1,686,631 - Xcc-8004.1756.1 0.15 -1.0 1,686,813 + Xcc-8004.1756.1 0.23 +2.3 1,686,813 + Xcc-8004.1756.1 0.23 -2.1 1,686,822 + Xcc-8004.1756.1 0.24 -0.7 1,686,823 - Xcc-8004.1756.1 0.24 +0.4 1,686,823 - Xcc-8004.1756.1 0.24 +1.6 1,686,999 + Xcc-8004.1756.1 0.32 -3.2 1,687,000 - Xcc-8004.1756.1 0.33 -1.6 1,687,230 + Xcc-8004.1756.1 0.44 -2.3 1,687,231 - Xcc-8004.1756.1 0.44 -1.3 1,687,231 - Xcc-8004.1756.1 0.44 -2.5 1,687,231 - Xcc-8004.1756.1 0.44 +2.1 1,687,231 - Xcc-8004.1756.1 0.44 -1.1 1,687,231 - Xcc-8004.1756.1 0.44 -0.8 1,687,314 + Xcc-8004.1756.1 0.48 +1.4 1,687,314 + Xcc-8004.1756.1 0.48 -0.4 1,687,314 + Xcc-8004.1756.1 0.48 -2.5 1,687,315 - Xcc-8004.1756.1 0.48 +1.9
Or see this region's nucleotide sequence