Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1714.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1713.1 and Xcc-8004.1714.1 are separated by 122 nucleotidesXcc-8004.1714.1 and Xcc-8004.1715.1 are separated by 237 nucleotidesXcc-8004.1715.1 and Xcc-8004.1716.1 are separated by 13 nucleotides Xcc-8004.1713.1: Xcc-8004.1713.1 - Twitching motility protein PilT, at 1,642,463 to 1,643,500 Xcc-8004.1713.1 Xcc-8004.1714.1: Xcc-8004.1714.1 - Twitching motility protein PilT, at 1,643,623 to 1,644,753 Xcc-8004.1714.1 Xcc-8004.1715.1: Xcc-8004.1715.1 - Transporter, at 1,644,991 to 1,645,707 Xcc-8004.1715.1 Xcc-8004.1716.1: Xcc-8004.1716.1 - FIG003003: hypothetical protein, at 1,645,721 to 1,646,620 Xcc-8004.1716.1 Position (kb) 1643 1644 1645Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1642.753 kb on + strand, within Xcc-8004.1713.1at 1642.753 kb on + strand, within Xcc-8004.1713.1at 1642.754 kb on - strand, within Xcc-8004.1713.1at 1642.898 kb on + strand, within Xcc-8004.1713.1at 1642.899 kb on - strand, within Xcc-8004.1713.1at 1643.366 kb on + strand, within Xcc-8004.1713.1at 1643.366 kb on + strand, within Xcc-8004.1713.1at 1643.366 kb on + strand, within Xcc-8004.1713.1at 1643.366 kb on + strand, within Xcc-8004.1713.1at 1643.367 kb on - strand, within Xcc-8004.1713.1at 1643.367 kb on - strand, within Xcc-8004.1713.1at 1643.367 kb on - strand, within Xcc-8004.1713.1at 1643.367 kb on - strand, within Xcc-8004.1713.1at 1643.367 kb on - strand, within Xcc-8004.1713.1at 1643.393 kb on + strand, within Xcc-8004.1713.1at 1643.890 kb on + strand, within Xcc-8004.1714.1at 1643.891 kb on - strand, within Xcc-8004.1714.1at 1643.891 kb on - strand, within Xcc-8004.1714.1at 1644.509 kb on - strand, within Xcc-8004.1714.1at 1644.509 kb on - strand, within Xcc-8004.1714.1at 1644.625 kb on + strand, within Xcc-8004.1714.1at 1644.625 kb on + strand, within Xcc-8004.1714.1at 1644.626 kb on - strand, within Xcc-8004.1714.1at 1644.806 kb on - strandat 1644.935 kb on + strandat 1644.935 kb on + strandat 1644.935 kb on + strandat 1644.935 kb on + strandat 1644.936 kb on - strandat 1644.936 kb on - strandat 1644.952 kb on - strandat 1644.959 kb on - strandat 1644.959 kb on - strandat 1645.117 kb on + strand, within Xcc-8004.1715.1at 1645.118 kb on - strand, within Xcc-8004.1715.1at 1645.118 kb on - strand, within Xcc-8004.1715.1at 1645.118 kb on - strand, within Xcc-8004.1715.1at 1645.118 kb on - strand, within Xcc-8004.1715.1at 1645.303 kb on + strand, within Xcc-8004.1715.1at 1645.304 kb on - strand, within Xcc-8004.1715.1at 1645.304 kb on - strand, within Xcc-8004.1715.1at 1645.409 kb on - strand, within Xcc-8004.1715.1at 1645.526 kb on - strand, within Xcc-8004.1715.1at 1645.630 kb on + strand, within Xcc-8004.1715.1at 1645.630 kb on + strand, within Xcc-8004.1715.1at 1645.693 kb on + strandat 1645.694 kb on - strandat 1645.695 kb on + strandat 1645.696 kb on - strandat 1645.696 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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1,642,753 + Xcc-8004.1713.1 0.28 -0.9
1,642,753 + Xcc-8004.1713.1 0.28 +1.8
1,642,754 - Xcc-8004.1713.1 0.28 +2.8
1,642,898 + Xcc-8004.1713.1 0.42 -1.9
1,642,899 - Xcc-8004.1713.1 0.42 -1.7
1,643,366 + Xcc-8004.1713.1 0.87 -0.3
1,643,366 + Xcc-8004.1713.1 0.87 +1.1
1,643,366 + Xcc-8004.1713.1 0.87 -1.5
1,643,366 + Xcc-8004.1713.1 0.87 +1.0
1,643,367 - Xcc-8004.1713.1 0.87 +0.4
1,643,367 - Xcc-8004.1713.1 0.87 -3.0
1,643,367 - Xcc-8004.1713.1 0.87 +1.5
1,643,367 - Xcc-8004.1713.1 0.87 +2.1
1,643,367 - Xcc-8004.1713.1 0.87 -1.0
1,643,393 + Xcc-8004.1713.1 0.90 +0.4
1,643,890 + Xcc-8004.1714.1 0.24 -0.3
1,643,891 - Xcc-8004.1714.1 0.24 -1.3
1,643,891 - Xcc-8004.1714.1 0.24 -0.9
1,644,509 - Xcc-8004.1714.1 0.78 -2.6
1,644,509 - Xcc-8004.1714.1 0.78 -2.5
1,644,625 + Xcc-8004.1714.1 0.89 -0.8
1,644,625 + Xcc-8004.1714.1 0.89 +0.8
1,644,626 - Xcc-8004.1714.1 0.89 -0.8
1,644,806 - +0.3
1,644,935 + -0.4
1,644,935 + +0.3
1,644,935 + +0.8
1,644,935 + -0.3
1,644,936 - -2.0
1,644,936 - -1.9
1,644,952 - +1.4
1,644,959 - +0.6
1,644,959 - +1.6
1,645,117 + Xcc-8004.1715.1 0.18 -2.5
1,645,118 - Xcc-8004.1715.1 0.18 -0.2
1,645,118 - Xcc-8004.1715.1 0.18 -0.9
1,645,118 - Xcc-8004.1715.1 0.18 -3.3
1,645,118 - Xcc-8004.1715.1 0.18 -0.9
1,645,303 + Xcc-8004.1715.1 0.44 -2.5
1,645,304 - Xcc-8004.1715.1 0.44 +2.8
1,645,304 - Xcc-8004.1715.1 0.44 -0.0
1,645,409 - Xcc-8004.1715.1 0.58 +0.0
1,645,526 - Xcc-8004.1715.1 0.75 -1.9
1,645,630 + Xcc-8004.1715.1 0.89 -0.9
1,645,630 + Xcc-8004.1715.1 0.89 -1.4
1,645,693 + -1.7
1,645,694 - -0.1
1,645,695 + +1.3
1,645,696 - +1.7
1,645,696 - -0.9

Or see this region's nucleotide sequence