Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1606.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1604.1 and Xcc-8004.1605.1 are separated by 10 nucleotidesXcc-8004.1605.1 and Xcc-8004.1606.1 overlap by 4 nucleotidesXcc-8004.1606.1 and Xcc-8004.1607.1 are separated by 96 nucleotides Xcc-8004.1604.1: Xcc-8004.1604.1 - Probable signal peptide protein, at 1,538,204 to 1,538,773 Xcc-8004.1604.1 Xcc-8004.1605.1: Xcc-8004.1605.1 - Cytochrome B561, at 1,538,784 to 1,539,347 Xcc-8004.1605.1 Xcc-8004.1606.1: Xcc-8004.1606.1 - FIG01211483: hypothetical protein, at 1,539,344 to 1,540,021 Xcc-8004.1606.1 Xcc-8004.1607.1: Xcc-8004.1607.1 - Histidine kinase/response regulator hybrid protein, at 1,540,118 to 1,543,678 Xcc-8004.1607.1 Position (kb) 1539 1540 1541Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1538.412 kb on + strand, within Xcc-8004.1604.1at 1538.413 kb on - strand, within Xcc-8004.1604.1at 1538.413 kb on - strand, within Xcc-8004.1604.1at 1538.644 kb on - strand, within Xcc-8004.1604.1at 1538.644 kb on - strand, within Xcc-8004.1604.1at 1538.644 kb on - strand, within Xcc-8004.1604.1at 1538.647 kb on + strand, within Xcc-8004.1604.1at 1538.648 kb on - strand, within Xcc-8004.1604.1at 1538.648 kb on - strand, within Xcc-8004.1604.1at 1538.685 kb on + strand, within Xcc-8004.1604.1at 1538.685 kb on + strand, within Xcc-8004.1604.1at 1538.686 kb on - strand, within Xcc-8004.1604.1at 1538.686 kb on - strand, within Xcc-8004.1604.1at 1538.686 kb on - strand, within Xcc-8004.1604.1at 1538.686 kb on - strand, within Xcc-8004.1604.1at 1538.739 kb on - strandat 1538.785 kb on + strandat 1538.857 kb on + strand, within Xcc-8004.1605.1at 1538.858 kb on - strand, within Xcc-8004.1605.1at 1538.858 kb on - strand, within Xcc-8004.1605.1at 1539.022 kb on + strand, within Xcc-8004.1605.1at 1539.022 kb on + strand, within Xcc-8004.1605.1at 1539.022 kb on + strand, within Xcc-8004.1605.1at 1539.062 kb on - strand, within Xcc-8004.1605.1at 1539.139 kb on + strand, within Xcc-8004.1605.1at 1539.139 kb on + strand, within Xcc-8004.1605.1at 1539.139 kb on + strand, within Xcc-8004.1605.1at 1539.140 kb on - strand, within Xcc-8004.1605.1at 1539.140 kb on - strand, within Xcc-8004.1605.1at 1539.140 kb on - strand, within Xcc-8004.1605.1at 1539.140 kb on - strand, within Xcc-8004.1605.1at 1539.208 kb on + strand, within Xcc-8004.1605.1at 1539.220 kb on + strand, within Xcc-8004.1605.1at 1539.220 kb on + strand, within Xcc-8004.1605.1at 1539.220 kb on + strand, within Xcc-8004.1605.1at 1539.220 kb on + strand, within Xcc-8004.1605.1at 1539.220 kb on + strand, within Xcc-8004.1605.1at 1539.220 kb on + strand, within Xcc-8004.1605.1at 1539.221 kb on - strand, within Xcc-8004.1605.1at 1539.221 kb on - strand, within Xcc-8004.1605.1at 1539.734 kb on + strand, within Xcc-8004.1606.1at 1539.734 kb on + strand, within Xcc-8004.1606.1at 1539.735 kb on - strand, within Xcc-8004.1606.1at 1539.735 kb on - strand, within Xcc-8004.1606.1at 1539.735 kb on - strand, within Xcc-8004.1606.1at 1539.942 kb on + strand, within Xcc-8004.1606.1at 1539.942 kb on + strand, within Xcc-8004.1606.1at 1539.942 kb on + strand, within Xcc-8004.1606.1at 1539.943 kb on - strand, within Xcc-8004.1606.1at 1540.032 kb on + strandat 1540.032 kb on + strandat 1540.268 kb on + strandat 1540.283 kb on - strandat 1540.385 kb on + strandat 1540.385 kb on + strandat 1540.385 kb on + strandat 1540.385 kb on + strandat 1540.386 kb on - strandat 1540.386 kb on - strandat 1540.472 kb on + strandat 1540.472 kb on + strandat 1540.472 kb on + strandat 1540.649 kb on + strand, within Xcc-8004.1607.1at 1540.737 kb on + strand, within Xcc-8004.1607.1at 1540.737 kb on + strand, within Xcc-8004.1607.1at 1540.737 kb on + strand, within Xcc-8004.1607.1at 1540.738 kb on - strand, within Xcc-8004.1607.1at 1540.823 kb on + strand, within Xcc-8004.1607.1at 1540.823 kb on + strand, within Xcc-8004.1607.1at 1540.824 kb on - strand, within Xcc-8004.1607.1at 1540.824 kb on - strand, within Xcc-8004.1607.1at 1540.824 kb on - strand, within Xcc-8004.1607.1at 1540.824 kb on - strand, within Xcc-8004.1607.1at 1540.824 kb on - strand, within Xcc-8004.1607.1at 1540.929 kb on + strand, within Xcc-8004.1607.1at 1540.954 kb on + strand, within Xcc-8004.1607.1at 1540.954 kb on + strand, within Xcc-8004.1607.1at 1540.954 kb on + strand, within Xcc-8004.1607.1at 1540.954 kb on + strand, within Xcc-8004.1607.1at 1540.955 kb on - strand, within Xcc-8004.1607.1at 1540.955 kb on - strand, within Xcc-8004.1607.1at 1540.955 kb on - strand, within Xcc-8004.1607.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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1,538,412 + Xcc-8004.1604.1 0.36 +0.9
1,538,413 - Xcc-8004.1604.1 0.37 -1.1
1,538,413 - Xcc-8004.1604.1 0.37 -1.6
1,538,644 - Xcc-8004.1604.1 0.77 +1.8
1,538,644 - Xcc-8004.1604.1 0.77 -3.4
1,538,644 - Xcc-8004.1604.1 0.77 -0.5
1,538,647 + Xcc-8004.1604.1 0.78 +0.8
1,538,648 - Xcc-8004.1604.1 0.78 +1.4
1,538,648 - Xcc-8004.1604.1 0.78 +2.1
1,538,685 + Xcc-8004.1604.1 0.84 +1.4
1,538,685 + Xcc-8004.1604.1 0.84 -1.1
1,538,686 - Xcc-8004.1604.1 0.85 -0.4
1,538,686 - Xcc-8004.1604.1 0.85 +1.6
1,538,686 - Xcc-8004.1604.1 0.85 +0.5
1,538,686 - Xcc-8004.1604.1 0.85 +0.4
1,538,739 - -1.4
1,538,785 + -2.9
1,538,857 + Xcc-8004.1605.1 0.13 -1.9
1,538,858 - Xcc-8004.1605.1 0.13 -0.5
1,538,858 - Xcc-8004.1605.1 0.13 +1.9
1,539,022 + Xcc-8004.1605.1 0.42 -3.0
1,539,022 + Xcc-8004.1605.1 0.42 +0.4
1,539,022 + Xcc-8004.1605.1 0.42 -1.0
1,539,062 - Xcc-8004.1605.1 0.49 -1.3
1,539,139 + Xcc-8004.1605.1 0.63 +1.0
1,539,139 + Xcc-8004.1605.1 0.63 -2.2
1,539,139 + Xcc-8004.1605.1 0.63 +5.0
1,539,140 - Xcc-8004.1605.1 0.63 -2.9
1,539,140 - Xcc-8004.1605.1 0.63 +0.1
1,539,140 - Xcc-8004.1605.1 0.63 -2.9
1,539,140 - Xcc-8004.1605.1 0.63 -2.3
1,539,208 + Xcc-8004.1605.1 0.75 +1.3
1,539,220 + Xcc-8004.1605.1 0.77 -2.7
1,539,220 + Xcc-8004.1605.1 0.77 +0.8
1,539,220 + Xcc-8004.1605.1 0.77 +1.2
1,539,220 + Xcc-8004.1605.1 0.77 -1.6
1,539,220 + Xcc-8004.1605.1 0.77 -3.4
1,539,220 + Xcc-8004.1605.1 0.77 -0.5
1,539,221 - Xcc-8004.1605.1 0.77 -0.5
1,539,221 - Xcc-8004.1605.1 0.77 -0.5
1,539,734 + Xcc-8004.1606.1 0.58 -0.6
1,539,734 + Xcc-8004.1606.1 0.58 +1.2
1,539,735 - Xcc-8004.1606.1 0.58 -1.2
1,539,735 - Xcc-8004.1606.1 0.58 -2.4
1,539,735 - Xcc-8004.1606.1 0.58 -1.3
1,539,942 + Xcc-8004.1606.1 0.88 -1.3
1,539,942 + Xcc-8004.1606.1 0.88 -0.3
1,539,942 + Xcc-8004.1606.1 0.88 -1.1
1,539,943 - Xcc-8004.1606.1 0.88 -2.6
1,540,032 + -1.9
1,540,032 + +0.3
1,540,268 + -2.9
1,540,283 - -0.8
1,540,385 + +2.0
1,540,385 + -0.6
1,540,385 + +6.0
1,540,385 + +1.0
1,540,386 - -2.1
1,540,386 - +1.3
1,540,472 + -0.1
1,540,472 + -0.7
1,540,472 + -2.1
1,540,649 + Xcc-8004.1607.1 0.15 -0.9
1,540,737 + Xcc-8004.1607.1 0.17 +0.7
1,540,737 + Xcc-8004.1607.1 0.17 -0.8
1,540,737 + Xcc-8004.1607.1 0.17 +1.9
1,540,738 - Xcc-8004.1607.1 0.17 +1.9
1,540,823 + Xcc-8004.1607.1 0.20 +0.6
1,540,823 + Xcc-8004.1607.1 0.20 -1.4
1,540,824 - Xcc-8004.1607.1 0.20 +0.6
1,540,824 - Xcc-8004.1607.1 0.20 -2.5
1,540,824 - Xcc-8004.1607.1 0.20 +1.4
1,540,824 - Xcc-8004.1607.1 0.20 +1.1
1,540,824 - Xcc-8004.1607.1 0.20 -0.7
1,540,929 + Xcc-8004.1607.1 0.23 +1.2
1,540,954 + Xcc-8004.1607.1 0.23 +2.1
1,540,954 + Xcc-8004.1607.1 0.23 -2.6
1,540,954 + Xcc-8004.1607.1 0.23 +3.1
1,540,954 + Xcc-8004.1607.1 0.23 +0.1
1,540,955 - Xcc-8004.1607.1 0.24 +1.4
1,540,955 - Xcc-8004.1607.1 0.24 +1.2
1,540,955 - Xcc-8004.1607.1 0.24 +1.7

Or see this region's nucleotide sequence