Experiment: Xylemvessel barcodes T0L1P3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1450.1 and Xcc-8004.1453.1 are separated by 128 nucleotides Xcc-8004.1453.1 and Xcc-8004.1454.1 overlap by 19 nucleotides Xcc-8004.1454.1 and Xcc-8004.1455.1 overlap by 74 nucleotides Xcc-8004.1455.1 and Xcc-8004.1456.1 are separated by 137 nucleotides Xcc-8004.1456.1 and Xcc-8004.1457.1 overlap by 56 nucleotides Xcc-8004.1457.1 and Xcc-8004.1458.1 are separated by 54 nucleotides
Xcc-8004.1450.1: Xcc-8004.1450.1 - Queuosine Biosynthesis QueC ATPase, at 1,386,949 to 1,387,623
Xcc-8004.1450.1
Xcc-8004.1453.1: Xcc-8004.1453.1 - hypothetical protein, at 1,387,752 to 1,388,084
Xcc-8004.1453.1
Xcc-8004.1454.1: Xcc-8004.1454.1 - hypothetical protein, at 1,388,066 to 1,388,278
Xcc-8004.1454.1
Xcc-8004.1455.1: Xcc-8004.1455.1 - hypothetical protein, at 1,388,205 to 1,388,435
Xcc-8004.1455.1
Xcc-8004.1456.1: Xcc-8004.1456.1 - hypothetical protein, at 1,388,573 to 1,388,878
Xcc-8004.1456.1
Xcc-8004.1457.1: Xcc-8004.1457.1 - putative; ORF located using Glimmer/Genemark, at 1,388,823 to 1,389,161
Xcc-8004.1457.1
Xcc-8004.1458.1: Xcc-8004.1458.1 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 1,389,216 to 1,390,226
Xcc-8004.1458.1
Position (kb)
1388
1389 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 1387.219 kb on + strand, within Xcc-8004.1450.1 at 1387.219 kb on + strand, within Xcc-8004.1450.1 at 1387.219 kb on + strand, within Xcc-8004.1450.1 at 1387.220 kb on - strand, within Xcc-8004.1450.1 at 1387.220 kb on - strand, within Xcc-8004.1450.1 at 1387.220 kb on - strand, within Xcc-8004.1450.1 at 1387.220 kb on - strand, within Xcc-8004.1450.1 at 1387.220 kb on - strand, within Xcc-8004.1450.1 at 1387.220 kb on - strand, within Xcc-8004.1450.1 at 1387.220 kb on - strand, within Xcc-8004.1450.1 at 1387.220 kb on - strand, within Xcc-8004.1450.1 at 1387.507 kb on + strand, within Xcc-8004.1450.1 at 1387.508 kb on - strand, within Xcc-8004.1450.1 at 1387.632 kb on + strand at 1387.632 kb on + strand at 1387.632 kb on + strand at 1387.632 kb on + strand at 1387.794 kb on + strand, within Xcc-8004.1453.1 at 1387.795 kb on - strand, within Xcc-8004.1453.1 at 1387.795 kb on - strand, within Xcc-8004.1453.1 at 1387.868 kb on + strand, within Xcc-8004.1453.1 at 1387.868 kb on + strand, within Xcc-8004.1453.1 at 1387.963 kb on + strand, within Xcc-8004.1453.1 at 1387.963 kb on + strand, within Xcc-8004.1453.1 at 1388.100 kb on + strand, within Xcc-8004.1454.1 at 1388.100 kb on + strand, within Xcc-8004.1454.1 at 1388.100 kb on + strand, within Xcc-8004.1454.1 at 1388.101 kb on - strand, within Xcc-8004.1454.1 at 1388.101 kb on - strand, within Xcc-8004.1454.1 at 1388.101 kb on - strand, within Xcc-8004.1454.1 at 1388.101 kb on - strand, within Xcc-8004.1454.1 at 1388.101 kb on - strand, within Xcc-8004.1454.1 at 1388.206 kb on + strand at 1388.206 kb on + strand at 1388.266 kb on - strand at 1388.266 kb on - strand at 1388.313 kb on - strand, within Xcc-8004.1455.1 at 1388.313 kb on - strand, within Xcc-8004.1455.1 at 1388.335 kb on + strand, within Xcc-8004.1455.1 at 1388.336 kb on - strand, within Xcc-8004.1455.1 at 1388.383 kb on + strand, within Xcc-8004.1455.1 at 1388.383 kb on + strand, within Xcc-8004.1455.1 at 1388.384 kb on - strand, within Xcc-8004.1455.1 at 1388.384 kb on - strand, within Xcc-8004.1455.1 at 1388.411 kb on + strand, within Xcc-8004.1455.1 at 1388.411 kb on + strand, within Xcc-8004.1455.1 at 1388.457 kb on - strand at 1388.490 kb on + strand at 1388.490 kb on + strand at 1388.491 kb on - strand at 1388.491 kb on - strand at 1388.491 kb on - strand at 1388.493 kb on + strand at 1388.539 kb on + strand at 1388.540 kb on - strand at 1388.604 kb on + strand, within Xcc-8004.1456.1 at 1388.604 kb on + strand, within Xcc-8004.1456.1 at 1388.604 kb on + strand, within Xcc-8004.1456.1 at 1388.604 kb on + strand, within Xcc-8004.1456.1 at 1388.605 kb on - strand, within Xcc-8004.1456.1 at 1388.605 kb on - strand, within Xcc-8004.1456.1 at 1388.605 kb on - strand, within Xcc-8004.1456.1 at 1388.605 kb on - strand, within Xcc-8004.1456.1 at 1388.605 kb on - strand, within Xcc-8004.1456.1 at 1388.605 kb on - strand, within Xcc-8004.1456.1 at 1388.605 kb on - strand, within Xcc-8004.1456.1 at 1388.605 kb on - strand, within Xcc-8004.1456.1 at 1388.647 kb on - strand, within Xcc-8004.1456.1 at 1388.647 kb on - strand, within Xcc-8004.1456.1 at 1388.647 kb on - strand, within Xcc-8004.1456.1 at 1388.647 kb on - strand, within Xcc-8004.1456.1 at 1388.647 kb on - strand, within Xcc-8004.1456.1 at 1388.647 kb on - strand, within Xcc-8004.1456.1 at 1388.647 kb on - strand, within Xcc-8004.1456.1 at 1388.699 kb on + strand, within Xcc-8004.1456.1 at 1388.771 kb on + strand, within Xcc-8004.1456.1 at 1388.772 kb on - strand, within Xcc-8004.1456.1 at 1388.772 kb on - strand, within Xcc-8004.1456.1 at 1388.814 kb on - strand, within Xcc-8004.1456.1 at 1388.878 kb on + strand at 1388.878 kb on + strand at 1388.878 kb on + strand at 1388.879 kb on - strand, within Xcc-8004.1457.1 at 1388.879 kb on - strand, within Xcc-8004.1457.1 at 1388.917 kb on + strand, within Xcc-8004.1457.1 at 1388.918 kb on - strand, within Xcc-8004.1457.1 at 1388.918 kb on - strand, within Xcc-8004.1457.1 at 1389.039 kb on - strand, within Xcc-8004.1457.1 at 1389.074 kb on + strand, within Xcc-8004.1457.1 at 1389.074 kb on + strand, within Xcc-8004.1457.1 at 1389.074 kb on + strand, within Xcc-8004.1457.1 at 1389.074 kb on + strand, within Xcc-8004.1457.1 at 1389.074 kb on + strand, within Xcc-8004.1457.1 at 1389.074 kb on + strand, within Xcc-8004.1457.1 at 1389.075 kb on - strand, within Xcc-8004.1457.1 at 1389.075 kb on - strand, within Xcc-8004.1457.1 at 1389.075 kb on - strand, within Xcc-8004.1457.1 at 1389.184 kb on + strand at 1389.258 kb on + strand at 1389.259 kb on - strand at 1389.259 kb on - strand at 1389.294 kb on + strand at 1389.294 kb on + strand at 1389.294 kb on + strand at 1389.295 kb on - strand at 1389.295 kb on - strand at 1389.295 kb on - strand at 1389.324 kb on + strand, within Xcc-8004.1458.1 at 1389.324 kb on + strand, within Xcc-8004.1458.1 at 1389.325 kb on - strand, within Xcc-8004.1458.1 at 1389.325 kb on - strand, within Xcc-8004.1458.1 at 1389.325 kb on - strand, within Xcc-8004.1458.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3 remove 1,387,219 + Xcc-8004.1450.1 0.40 -0.7 1,387,219 + Xcc-8004.1450.1 0.40 -2.6 1,387,219 + Xcc-8004.1450.1 0.40 -2.1 1,387,220 - Xcc-8004.1450.1 0.40 -0.3 1,387,220 - Xcc-8004.1450.1 0.40 +0.2 1,387,220 - Xcc-8004.1450.1 0.40 -2.3 1,387,220 - Xcc-8004.1450.1 0.40 +0.2 1,387,220 - Xcc-8004.1450.1 0.40 -1.4 1,387,220 - Xcc-8004.1450.1 0.40 +1.5 1,387,220 - Xcc-8004.1450.1 0.40 +1.1 1,387,220 - Xcc-8004.1450.1 0.40 -0.0 1,387,507 + Xcc-8004.1450.1 0.83 -0.5 1,387,508 - Xcc-8004.1450.1 0.83 +0.3 1,387,632 + -0.9 1,387,632 + -0.7 1,387,632 + +0.3 1,387,632 + -1.8 1,387,794 + Xcc-8004.1453.1 0.13 -0.2 1,387,795 - Xcc-8004.1453.1 0.13 +2.4 1,387,795 - Xcc-8004.1453.1 0.13 -0.6 1,387,868 + Xcc-8004.1453.1 0.35 -1.2 1,387,868 + Xcc-8004.1453.1 0.35 -0.8 1,387,963 + Xcc-8004.1453.1 0.63 -2.1 1,387,963 + Xcc-8004.1453.1 0.63 +2.5 1,388,100 + Xcc-8004.1454.1 0.16 +1.3 1,388,100 + Xcc-8004.1454.1 0.16 -2.4 1,388,100 + Xcc-8004.1454.1 0.16 -1.7 1,388,101 - Xcc-8004.1454.1 0.16 +0.7 1,388,101 - Xcc-8004.1454.1 0.16 +2.8 1,388,101 - Xcc-8004.1454.1 0.16 -3.1 1,388,101 - Xcc-8004.1454.1 0.16 +0.2 1,388,101 - Xcc-8004.1454.1 0.16 -0.5 1,388,206 + -0.5 1,388,206 + +2.4 1,388,266 - -1.7 1,388,266 - -2.1 1,388,313 - Xcc-8004.1455.1 0.47 -2.8 1,388,313 - Xcc-8004.1455.1 0.47 -1.7 1,388,335 + Xcc-8004.1455.1 0.56 -0.8 1,388,336 - Xcc-8004.1455.1 0.57 -1.5 1,388,383 + Xcc-8004.1455.1 0.77 -1.9 1,388,383 + Xcc-8004.1455.1 0.77 -0.3 1,388,384 - Xcc-8004.1455.1 0.77 +0.2 1,388,384 - Xcc-8004.1455.1 0.77 -1.3 1,388,411 + Xcc-8004.1455.1 0.89 -1.9 1,388,411 + Xcc-8004.1455.1 0.89 -0.5 1,388,457 - +0.5 1,388,490 + +1.0 1,388,490 + +2.5 1,388,491 - +5.2 1,388,491 - +2.1 1,388,491 - -0.9 1,388,493 + +0.9 1,388,539 + -1.2 1,388,540 - +0.0 1,388,604 + Xcc-8004.1456.1 0.10 +3.1 1,388,604 + Xcc-8004.1456.1 0.10 -1.3 1,388,604 + Xcc-8004.1456.1 0.10 -0.4 1,388,604 + Xcc-8004.1456.1 0.10 -0.3 1,388,605 - Xcc-8004.1456.1 0.10 -0.3 1,388,605 - Xcc-8004.1456.1 0.10 -2.5 1,388,605 - Xcc-8004.1456.1 0.10 +0.8 1,388,605 - Xcc-8004.1456.1 0.10 +0.4 1,388,605 - Xcc-8004.1456.1 0.10 -2.2 1,388,605 - Xcc-8004.1456.1 0.10 +1.4 1,388,605 - Xcc-8004.1456.1 0.10 -2.2 1,388,605 - Xcc-8004.1456.1 0.10 +1.1 1,388,647 - Xcc-8004.1456.1 0.24 +0.1 1,388,647 - Xcc-8004.1456.1 0.24 +0.9 1,388,647 - Xcc-8004.1456.1 0.24 +2.9 1,388,647 - Xcc-8004.1456.1 0.24 +0.2 1,388,647 - Xcc-8004.1456.1 0.24 +0.7 1,388,647 - Xcc-8004.1456.1 0.24 -2.2 1,388,647 - Xcc-8004.1456.1 0.24 +0.5 1,388,699 + Xcc-8004.1456.1 0.41 +2.0 1,388,771 + Xcc-8004.1456.1 0.65 -0.5 1,388,772 - Xcc-8004.1456.1 0.65 -0.4 1,388,772 - Xcc-8004.1456.1 0.65 +1.5 1,388,814 - Xcc-8004.1456.1 0.79 +2.9 1,388,878 + +2.3 1,388,878 + -1.2 1,388,878 + -0.7 1,388,879 - Xcc-8004.1457.1 0.17 -2.2 1,388,879 - Xcc-8004.1457.1 0.17 -1.3 1,388,917 + Xcc-8004.1457.1 0.28 +0.4 1,388,918 - Xcc-8004.1457.1 0.28 +3.3 1,388,918 - Xcc-8004.1457.1 0.28 +1.3 1,389,039 - Xcc-8004.1457.1 0.64 +2.5 1,389,074 + Xcc-8004.1457.1 0.74 -0.1 1,389,074 + Xcc-8004.1457.1 0.74 +2.1 1,389,074 + Xcc-8004.1457.1 0.74 +0.5 1,389,074 + Xcc-8004.1457.1 0.74 +0.5 1,389,074 + Xcc-8004.1457.1 0.74 +1.7 1,389,074 + Xcc-8004.1457.1 0.74 +0.3 1,389,075 - Xcc-8004.1457.1 0.74 -1.2 1,389,075 - Xcc-8004.1457.1 0.74 +0.3 1,389,075 - Xcc-8004.1457.1 0.74 -1.5 1,389,184 + -0.7 1,389,258 + -0.7 1,389,259 - -2.5 1,389,259 - +0.5 1,389,294 + -1.7 1,389,294 + -1.9 1,389,294 + +0.7 1,389,295 - -1.3 1,389,295 - -0.9 1,389,295 - +1.5 1,389,324 + Xcc-8004.1458.1 0.11 -0.7 1,389,324 + Xcc-8004.1458.1 0.11 +0.6 1,389,325 - Xcc-8004.1458.1 0.11 -4.0 1,389,325 - Xcc-8004.1458.1 0.11 -2.8 1,389,325 - Xcc-8004.1458.1 0.11 +0.3
Or see this region's nucleotide sequence