Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1396.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1395.1 and Xcc-8004.1396.1 are separated by 142 nucleotidesXcc-8004.1396.1 and Xcc-8004.1397.1 overlap by 13 nucleotidesXcc-8004.1397.1 and Xcc-8004.1398.1 overlap by 4 nucleotides Xcc-8004.1395.1: Xcc-8004.1395.1 - Adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 1,322,372 to 1,323,283 Xcc-8004.1395.1 Xcc-8004.1396.1: Xcc-8004.1396.1 - L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) / Cobyric acid synthase (EC 6.3.5.10), at 1,323,426 to 1,325,879 Xcc-8004.1396.1 Xcc-8004.1397.1: Xcc-8004.1397.1 - Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62), at 1,325,867 to 1,326,388 Xcc-8004.1397.1 Xcc-8004.1398.1: Xcc-8004.1398.1 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 1,326,385 to 1,327,431 Xcc-8004.1398.1 Position (kb) 1323 1324 1325 1326Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1322.627 kb on + strand, within Xcc-8004.1395.1at 1322.628 kb on - strand, within Xcc-8004.1395.1at 1322.628 kb on - strand, within Xcc-8004.1395.1at 1322.647 kb on + strand, within Xcc-8004.1395.1at 1322.999 kb on + strand, within Xcc-8004.1395.1at 1322.999 kb on + strand, within Xcc-8004.1395.1at 1322.999 kb on + strand, within Xcc-8004.1395.1at 1322.999 kb on + strand, within Xcc-8004.1395.1at 1323.000 kb on - strand, within Xcc-8004.1395.1at 1323.000 kb on - strand, within Xcc-8004.1395.1at 1323.289 kb on + strandat 1323.290 kb on - strandat 1323.331 kb on + strandat 1323.332 kb on - strandat 1323.332 kb on - strandat 1324.726 kb on - strand, within Xcc-8004.1396.1at 1324.853 kb on + strand, within Xcc-8004.1396.1at 1324.854 kb on - strand, within Xcc-8004.1396.1at 1324.860 kb on + strand, within Xcc-8004.1396.1at 1325.082 kb on + strand, within Xcc-8004.1396.1at 1325.682 kb on + strandat 1325.682 kb on + strandat 1325.682 kb on + strandat 1325.682 kb on + strandat 1325.682 kb on + strandat 1325.683 kb on - strandat 1325.954 kb on + strand, within Xcc-8004.1397.1at 1325.954 kb on + strand, within Xcc-8004.1397.1at 1325.954 kb on + strand, within Xcc-8004.1397.1at 1325.954 kb on + strand, within Xcc-8004.1397.1at 1325.954 kb on + strand, within Xcc-8004.1397.1at 1325.954 kb on + strand, within Xcc-8004.1397.1at 1325.955 kb on - strand, within Xcc-8004.1397.1at 1325.955 kb on - strand, within Xcc-8004.1397.1at 1325.955 kb on - strand, within Xcc-8004.1397.1at 1325.955 kb on - strand, within Xcc-8004.1397.1at 1325.955 kb on - strand, within Xcc-8004.1397.1at 1325.955 kb on - strand, within Xcc-8004.1397.1at 1326.322 kb on - strand, within Xcc-8004.1397.1at 1326.390 kb on + strandat 1326.391 kb on - strandat 1326.574 kb on + strand, within Xcc-8004.1398.1at 1326.574 kb on + strand, within Xcc-8004.1398.1at 1326.575 kb on - strand, within Xcc-8004.1398.1at 1326.575 kb on - strand, within Xcc-8004.1398.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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1,322,627 + Xcc-8004.1395.1 0.28 +1.0
1,322,628 - Xcc-8004.1395.1 0.28 -1.9
1,322,628 - Xcc-8004.1395.1 0.28 -1.1
1,322,647 + Xcc-8004.1395.1 0.30 -1.5
1,322,999 + Xcc-8004.1395.1 0.69 -2.2
1,322,999 + Xcc-8004.1395.1 0.69 -2.2
1,322,999 + Xcc-8004.1395.1 0.69 +1.2
1,322,999 + Xcc-8004.1395.1 0.69 -0.0
1,323,000 - Xcc-8004.1395.1 0.69 -1.3
1,323,000 - Xcc-8004.1395.1 0.69 -2.7
1,323,289 + +1.8
1,323,290 - +0.5
1,323,331 + -3.0
1,323,332 - +0.4
1,323,332 - +1.6
1,324,726 - Xcc-8004.1396.1 0.53 -0.9
1,324,853 + Xcc-8004.1396.1 0.58 -3.0
1,324,854 - Xcc-8004.1396.1 0.58 -0.1
1,324,860 + Xcc-8004.1396.1 0.58 -3.1
1,325,082 + Xcc-8004.1396.1 0.67 +0.4
1,325,682 + +0.9
1,325,682 + -1.8
1,325,682 + +1.7
1,325,682 + -1.7
1,325,682 + -1.5
1,325,683 - -2.3
1,325,954 + Xcc-8004.1397.1 0.17 -0.6
1,325,954 + Xcc-8004.1397.1 0.17 +2.9
1,325,954 + Xcc-8004.1397.1 0.17 +0.4
1,325,954 + Xcc-8004.1397.1 0.17 -1.4
1,325,954 + Xcc-8004.1397.1 0.17 +1.1
1,325,954 + Xcc-8004.1397.1 0.17 +2.0
1,325,955 - Xcc-8004.1397.1 0.17 -1.6
1,325,955 - Xcc-8004.1397.1 0.17 -0.7
1,325,955 - Xcc-8004.1397.1 0.17 -1.0
1,325,955 - Xcc-8004.1397.1 0.17 +1.3
1,325,955 - Xcc-8004.1397.1 0.17 -1.4
1,325,955 - Xcc-8004.1397.1 0.17 +0.8
1,326,322 - Xcc-8004.1397.1 0.87 +0.7
1,326,390 + -0.5
1,326,391 - -0.5
1,326,574 + Xcc-8004.1398.1 0.18 -1.3
1,326,574 + Xcc-8004.1398.1 0.18 +0.7
1,326,575 - Xcc-8004.1398.1 0.18 -0.3
1,326,575 - Xcc-8004.1398.1 0.18 -3.0

Or see this region's nucleotide sequence