Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1162.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1159.1 and Xcc-8004.1161.1 are separated by 48 nucleotidesXcc-8004.1161.1 and Xcc-8004.1162.1 are separated by 21 nucleotidesXcc-8004.1162.1 and Xcc-8004.1163.1 are separated by 3 nucleotides Xcc-8004.1159.1: Xcc-8004.1159.1 - Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1), at 1,093,984 to 1,094,598 Xcc-8004.1159.1 Xcc-8004.1161.1: Xcc-8004.1161.1 - Flavoredoxin, at 1,094,647 to 1,095,204 Xcc-8004.1161.1 Xcc-8004.1162.1: Xcc-8004.1162.1 - FIG01210644: hypothetical protein, at 1,095,226 to 1,095,810 Xcc-8004.1162.1 Xcc-8004.1163.1: Xcc-8004.1163.1 - Ferric siderophore transport system, periplasmic binding protein TonB, at 1,095,814 to 1,097,118 Xcc-8004.1163.1 Position (kb) 1095 1096Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1094.275 kb on + strand, within Xcc-8004.1159.1at 1094.536 kb on + strand, within Xcc-8004.1159.1at 1094.536 kb on + strand, within Xcc-8004.1159.1at 1094.536 kb on + strand, within Xcc-8004.1159.1at 1094.536 kb on + strand, within Xcc-8004.1159.1at 1094.537 kb on - strandat 1094.537 kb on - strandat 1094.597 kb on - strandat 1095.168 kb on - strandat 1095.600 kb on + strand, within Xcc-8004.1162.1at 1095.647 kb on + strand, within Xcc-8004.1162.1at 1095.647 kb on + strand, within Xcc-8004.1162.1at 1095.648 kb on - strand, within Xcc-8004.1162.1at 1095.648 kb on - strand, within Xcc-8004.1162.1at 1095.648 kb on - strand, within Xcc-8004.1162.1at 1095.791 kb on + strandat 1095.791 kb on + strandat 1095.792 kb on - strandat 1095.792 kb on - strandat 1095.792 kb on - strandat 1095.792 kb on - strandat 1095.898 kb on + strandat 1095.898 kb on + strandat 1095.899 kb on - strandat 1095.947 kb on - strand, within Xcc-8004.1163.1at 1096.555 kb on + strand, within Xcc-8004.1163.1at 1096.555 kb on + strand, within Xcc-8004.1163.1at 1096.555 kb on + strand, within Xcc-8004.1163.1at 1096.555 kb on + strand, within Xcc-8004.1163.1at 1096.555 kb on + strand, within Xcc-8004.1163.1at 1096.556 kb on - strand, within Xcc-8004.1163.1at 1096.556 kb on - strand, within Xcc-8004.1163.1at 1096.556 kb on - strand, within Xcc-8004.1163.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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1,094,275 + Xcc-8004.1159.1 0.47 +1.6
1,094,536 + Xcc-8004.1159.1 0.90 -3.9
1,094,536 + Xcc-8004.1159.1 0.90 +1.2
1,094,536 + Xcc-8004.1159.1 0.90 +2.1
1,094,536 + Xcc-8004.1159.1 0.90 -1.7
1,094,537 - +1.8
1,094,537 - +0.3
1,094,597 - -0.1
1,095,168 - +0.4
1,095,600 + Xcc-8004.1162.1 0.64 -2.5
1,095,647 + Xcc-8004.1162.1 0.72 +0.3
1,095,647 + Xcc-8004.1162.1 0.72 -1.9
1,095,648 - Xcc-8004.1162.1 0.72 -0.1
1,095,648 - Xcc-8004.1162.1 0.72 +0.3
1,095,648 - Xcc-8004.1162.1 0.72 -0.6
1,095,791 + -0.1
1,095,791 + +0.0
1,095,792 - -0.5
1,095,792 - -0.5
1,095,792 - +1.2
1,095,792 - -3.2
1,095,898 + +1.2
1,095,898 + +0.4
1,095,899 - -0.3
1,095,947 - Xcc-8004.1163.1 0.10 -2.8
1,096,555 + Xcc-8004.1163.1 0.57 +2.6
1,096,555 + Xcc-8004.1163.1 0.57 +1.0
1,096,555 + Xcc-8004.1163.1 0.57 -1.5
1,096,555 + Xcc-8004.1163.1 0.57 -1.6
1,096,555 + Xcc-8004.1163.1 0.57 +2.8
1,096,556 - Xcc-8004.1163.1 0.57 +2.1
1,096,556 - Xcc-8004.1163.1 0.57 -1.8
1,096,556 - Xcc-8004.1163.1 0.57 +0.4

Or see this region's nucleotide sequence