Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1126.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1125.1 and Xcc-8004.1126.1 are separated by 84 nucleotidesXcc-8004.1126.1 and Xcc-8004.1127.1 are separated by 69 nucleotides Xcc-8004.1125.1: Xcc-8004.1125.1 - Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57), at 1,070,291 to 1,071,490 Xcc-8004.1125.1 Xcc-8004.1126.1: Xcc-8004.1126.1 - Electron transfer protein azurin I, at 1,071,575 to 1,072,102 Xcc-8004.1126.1 Xcc-8004.1127.1: Xcc-8004.1127.1 - transcriptional regulator, at 1,072,172 to 1,074,937 Xcc-8004.1127.1 Position (kb) 1071 1072 1073Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1070.611 kb on + strand, within Xcc-8004.1125.1at 1070.684 kb on + strand, within Xcc-8004.1125.1at 1070.808 kb on - strand, within Xcc-8004.1125.1at 1070.808 kb on - strand, within Xcc-8004.1125.1at 1070.915 kb on + strand, within Xcc-8004.1125.1at 1070.915 kb on + strand, within Xcc-8004.1125.1at 1070.915 kb on + strand, within Xcc-8004.1125.1at 1070.915 kb on + strand, within Xcc-8004.1125.1at 1070.916 kb on - strand, within Xcc-8004.1125.1at 1071.074 kb on + strand, within Xcc-8004.1125.1at 1071.075 kb on - strand, within Xcc-8004.1125.1at 1071.255 kb on + strand, within Xcc-8004.1125.1at 1071.256 kb on - strand, within Xcc-8004.1125.1at 1071.303 kb on + strand, within Xcc-8004.1125.1at 1071.304 kb on - strand, within Xcc-8004.1125.1at 1071.304 kb on - strand, within Xcc-8004.1125.1at 1071.304 kb on - strand, within Xcc-8004.1125.1at 1071.304 kb on - strand, within Xcc-8004.1125.1at 1071.453 kb on + strandat 1071.483 kb on - strandat 1071.609 kb on + strandat 1071.609 kb on + strandat 1071.610 kb on - strandat 1071.929 kb on + strand, within Xcc-8004.1126.1at 1071.929 kb on + strand, within Xcc-8004.1126.1at 1071.930 kb on - strand, within Xcc-8004.1126.1at 1072.037 kb on + strand, within Xcc-8004.1126.1at 1072.040 kb on - strand, within Xcc-8004.1126.1at 1072.085 kb on - strandat 1072.590 kb on + strand, within Xcc-8004.1127.1at 1072.590 kb on + strand, within Xcc-8004.1127.1at 1072.591 kb on - strand, within Xcc-8004.1127.1at 1072.629 kb on - strand, within Xcc-8004.1127.1at 1072.810 kb on + strand, within Xcc-8004.1127.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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1,070,611 + Xcc-8004.1125.1 0.27 -0.0
1,070,684 + Xcc-8004.1125.1 0.33 -1.2
1,070,808 - Xcc-8004.1125.1 0.43 +2.5
1,070,808 - Xcc-8004.1125.1 0.43 +1.7
1,070,915 + Xcc-8004.1125.1 0.52 -0.4
1,070,915 + Xcc-8004.1125.1 0.52 -2.2
1,070,915 + Xcc-8004.1125.1 0.52 +0.4
1,070,915 + Xcc-8004.1125.1 0.52 -0.6
1,070,916 - Xcc-8004.1125.1 0.52 -1.8
1,071,074 + Xcc-8004.1125.1 0.65 -0.8
1,071,075 - Xcc-8004.1125.1 0.65 +3.2
1,071,255 + Xcc-8004.1125.1 0.80 +2.6
1,071,256 - Xcc-8004.1125.1 0.80 -2.5
1,071,303 + Xcc-8004.1125.1 0.84 +0.6
1,071,304 - Xcc-8004.1125.1 0.84 -1.5
1,071,304 - Xcc-8004.1125.1 0.84 +1.4
1,071,304 - Xcc-8004.1125.1 0.84 +0.2
1,071,304 - Xcc-8004.1125.1 0.84 +1.8
1,071,453 + -0.8
1,071,483 - -2.4
1,071,609 + +0.2
1,071,609 + +1.8
1,071,610 - +0.3
1,071,929 + Xcc-8004.1126.1 0.67 +1.1
1,071,929 + Xcc-8004.1126.1 0.67 -2.2
1,071,930 - Xcc-8004.1126.1 0.67 -1.7
1,072,037 + Xcc-8004.1126.1 0.88 -0.8
1,072,040 - Xcc-8004.1126.1 0.88 -2.2
1,072,085 - +0.5
1,072,590 + Xcc-8004.1127.1 0.15 -1.5
1,072,590 + Xcc-8004.1127.1 0.15 -2.3
1,072,591 - Xcc-8004.1127.1 0.15 -1.2
1,072,629 - Xcc-8004.1127.1 0.17 -2.4
1,072,810 + Xcc-8004.1127.1 0.23 +0.1

Or see this region's nucleotide sequence