Experiment: Xylemvessel barcodes T0L1P3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1018.1 and Xcc-8004.1019.1 are separated by 213 nucleotides Xcc-8004.1019.1 and Xcc-8004.1020.1 are separated by 178 nucleotides Xcc-8004.1020.1 and Xcc-8004.1021.1 are separated by 25 nucleotides
Xcc-8004.1018.1: Xcc-8004.1018.1 - Sugar transporter, at 965,176 to 966,510
Xcc-8004.1018.1
Xcc-8004.1019.1: Xcc-8004.1019.1 - hypothetical protein, at 966,724 to 967,944
Xcc-8004.1019.1
Xcc-8004.1020.1: Xcc-8004.1020.1 - Acetoacetyl-CoA reductase (EC 1.1.1.36), at 968,123 to 968,863
Xcc-8004.1020.1
Xcc-8004.1021.1: Xcc-8004.1021.1 - hypothetical protein, at 968,889 to 969,158
Xcc-8004.1021.1
Position (kb) 966
967
968 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 965.729 kb on - strand, within Xcc-8004.1018.1 at 965.974 kb on + strand, within Xcc-8004.1018.1 at 965.974 kb on + strand, within Xcc-8004.1018.1 at 965.974 kb on + strand, within Xcc-8004.1018.1 at 965.974 kb on + strand, within Xcc-8004.1018.1 at 965.975 kb on - strand, within Xcc-8004.1018.1 at 966.142 kb on + strand, within Xcc-8004.1018.1 at 966.143 kb on - strand, within Xcc-8004.1018.1 at 966.143 kb on - strand, within Xcc-8004.1018.1 at 966.228 kb on + strand, within Xcc-8004.1018.1 at 966.229 kb on - strand, within Xcc-8004.1018.1 at 966.229 kb on - strand, within Xcc-8004.1018.1 at 966.275 kb on - strand, within Xcc-8004.1018.1 at 966.275 kb on - strand, within Xcc-8004.1018.1 at 966.319 kb on + strand, within Xcc-8004.1018.1 at 966.319 kb on + strand, within Xcc-8004.1018.1 at 966.319 kb on + strand, within Xcc-8004.1018.1 at 966.320 kb on - strand, within Xcc-8004.1018.1 at 966.320 kb on - strand, within Xcc-8004.1018.1 at 966.385 kb on + strand at 966.386 kb on - strand at 966.386 kb on - strand at 966.386 kb on - strand at 966.386 kb on - strand at 966.388 kb on + strand at 966.389 kb on - strand at 966.477 kb on - strand at 966.477 kb on - strand at 966.508 kb on + strand at 966.509 kb on - strand at 966.601 kb on - strand at 966.869 kb on + strand, within Xcc-8004.1019.1 at 966.870 kb on - strand, within Xcc-8004.1019.1 at 967.247 kb on + strand, within Xcc-8004.1019.1 at 967.247 kb on + strand, within Xcc-8004.1019.1 at 967.247 kb on + strand, within Xcc-8004.1019.1 at 967.248 kb on - strand, within Xcc-8004.1019.1 at 967.248 kb on - strand, within Xcc-8004.1019.1 at 967.616 kb on + strand, within Xcc-8004.1019.1 at 967.616 kb on + strand, within Xcc-8004.1019.1 at 967.617 kb on - strand, within Xcc-8004.1019.1 at 967.617 kb on - strand, within Xcc-8004.1019.1 at 967.784 kb on + strand, within Xcc-8004.1019.1 at 967.785 kb on - strand, within Xcc-8004.1019.1 at 968.035 kb on + strand at 968.035 kb on + strand at 968.036 kb on - strand at 968.125 kb on - strand at 968.133 kb on + strand at 968.133 kb on + strand at 968.133 kb on + strand at 968.134 kb on - strand at 968.154 kb on + strand at 968.155 kb on - strand at 968.173 kb on - strand at 968.173 kb on - strand at 968.309 kb on - strand, within Xcc-8004.1020.1 at 968.311 kb on - strand, within Xcc-8004.1020.1 at 968.844 kb on + strand at 968.845 kb on - strand at 968.845 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3 remove 965,729 - Xcc-8004.1018.1 0.41 +1.2 965,974 + Xcc-8004.1018.1 0.60 +2.7 965,974 + Xcc-8004.1018.1 0.60 +2.3 965,974 + Xcc-8004.1018.1 0.60 -0.3 965,974 + Xcc-8004.1018.1 0.60 +1.7 965,975 - Xcc-8004.1018.1 0.60 +0.2 966,142 + Xcc-8004.1018.1 0.72 +0.4 966,143 - Xcc-8004.1018.1 0.72 -1.7 966,143 - Xcc-8004.1018.1 0.72 +0.1 966,228 + Xcc-8004.1018.1 0.79 +0.7 966,229 - Xcc-8004.1018.1 0.79 -2.8 966,229 - Xcc-8004.1018.1 0.79 +0.3 966,275 - Xcc-8004.1018.1 0.82 +1.7 966,275 - Xcc-8004.1018.1 0.82 -0.9 966,319 + Xcc-8004.1018.1 0.86 +1.6 966,319 + Xcc-8004.1018.1 0.86 +0.4 966,319 + Xcc-8004.1018.1 0.86 +1.3 966,320 - Xcc-8004.1018.1 0.86 +0.5 966,320 - Xcc-8004.1018.1 0.86 -0.5 966,385 + +0.3 966,386 - -0.5 966,386 - +2.3 966,386 - -0.9 966,386 - -3.9 966,388 + +0.5 966,389 - +0.3 966,477 - -1.1 966,477 - -0.6 966,508 + +0.9 966,509 - -2.8 966,601 - +2.3 966,869 + Xcc-8004.1019.1 0.12 -1.7 966,870 - Xcc-8004.1019.1 0.12 +2.1 967,247 + Xcc-8004.1019.1 0.43 -1.7 967,247 + Xcc-8004.1019.1 0.43 +0.3 967,247 + Xcc-8004.1019.1 0.43 -1.3 967,248 - Xcc-8004.1019.1 0.43 -0.3 967,248 - Xcc-8004.1019.1 0.43 -2.4 967,616 + Xcc-8004.1019.1 0.73 +0.1 967,616 + Xcc-8004.1019.1 0.73 -2.5 967,617 - Xcc-8004.1019.1 0.73 -2.3 967,617 - Xcc-8004.1019.1 0.73 -1.6 967,784 + Xcc-8004.1019.1 0.87 -0.1 967,785 - Xcc-8004.1019.1 0.87 +0.3 968,035 + -0.4 968,035 + +0.1 968,036 - +1.5 968,125 - +2.8 968,133 + -1.0 968,133 + +1.5 968,133 + +0.3 968,134 - -0.8 968,154 + -0.9 968,155 - -0.7 968,173 - -1.7 968,173 - -1.4 968,309 - Xcc-8004.1020.1 0.25 +1.4 968,311 - Xcc-8004.1020.1 0.25 +0.7 968,844 + -1.0 968,845 - +0.6 968,845 - +0.5
Or see this region's nucleotide sequence