Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26620 and BWI76_RS26625 are separated by 58 nucleotides BWI76_RS26625 and BWI76_RS26630 are separated by 37 nucleotides BWI76_RS26630 and BWI76_RS26635 are separated by 111 nucleotides BWI76_RS26635 and BWI76_RS26640 are separated by 221 nucleotides BWI76_RS26640 and BWI76_RS26645 are separated by 9 nucleotides
BWI76_RS26620: BWI76_RS26620 - Fe-S biogenesis protein NfuA, at 5,511,701 to 5,512,276
_RS26620
BWI76_RS26625: BWI76_RS26625 - gluconate transporter periplasmic gluconate-binding protein, at 5,512,335 to 5,513,009
_RS26625
BWI76_RS26630: BWI76_RS26630 - pimeloyl-[acyl-carrier protein] methyl ester esterase, at 5,513,047 to 5,513,829
_RS26630
BWI76_RS26635: BWI76_RS26635 - hypothetical protein, at 5,513,941 to 5,514,210
_RS26635
BWI76_RS26640: BWI76_RS26640 - ferrous iron transporter FeoC, at 5,514,432 to 5,514,668
_RS26640
BWI76_RS26645: BWI76_RS26645 - ferrous iron transporter B, at 5,514,678 to 5,516,996
_RS26645
Position (kb) 5513
5514 Strain fitness (log2 ratio) -2
-1
0
1 at 5512.114 kb on - strand, within BWI76_RS26620 at 5512.362 kb on - strand at 5512.511 kb on + strand, within BWI76_RS26625 at 5512.734 kb on + strand, within BWI76_RS26625 at 5512.743 kb on - strand, within BWI76_RS26625 at 5512.770 kb on - strand, within BWI76_RS26625 at 5512.860 kb on + strand, within BWI76_RS26625 at 5513.030 kb on + strand at 5513.108 kb on + strand at 5513.138 kb on + strand, within BWI76_RS26630 at 5513.141 kb on - strand, within BWI76_RS26630 at 5513.324 kb on - strand, within BWI76_RS26630 at 5513.375 kb on + strand, within BWI76_RS26630 at 5513.524 kb on + strand, within BWI76_RS26630 at 5513.669 kb on + strand, within BWI76_RS26630 at 5513.797 kb on + strand at 5513.930 kb on + strand at 5513.984 kb on + strand, within BWI76_RS26635 at 5513.988 kb on + strand, within BWI76_RS26635 at 5513.996 kb on - strand, within BWI76_RS26635 at 5514.244 kb on + strand at 5514.298 kb on + strand at 5514.608 kb on - strand, within BWI76_RS26640 at 5514.764 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM remove 5,512,114 - BWI76_RS26620 0.72 -1.6 5,512,362 - +1.2 5,512,511 + BWI76_RS26625 0.26 +0.1 5,512,734 + BWI76_RS26625 0.59 +0.1 5,512,743 - BWI76_RS26625 0.60 -0.8 5,512,770 - BWI76_RS26625 0.64 -0.4 5,512,860 + BWI76_RS26625 0.78 +0.0 5,513,030 + -0.5 5,513,108 + -0.5 5,513,138 + BWI76_RS26630 0.12 -1.3 5,513,141 - BWI76_RS26630 0.12 -0.1 5,513,324 - BWI76_RS26630 0.35 -1.8 5,513,375 + BWI76_RS26630 0.42 -0.6 5,513,524 + BWI76_RS26630 0.61 -0.1 5,513,669 + BWI76_RS26630 0.79 +0.0 5,513,797 + +0.2 5,513,930 + -0.3 5,513,984 + BWI76_RS26635 0.16 -0.2 5,513,988 + BWI76_RS26635 0.17 -0.5 5,513,996 - BWI76_RS26635 0.20 +0.1 5,514,244 + +1.0 5,514,298 + -0.5 5,514,608 - BWI76_RS26640 0.74 -1.3 5,514,764 - +0.1
Or see this region's nucleotide sequence