Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09635 and BWI76_RS09640 are separated by 0 nucleotides BWI76_RS09640 and BWI76_RS09645 are separated by 114 nucleotides
BWI76_RS09635: BWI76_RS09635 - amino acid ABC transporter ATP-binding protein, at 2,015,173 to 2,016,894
_RS09635
BWI76_RS09640: BWI76_RS09640 - cysteine/glutathione ABC transporter permease/ATP-binding protein CydD, at 2,016,895 to 2,018,661
_RS09640
BWI76_RS09645: BWI76_RS09645 - thioredoxin-disulfide reductase, at 2,018,776 to 2,019,744
_RS09645
Position (kb)
2016
2017
2018
2019 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2016.197 kb on - strand, within BWI76_RS09635 at 2016.501 kb on + strand, within BWI76_RS09635 at 2016.577 kb on - strand, within BWI76_RS09635 at 2017.001 kb on - strand at 2017.007 kb on + strand at 2017.216 kb on - strand, within BWI76_RS09640 at 2017.319 kb on + strand, within BWI76_RS09640 at 2017.355 kb on - strand, within BWI76_RS09640 at 2017.392 kb on - strand, within BWI76_RS09640 at 2017.817 kb on - strand, within BWI76_RS09640 at 2018.358 kb on - strand, within BWI76_RS09640 at 2018.799 kb on + strand at 2019.640 kb on + strand, within BWI76_RS09645
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM remove 2,016,197 - BWI76_RS09635 0.59 -1.5 2,016,501 + BWI76_RS09635 0.77 -1.5 2,016,577 - BWI76_RS09635 0.82 -0.1 2,017,001 - -0.6 2,017,007 + -2.7 2,017,216 - BWI76_RS09640 0.18 -3.5 2,017,319 + BWI76_RS09640 0.24 -2.4 2,017,355 - BWI76_RS09640 0.26 -1.5 2,017,392 - BWI76_RS09640 0.28 -0.9 2,017,817 - BWI76_RS09640 0.52 -0.9 2,018,358 - BWI76_RS09640 0.83 -0.4 2,018,799 + -0.3 2,019,640 + BWI76_RS09645 0.89 -5.8
Or see this region's nucleotide sequence